CSPI03G20820 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G20820
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 16862975 .. 16863208 (-)
RNA-Seq Expression	CSPI03G20820
Synteny	CSPI03G20820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACATGAATAAAATAATATGTAATAAGAAGAACAGTGAGGTGCAACAACAGGTTGAGGAGGATGGAAAAGTTCTTCCACCAGAAAGGACTTCCTCTCCTGCTATTGAATCTACAGGGATGGAGACAAGGGCCCGCAAAAAGGCTAATCAAGAAAAACTCAGGCCATTGGAAGAAAGAATGAAAGTGAGGGAGATGGAGAAAAAGCAGTTTGGGGAGTTGGAAAAGAAGCGA

mRNA sequence

ATGGACATGAATAAAATAATATGTAATAAGAAGAACAGTGAGGTGCAACAACAGGTTGAGGAGGATGGAAAAGTTCTTCCACCAGAAAGGACTTCCTCTCCTGCTATTGAATCTACAGGGATGGAGACAAGGGCCCGCAAAAAGGCTAATCAAGAAAAACTCAGGCCATTGGAAGAAAGAATGAAAGTGAGGGAGATGGAGAAAAAGCAGTTTGGGGAGTTGGAAAAGAAGCGA

Coding sequence (CDS)

ATGGACATGAATAAAATAATATGTAATAAGAAGAACAGTGAGGTGCAACAACAGGTTGAGGAGGATGGAAAAGTTCTTCCACCAGAAAGGACTTCCTCTCCTGCTATTGAATCTACAGGGATGGAGACAAGGGCCCGCAAAAAGGCTAATCAAGAAAAACTCAGGCCATTGGAAGAAAGAATGAAAGTGAGGGAGATGGAGAAAAAGCAGTTTGGGGAGTTGGAAAAGAAGCGA

Protein sequence

MDMNKIICNKKNSEVQQQVEEDGKVLPPERTSSPAIESTGMETRARKKANQEKLRPLEERMKVREMEKKQFGELEKKR

Homology

[Close]

BLAST of CSPI03G20820 vs. ExPASy TrEMBL
Match: A0A0A0L6Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284010 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MDMNKIICNKKNSEVQQQVEEDGKVLPPERTSSPAIESTGMETRARKKANQEKLRPLEER 60
          MDMNKIICNKKNSEVQQQVEEDGK+LPPERTSSPAIESTG+ETRARKKANQE LRPLEER
Sbjct: 1  MDMNKIICNKKNSEVQQQVEEDGKILPPERTSSPAIESTGLETRARKKANQEILRPLEER 60

Query: 61 MKVREMEKKQFGELEKKR 79
          MKVREMEKKQFGELEKKR
Sbjct: 61 MKVREMEKKQFGELEKKR 78

[Close]

BLAST of CSPI03G20820 vs. NCBI nr
Match: KGN57765.1 (hypothetical protein Csa_010171 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 1  MDMNKIICNKKNSEVQQQVEEDGKVLPPERTSSPAIESTGMETRARKKANQEKLRPLEER 60
          MDMNKIICNKKNSEVQQQVEEDGK+LPPERTSSPAIESTG+ETRARKKANQE LRPLEER
Sbjct: 1  MDMNKIICNKKNSEVQQQVEEDGKILPPERTSSPAIESTGLETRARKKANQEILRPLEER 60

Query: 61 MKVREMEKKQFGELEKKR 79
          MKVREMEKKQFGELEKKR
Sbjct: 61 MKVREMEKKQFGELEKKR 78

The following BLAST results are available for this feature:

BLAST of CSPI03G20820 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G20820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Z9	1.4e-29	96.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G284010 PE=4 SV=1	[more]

BLAST of CSPI03G20820 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57765.1	2.9e-29	96.15	hypothetical protein Csa_010171 [Cucumis sativus]	[more]

BLAST of CSPI03G20820 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 71..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G20820.1	CSPI03G20820.1	mRNA