CSPI03G21100 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G21100
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 17161185 .. 17161829 (+)
RNA-Seq ExpressionCSPI03G21100
SyntenyCSPI03G21100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA

mRNA sequence

ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA

Coding sequence (CDS)

ATGCATGGGGTGTGCATGCACGAAAAATGGTTTAAAAGCATTCCTTCGCACCGTTCGTATGTTCATCTTGCTGATCGTGGTAAGATTCCTCAAACCATTAGTTTTGATAGCTCTTCCTCTATTCATGCTGAAGCGCTTGGTGTTTTCCATGTGTCCATTGATTTGGATTCTGGGTTTGTTTCTCGTGATACCGTCCCTTTGGCTGAACTACATAAATCTCATTTTGGTTTAACTCCTTCCACTTCCAAGAGCCATGGACAAGGTTCGATTCCTTCTTCCTCTAAAGGTAAGGGGTCTATGCCTTCGGGGCCTTCCAAGAGTTTATCTTATTCTACTAGTAGTTCCTCGAAAACCCTTCCCCAACAGCGATCCTCTGATCCTCTCTCGGGCACTATTCCCTTTGTATCTCCTCCCCATGATTCTCTGAGTGTTCCATCTACTCCTTCCTTGCCAATGGTTCATGGATCTGTTCCATCTCCTTGTGCGATAGAGTATTCTGTCCATACGTCCCTAAAGAAGTCCAAAAGCTCCATGAGGCCTCGGGTTGTCACCACCAAGATTAGTCAACAGAAACTTTCTTGTAATATTCAGTTTGTCCTTATTGATGACATTACCTTTCATCATGAAGAGAATGCTCAGAGGTGA

Protein sequence

MHGVCMHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIHAEALGVFHVSIDLDSGFVSRDTVPLAELHKSHFGLTPSTSKSHGQGSIPSSSKGKGSMPSGPSKSLSYSTSSSSKTLPQQRSSDPLSGTIPFVSPPHDSLSVPSTPSLPMVHGSVPSPCAIEYSVHTSLKKSKSSMRPRVVTTKISQQKLSCNIQFVLIDDITFHHEENAQR*
Homology
[Close]
BLAST of CSPI03G21100 vs. NCBI nr
Match: XP_031739255.1 (putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.6e-101
Identity = 197/200 (98.50%), Postives = 197/200 (98.50%), Query Frame = 0 

Query: 1   MHGVCMHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIHAEALGVFHVSIDLDSGFV 60
           MHGVCMHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIHAEALGVFHVSIDLDSGFV
Sbjct: 1   MHGVCMHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIHAEALGVFHVSIDLDSGFV 60

Query: 61  SRDTVPLAELHKSHFGLTPSTSKSHGQGSIPSSSKGKGSMPSGPSKSLSYSTSSSSKTLP 120
           SRDTVP AELHKSHFGLTPSTSKSHGQGSIPSS KGKGSM SGPSKSLSYSTSSSSKTLP
Sbjct: 61  SRDTVPSAELHKSHFGLTPSTSKSHGQGSIPSSFKGKGSMASGPSKSLSYSTSSSSKTLP 120

Query: 121 QQRSSDPLSGTIPFVSPPHDSLSVPSTPSLPMVHGSVPSPCAIEYSVHTSLKKSKSSMRP 180
           QQRSSDPLSGTIPFVSPPHDSLSVPSTPSLPMVHGSVPSPCAIEYSVHTSLKKSKSSMRP
Sbjct: 121 QQRSSDPLSGTIPFVSPPHDSLSVPSTPSLPMVHGSVPSPCAIEYSVHTSLKKSKSSMRP 180

Query: 181 RVVTTKISQQKLSCNIQFVL 201
           RVVTTKISQQKLSCNIQFVL
Sbjct: 181 RVVTTKISQQKLSCNIQFVL 200

[Close]
BLAST of CSPI03G21100 vs. NCBI nr
Match: KAE8653122.1 (hypothetical protein Csa_019801, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 6.8e-04
Identity = 32/62 (51.61%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 6  MHEKWFKSIPSHRSYVHLADRGKIPQTISFDSSSSIHAEALGVFHVSIDLDSGFVSRDTV 65
          M  K  K +PS R YV LADRGKI QTI +DSS+SI  E  GV  V+    SG  S+D +
Sbjct: 1  MRGKRVKIVPSRRPYVRLADRGKISQTIFYDSSTSISVEKFGVSLVASVSTSGSDSQDGI 60

Query: 66 PL 68
           L
Sbjct: 61 SL 62

The following BLAST results are available for this feature:
BLAST of CSPI03G21100 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21100 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G21100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031739255.14.6e-10198.50putative protein TPRXL [Cucumis sativus][more]
KAE8653122.16.8e-0451.61hypothetical protein Csa_019801, partial [Cucumis sativus][more]
BLAST of CSPI03G21100 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G21100.1CSPI03G21100.1mRNA