CSPI03G20750 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G20750
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionzinc finger MYM-type protein 1-like
LocationChr3: 16764556 .. 16765388 (+)
RNA-Seq ExpressionCSPI03G20750
SyntenyCSPI03G20750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAATCAAGCAAGAATTGACTATCGGATTCGATTATGTGCAACAATTGATTGTGCTCGATTTTTGTTACAACAAGGTCTTCCATTTCGTGGGCACGATGAAACTGAAGATTCAAAAAATCAAGGTAATTTTTTTGAACTCCTACAATGGTTATGCAACCATAATAAAGATATTGAAGCTGTTTCTTTGAGAAACGCTTCTGAAAACATGAAAATGACTACACCAGACATATTGTGAATTGTATTGTTGTAGAAATAGTCAATGGAATCATACGAGATATTGGTGATAAGTTGTTTTTAATTTTGATAGATGAATCGAATGATATATCTTCAAAGGAGCAAATGTCAATTGTGTTGAGAAATGTAGACAAATGGTGTGTGATTGAACGATTTGTTGGTATTGTCCATGTTATCAATACAAGTTCATTATCACTCAAAGAAGCTATTAATGGATTCTTTTCTATACATGGATTAAGCATGACGAGTTTGTGAAAACAAGGTTATGATGGAGCAAGTAATATGCAAGGAGAATTTAATGGATTGAAAACTTTAATTTGGAGAGAAAATGAATGTGCATTTTACATTCATTGTTTCTCTCACCAACTTTAATTAACTTTGGTAGCTATTACAAAAAATCATGTAGAGATTGCTGGTCTTTTTATTTTCGTTGTAAATGTGGTGAATGTTATTAGTGCATTAGCAAAACATCGAGACATGCTAAGAGAGAAATATAGTGCCAACACTTTTGAAGCTTTGAATAATGGTGAACTGTCAAGTGGAAAAGGATTAAATCAGGAAACAATGATCAAACGACCAGGAGATACACGATAG

mRNA sequence

ATGTCTAATCAAGCAAGAATTGACTATCGGATTCGATTATGTGCAACAATTGATTGTGCTCGATTTTTGTTACAACAAGGTCTTCCATTTCGTGGGCACGATGAAACTGAAGATTCAAAAAATCAAGAGATTGCTGGTCTTTTTATTTTCGTTGTAAATGTGGTGAATGTTATTAGTGCATTAGCAAAACATCGAGACATGCTAAGAGAGAAATATAGTGCCAACACTTTTGAAGCTTTGAATAATGGTGAACTGTCAAGTGGAAAAGGATTAAATCAGGAAACAATGATCAAACGACCAGGAGATACACGATAG

Coding sequence (CDS)

ATGTCTAATCAAGCAAGAATTGACTATCGGATTCGATTATGTGCAACAATTGATTGTGCTCGATTTTTGTTACAACAAGGTCTTCCATTTCGTGGGCACGATGAAACTGAAGATTCAAAAAATCAAGAGATTGCTGGTCTTTTTATTTTCGTTGTAAATGTGGTGAATGTTATTAGTGCATTAGCAAAACATCGAGACATGCTAAGAGAGAAATATAGTGCCAACACTTTTGAAGCTTTGAATAATGGTGAACTGTCAAGTGGAAAAGGATTAAATCAGGAAACAATGATCAAACGACCAGGAGATACACGATAG

Protein sequence

MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKRPGDTR*
Homology
BLAST of CSPI03G20750 vs. ExPASy TrEMBL
Match: A0A1S3CPC9 (uncharacterized protein LOC103503287 OS=Cucumis melo OX=3656 GN=LOC103503287 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.3e-27
Identity = 93/242 (38.43%), Postives = 98/242 (40.50%), Query Frame = 0

Query: 1   MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------ 60
           MSNQARIDYRIRL ATIDCARFLLQQGLPFR HDETEDSKNQ                  
Sbjct: 1   MSNQARIDYRIRLGATIDCARFLLQQGLPFRRHDETEDSKNQGNFLELLQWLCNHNKDIE 60

Query: 61  ------------------------------------------------------------ 105
                                                                       
Sbjct: 61  AISLKNAPENLKLTAPDIQKDIVNCIAVEIVNSIIQDIGDKLFSILIDESKDISSKEQMS 120

BLAST of CSPI03G20750 vs. ExPASy TrEMBL
Match: A0A1S3BM43 (uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.3e-25
Identity = 73/136 (53.68%), Postives = 76/136 (55.88%), Query Frame = 0

Query: 1   MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------ 60
           MSNQARIDYRIRL ATIDCARFLLQQGLPFRGHDETEDSKNQ                  
Sbjct: 1   MSNQARIDYRIRLGATIDCARFLLQQGLPFRGHDETEDSKNQDKGCVIERFVGIVHITDT 60

Query: 61  ------------------------------------EIAGLFIFVVNVVNVISALAKHRD 83
                                               EIAGLF+ VVNVVNVI   AK +D
Sbjct: 61  SSLSLKEVIDGFFSLHGLSMTSLHGQALVAIAKNHVEIAGLFLLVVNVVNVIGVSAKRQD 120

BLAST of CSPI03G20750 vs. ExPASy TrEMBL
Match: A0A6P5U698 (zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110774420 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 66/204 (32.35%), Postives = 78/204 (38.24%), Query Frame = 0

Query: 2   SNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------- 61
           SNQ RIDY  RL A++  +R LLQQGLPFRGHDE+E+S NQ                   
Sbjct: 210 SNQDRIDYGTRLSASVGVSRILLQQGLPFRGHDESENSTNQGNFLAFLRWLCHFNDNIKA 269

Query: 62  ------------------------------------------------------------ 105
                                                                       
Sbjct: 270 VTLKIAYENMKLTSPDIQKDISNAISTKIINVIIRDIGDSLFAILVDESCDMSSKEQMAI 329

BLAST of CSPI03G20750 vs. ExPASy TrEMBL
Match: A0A6P5TRY7 (uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.5e-13
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K+ EIA LF  V NVVNV+ A AK RDMLREK++   FEALNN EL SG+GLNQET +KR
Sbjct: 24  KHSEIADLFTMVSNVVNVVGASAKRRDMLREKHADAIFEALNNNELLSGQGLNQETNLKR 83

Query: 100 PGDTR 105
             DTR
Sbjct: 84  SSDTR 88

BLAST of CSPI03G20750 vs. ExPASy TrEMBL
Match: A0A5E4G917 (PREDICTED: zinc finger MYM-type 1 (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B011549 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.2e-13
Identity = 43/65 (66.15%), Postives = 49/65 (75.38%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K+ EIA LF  V NVVNV+ A AKHRDMLREK++   FEALNN EL SG+GLN ET +KR
Sbjct: 7   KHSEIAYLFTMVSNVVNVVGASAKHRDMLREKHADVIFEALNNNELLSGQGLNPETNLKR 66

Query: 100 PGDTR 105
             DTR
Sbjct: 67  SSDTR 71

BLAST of CSPI03G20750 vs. NCBI nr
Match: XP_008465647.1 (PREDICTED: uncharacterized protein LOC103503287, partial [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 93/242 (38.43%), Postives = 98/242 (40.50%), Query Frame = 0

Query: 1   MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------ 60
           MSNQARIDYRIRL ATIDCARFLLQQGLPFR HDETEDSKNQ                  
Sbjct: 1   MSNQARIDYRIRLGATIDCARFLLQQGLPFRRHDETEDSKNQGNFLELLQWLCNHNKDIE 60

Query: 61  ------------------------------------------------------------ 105
                                                                       
Sbjct: 61  AISLKNAPENLKLTAPDIQKDIVNCIAVEIVNSIIQDIGDKLFSILIDESKDISSKEQMS 120

BLAST of CSPI03G20750 vs. NCBI nr
Match: XP_008449194.1 (PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 73/136 (53.68%), Postives = 76/136 (55.88%), Query Frame = 0

Query: 1   MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------ 60
           MSNQARIDYRIRL ATIDCARFLLQQGLPFRGHDETEDSKNQ                  
Sbjct: 1   MSNQARIDYRIRLGATIDCARFLLQQGLPFRGHDETEDSKNQDKGCVIERFVGIVHITDT 60

Query: 61  ------------------------------------EIAGLFIFVVNVVNVISALAKHRD 83
                                               EIAGLF+ VVNVVNVI   AK +D
Sbjct: 61  SSLSLKEVIDGFFSLHGLSMTSLHGQALVAIAKNHVEIAGLFLLVVNVVNVIGVSAKRQD 120

BLAST of CSPI03G20750 vs. NCBI nr
Match: XP_011658426.2 (zinc finger MYM-type protein 1 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 89/278 (32.01%), Postives = 95/278 (34.17%), Query Frame = 0

Query: 1   MSNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ------------------ 60
           MS+QA+IDY IRL ATIDCARFLLQQGLPFRGHDETEDSKNQ                  
Sbjct: 1   MSDQAKIDYWIRLGATIDCARFLLQQGLPFRGHDETEDSKNQGNFFELLQWFNYNKHIEA 60

Query: 61  ------------------------------------------------------------ 104
                                                                       
Sbjct: 61  VSLRNAPENLKLTAPDIQKDIVNCIGVKIVNGIIGDNGDKLLSILIDELKDISSKEQMSI 120

BLAST of CSPI03G20750 vs. NCBI nr
Match: XP_029148316.1 (uncharacterized protein LOC112742890 [Arachis hypogaea])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 58/114 (50.88%), Postives = 74/114 (64.91%), Query Frame = 0

Query: 2   SNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQEIAGLFIFVVNVV------ 61
           S QA+ +Y+I L ATIDC RFLL+QGL FRG+DET+DS NQ   G F+ ++N +      
Sbjct: 175 SEQAKKNYQIHLTATIDCIRFLLRQGLAFRGNDETDDSVNQ---GNFLELLNFLALSRVR 234

Query: 62  -----NVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKRPGDTR 105
                  I A  K RDMLR+     T EAL +GE++SG+GLNQE  +KR GDTR
Sbjct: 235 GQGYDGAIGASCKRRDMLRDSQMTKTIEALQSGEIASGRGLNQEIALKRAGDTR 285

BLAST of CSPI03G20750 vs. NCBI nr
Match: XP_034198219.1 (uncharacterized protein LOC117613754, partial [Prunus dulcis])

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-19
Identity = 57/110 (51.82%), Postives = 75/110 (68.18%), Query Frame = 0

Query: 2   SNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ----EIAGLFIFVV---NV 61
           S+QARIDYRI L A++DC RFLL+QGLPFRG+DE++ S N+    E+  L I ++     
Sbjct: 172 SDQARIDYRICLTASLDCVRFLLKQGLPFRGNDESDTSNNKGNYVELLELSISMLRGQGY 231

Query: 62  VNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKRPGDTR 105
              I A  + RDMLR++   N  EAL N +L +G+GLNQET +KR GDTR
Sbjct: 232 DGAIGASCRRRDMLRDQLQKNITEALENDDLPTGRGLNQETSLKRAGDTR 281

BLAST of CSPI03G20750 vs. TAIR 10
Match: AT1G41920.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 60.5 bits (145), Expect = 9.6e-10
Identity = 27/65 (41.54%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K  E+   F  +  ++NV+ A  K +D +RE+Y     E +N GE+ +GKGLNQE  ++R
Sbjct: 203 KQFEVGDFFDMISALLNVVGASCKGKDRIREEYLKEIEEGINQGEIKTGKGLNQELSLQR 262

Query: 100 PGDTR 105
           PG+TR
Sbjct: 263 PGNTR 267

BLAST of CSPI03G20750 vs. TAIR 10
Match: AT3G29763.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-09
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 2  SNQARIDYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ 43
          +N  + DYRIRL A+ID +R LL QGLPFRGHDE+E+S N+
Sbjct: 31 TNVVKNDYRIRLNASIDVSRHLLHQGLPFRGHDESEESTNK 71


HSP 2 Score: 52.8 bits (125), Expect = 2.0e-07
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K+ E+   F  +  ++NV+ A  K +D +RE       E ++NGE+ +G  LNQE  ++R
Sbjct: 246 KHVEVGEFFYMISVLLNVVGAFCKRKDKIREIDRQKVEEKISNGEIKTGTRLNQELSLQR 305

Query: 100 PGDTR 105
           PG+TR
Sbjct: 306 PGNTR 310

BLAST of CSPI03G20750 vs. TAIR 10
Match: AT3G31402.2 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 23  LLQQGLPFRGHDETEDSKNQEIAGLFIFVVNVVNV-----------ISALAKHRDMLREK 82
           L +QGL FRGH ++E+S N+   G F+ ++  +N+           I A  K +D++REK
Sbjct: 49  LTKQGLAFRGHYKSENSANK---GNFVELLK-LNIKKGRGQGYDGEIGASCKRKDLIREK 108

Query: 83  YSANTFEALNNGELSSGKGLNQETMIKRPGDTR 105
           +     E + NGE+S+   LNQE  ++RPG TR
Sbjct: 109 HRKKILEGIINGEISTRTWLNQEISLQRPGYTR 137

BLAST of CSPI03G20750 vs. TAIR 10
Match: AT3G29450.1 (General transcription factor 2-related zinc finger protein )

HSP 1 Score: 57.8 bits (138), Expect = 6.2e-09
Identity = 25/65 (38.46%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K+ EI   F  +  ++NV+ A  K +D +R+++     E +N GE+ +GKGLNQ+  ++R
Sbjct: 262 KHFEIGDFFDMISVLINVVGASCKRKDRVRDEFRKKLEERINQGEIKTGKGLNQKLSLQR 321

Query: 100 PGDTR 105
           PG+TR
Sbjct: 322 PGNTR 326

BLAST of CSPI03G20750 vs. TAIR 10
Match: AT1G19260.1 (TTF-type zinc finger protein with HAT dimerisation domain )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 25/65 (38.46%), Postives = 41/65 (63.08%), Query Frame = 0

Query: 40  KNQEIAGLFIFVVNVVNVISALAKHRDMLREKYSANTFEALNNGELSSGKGLNQETMIKR 99
           K+ E+   F  +  ++NV+ A  K +D +RE +     E ++NGE+ +G GLNQE  ++R
Sbjct: 378 KHVEVGEFFYMISVLLNVVGASCKRKDKIREIHRQKVEEKISNGEIKTGTGLNQELSLQR 437

Query: 100 PGDTR 105
           PG+TR
Sbjct: 438 PGNTR 442


HSP 2 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 8   DYRIRLCATIDCARFLLQQGLPFRGHDETEDSKNQ 43
           DYRI L A+ID +R LL QGLPFRGHDE+E+S N+
Sbjct: 169 DYRIWLNASIDVSRHLLHQGLPFRGHDESEESTNK 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CPC92.3e-2738.43uncharacterized protein LOC103503287 OS=Cucumis melo OX=3656 GN=LOC103503287 PE=... [more]
A0A1S3BM436.3e-2553.68uncharacterized protein LOC103491145 OS=Cucumis melo OX=3656 GN=LOC103491145 PE=... [more]
A0A6P5U6981.3e-1432.35zinc finger MYM-type protein 1-like OS=Prunus avium OX=42229 GN=LOC110774420 PE=... [more]
A0A6P5TRY75.5e-1366.15uncharacterized protein LOC110770113 OS=Prunus avium OX=42229 GN=LOC110770113 PE... [more]
A0A5E4G9177.2e-1366.15PREDICTED: zinc finger MYM-type 1 (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_... [more]
Match NameE-valueIdentityDescription
XP_008465647.14.7e-2738.43PREDICTED: uncharacterized protein LOC103503287, partial [Cucumis melo][more]
XP_008449194.11.3e-2453.68PREDICTED: uncharacterized protein LOC103491145 [Cucumis melo][more]
XP_011658426.21.9e-2032.01zinc finger MYM-type protein 1 [Cucumis sativus][more]
XP_029148316.17.3e-2050.88uncharacterized protein LOC112742890 [Arachis hypogaea][more]
XP_034198219.11.3e-1951.82uncharacterized protein LOC117613754, partial [Prunus dulcis][more]
Match NameE-valueIdentityDescription
AT1G41920.19.6e-1041.54General transcription factor 2-related zinc finger protein [more]
AT3G29763.12.1e-0963.41General transcription factor 2-related zinc finger protein [more]
AT3G31402.23.6e-0937.63General transcription factor 2-related zinc finger protein [more]
AT3G29450.16.2e-0938.46General transcription factor 2-related zinc finger protein [more]
AT1G19260.11.1e-0838.46TTF-type zinc finger protein with HAT dimerisation domain [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025398Domain of unknown function DUF4371PFAMPF14291DUF4371coord: 6..54
e-value: 9.5E-9
score: 35.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..104
NoneNo IPR availablePANTHERPTHR11697GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEINcoord: 43..104
coord: 9..43
NoneNo IPR availablePANTHERPTHR11697:SF206GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN-RELATEDcoord: 43..104
coord: 9..43

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20750.1CSPI03G20750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane