CSPI03G20400 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G20400
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 16266952 .. 16272216 (-)
RNA-Seq ExpressionCSPI03G20400
SyntenyCSPI03G20400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGTTTTTGGACTACTATGGCATGATAGTTACAAGGTTGCCGGTTGCATCTTTTTGCAAGTCTTTAGATTCAAATGGTTTCCTTATGAGAGAGATATTCTATTTTGCTTTTTATTTAGATTTCTTCAGTTTGGTTATGTTTAGCGTAAATTTTTCTGTCGATATTCGCATGTTAGTTTGTCATCTCCTTTTGCTTGCCCAAGTTTAGCTTTTATTGTAGTTGTTGACTGAATTCTTCCCTGTTCTTTTGCTCTTAATATAACACTTGTACACTCTTGTACTGTGAACTTACGTCTCATTTATTAATATTAAGTGAAGCCTAAATATTAAATAAAGAGGCTTGTCTTTGTTTAAAAAAATGTTAAATATGTAAACAAATGAAAGAAAAAGAAAGGAATTTAAAAGAGAATTGAGGGAAGTCGAACATAAATTGTAAAAAGGAAGTTAGGATAGGAAGAATACTGCACCCGTGAAACATTATTTATTTTTTAAAATTGCTTTTTTATACATTACCGTTATGTTTTCTTCCCTTGATAACACTGTTTATTTCTGTTAATCAGGAAGCTTATATGCGTATACAATTTCCTGAAATTTCCTCGGTGACTTTTTTTTCCGGTAAGTAGCTTGTAATCTACTTGCAAGTGCACCCCGCTTCATTTATGCACACAAATGTTCATTTATTCTTGGTTTTCTGTAGGACATTTTCATTCAAGGCTGTGTTAGATGATCTCGTCCAAAGTGGTAACTTATGGGCTTCACGTTCTGCTCAAGTAAGAAACTGAGCTATACTACATGTTAATTATATGGACATATCTATTCTGGAAACCTAACCTCCTTTTATTCTTCTTATCAGATCCTAGCATTGTGGTTTCCAGTTATTGTGTTACAGTAAGTCAATACCAAGAAAGTCAAGAACTGCAGTTTTCTCATACATCCATCATCCATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGTATGTTGTTTTTTACTTTTATCCTTTTTTTCTTATTATTGAAACATTGAATTTACAGGTTTGAAATACAAAAACCTCCTCACACATCCTTTTTTACTAGTTGGCTACAAAAAAGAATGAGAACTCTGTCTAATAAAAACACCAAGATGACCTATGTTTGCCACGAACTATCAGAATTCCTCTTTTTTTTGGTAGAGCTTAAAGCGGCGGGGCTACTTTTACTGATTCGTTAGAAGTATTGTACAATCTGAAACTCAAAATTTTGAAGCTTTTGAATGCATAGGTTTTAGTTTTGGCTTTTGGGGACTGGGAATAGTTTCCGTTATCCATCTTATTAAATTTTACTTCAACTAACTCTTACAAAACTTACTTTTATATCACGGAAGGATGGGTCTACCAATCACTTCATCAAAGTGGAATTTATGTCTTTTAGGATTTCTTTTGATGATTTATTAAGGGGAAGTGTGAAAATTAAGGAAAGAGGGAGAATTGTGGTTCTATTTCGTTTCAACTGGTTTCGGCTATCTAGAATGAGGACTGTCTATAGTGTATGCTAGATAACTCCAAACATAACTTATTTTCAAAACGAACAAGGTATAACAATTATATATTTTGATCAGGTCACATATTATTGTTGGAGAAATCCTTTTCAGAGTTGTTGAAATTTTCTTTCACGATTTTAACTGGAGTGAAAATTAGTATTTTCTAAGGTGGGCAAATGAAGATTTTATGATCCTTCTTAAAAAATTTCCCACGAAATGGACACTGCTTTCCTTTAACAAGAAGCAATAAATAAAAAAAGTCAGTTTCAAAATGTTGAGAGAATAAAAGAGACTAATGCTCAAAGATACAAATTTCAGGAGAGAATGAGAAAAGAACTGAACAAAATACAAAAAGAACCATTACAAACCCATCAAAGCACAAATTACAGAGTTGAGTTGAGACACTTTAATCAAGCAAGAAGTTGCTAGGAAGGAAGGATCAAAATTTTACTGTGATTTATCCTTGTGGACACCATAGAAATTAAGAAAATGTTGTTCCTTTTTTTTTTGTGTGTCAGTATGTGTGTTGGGAGGGGGGGGGGGGGGGGGGGTTGAGATGTTCTTTAGTCACACTCTAATTAAAATGAGATTTTGTTTTCTTACTAGGTTTGGAATAATCTATTGGAGCAATGAATCCAACTTGGAGCAATTGATTGATATAACATTTTTTTTGTTTTTTTTAGAAATGAAGGATTCGACCATGGTTCAAGCAACAAAGAATATTTTTAGAGGTGAAGGATTACCGGTTGGTTGTTCATGCTTGTACAGAAAATCATGTTATATGTATTATGATGGTATTTACACTAGTTTTGAGTCGGGTTGGGAAGTGTCAGGGGGGGGGGGGGGGGGAGGATAATGTACCAGACACTGAGGATTGAGAAGAGGTTAATAAAGTTATTGGCGATAGGAGGAAGGCTTGGAAAGACAACTAGAGAAGAAAAATTGGAGACGGGGTGATCAGTAAAATTATGAAGAAATTTGTGAGATGCGGAGAATAGAAAAACAATGGAGCAGAAAAATTGGAAAACTGATTAAAGGAAACATTGCAAGTCTTTCCATTAATGATTTCAAGTGGGAAATGGCTAATATTCTTACTAACACTCTGTTTTATAGTGGTTGGTACAACATTTGGTAACCTTTGAAGAACATGATTGATGAGGACAACATGCTGAATCTAGTTCGTCTTTGTATGGTATTTCATAAATTTGTGAGCAAAGCCTGCCCCACATGACCCTCTCTCCCCATAGTTGCCTCATTTCCGAGTTTGGATTTGACTAATCTAGTCACCTCTTCATTCACTGTCACTTTGCAAAGAGGTTTCAGAAGGAGATCTTCCTTTCTTTTGGTTGGTTCACTGCCCAACTGCCCAACCAAAAGACACTTATCACGCTCTCACTTATACTCACTGGTTATCCCTTTACAAAGCAAAAGAAAATCATGTGGATGCATAGATTCGTGCTTTCTTATGGATCACATGGAAGGGGAGAAACAAGTGCCTCTTCAAAGATAAGGGAAGCTCTTTTGATTGATATTTTGGAGTCTGATTCTATGTTCTCAATATCTTTCATGCTATGAGTTGGTGTAAATGCACATCTTTCTTTAATACATACACCCTTTTTTCCCTTTTTGACCAATTGGAGAAATCTTTCGCAACTCCTCTAGCTGTCTTCAGCCCTTTTTTGTTCAAGGCAGACTATGAAATATTTGGGAAGAAAATTTCTATTAAGCTCTCTTTTTTTTCTTATTTAAATAAGTAGATTCTCACCTTTTTCACGTTTTTCTTTATATCAGTGAGTATCGATGTGAACCTATGCACACCTTGACTGATCTCACAGTATGACCTGTCTGATTCTATAATATTTGGGTGTTAAAACAAACTCATAGGATATTAATTACTAAGTAAATGACCACCATGGACTCAACGACCTCTAAGCTCTTTATTGAAACAATGTCTCTTTTTTACCACTAGGTTAACCATGATTGTTTATCCCGTTTCTTTTATGAAAGACCGTCAAGTTGCTGATATTCTTATGCATTCAGGGAGCTCTCTATCTCGTTCATTTGGGTTCATCTAGTACGACAGAGAAACAAAGGTTTTGACACTTTGTTCTTTACTAGAAGAGGTTTTTCTTGTAGATCATTGTTCCATTTTTTTTACTGGATTCCTCTCCTAAGGATTTGATTTTCTTGCTCATTTGGAAAGTGGATCCTAAAATAAGGTGAAGTTCTTGTTTCGGGATAAAAGGGAGAGTTTTGTGATGATTTTTCCCCCTCAATTTGTTGATAATGTGGTGAGAAGGGGCTGAGATACTTCAGAAGGTTATGTGGTTGGTTATATACTCATGTGGTCACTATACCCTTACATGTACCATTTATTCTTGTTCAAGAACCATTGATCAATACGGAACAGAATACAATGCTGAATGTCTTAGCTGTTTTATCATTGCTCTCCCATTTTCACCTTAGGCTCGAGAGGGGGATGTCCACCTTCGGACTTGTTCGTCCATAATTTTTCTGTTTATCTTTTTTTCTAATGTTTAGACAACCCACCCTTCTCGGGAGTCTGATTCTATGTTCTCAATATGGAATGTAAAAATTCTGAATAACGTAGAGTTCTTTGGGTGACAAATTTTACATGGATTAGTTGGATCAGATCTTGACCAGAGAACCATAGGGAACCTAGATCCGATCATGTGAATTTGTGAGTATTCTCTGCAGTCTGGCATGAGTTCTTTGAGGTTTTCAATTTTGAGCTTTGTTTGCTCTTAAAGTTGCAGGAAGTCAGGCGAGTAGCTTATCGTCCATATGCCATTTTGTGAAAAGATATGGCTGTTTTTGTGGCAGGCTTGGATGTTTGCTATTTTATGGGGGTTGAGGGGTGAAGAAATAAAAGAATTTTCATTGGATGTGAGGATTCTTATAGTGCGAATTTTGTTCTCTTGCTAGATTCTCTAGGCTTTGATTTTCAAGTTTCTTTTCTTTTTTTTTTCCCTCCGTCGTTATGTCATATTTCTCTTATTGGAACCCTTTTTTGTAGTTTGACTCCCTTTCCTGAGTTTTAAATTTTGCAAGTCCGTGTGTTCTTTTTTTTTTTTCCTTTCTCTTCTTAATGAAAGTTAAGTTGATTATTTTGAGAGATGCAAATTCGTATCCAAATTAACTAACTTTTGCTCCAATATAAGTTTCCAAGCTCCCTGACTTCATCGCAAAAGGATTATGTAATACTGTTGTTTGTGCATTGAGATTTGTGGTATATGCCATAGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACTGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCGTCTGTTTAGTTGCATCGTTGGTTCAACTTGCATAAAGAATATCGTATATTTCCGACCTGCTATCATGAAAGATACAACTTAACAGAGGCCTTCACTGTTGCAAGATGAATGCCATATTTGCATGAACCTTCATAGACATTCTAGTAGTGAAACTGACTTAATTATTCAGGAATGTAGCTTCCTTTCACTTGAACTTAATCCTTATTCAGGAGTGTAGCTTGCTTTCCCTTTGATTGTAATTGCAACTTTGGCCTGATATTGGTCTTTTTTTTATTTTTTTATTATTATTATTATCTATTTATTTATTTTTCTAAATACAGTTGC

mRNA sequence

CTCGTTTTTGGACTACTATGGCATGATAGTTACAAGGAAGCTTATATGCGTATACAATTTCCTGAAATTTCCTCGGTGACTTTTTTTTCCGGACATTTTCATTCAAGGCTGTGTTAGATGATCTCGTCCAAAGTGGTAACTTATGGGCTTCACGTTCTGCTCAAATCCTAGCATTGTGGTTTCCAGTTATTGTGTTACAGTAAGTCAATACCAAGAAAGTCAAGAACTGCAGTTTTCTCATACATCCATCATCCATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACTGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCGTCTGTTTAGTTGCATCGTTGGTTCAACTTGCATAAAGAATATCGTATATTTCCGACCTGCTATCATGAAAGATACAACTTAACAGAGGCCTTCACTGTTGCAAGATGAATGCCATATTTGCATGAACCTTCATAGACATTCTAGTAGTGAAACTGACTTAATTATTCAGGAATGTAGCTTCCTTTCACTTGAACTTAATCCTTATTCAGGAGTGTAGCTTGCTTTCCCTTTGATTGTAATTGCAACTTTGGCCTGATATTGGTCTTTTTTTTATTTTTTTATTATTATTATTATCTATTTATTTATTTTTCTAAATACAGTTGC

Coding sequence (CDS)

ATGGCGCTTAAGGTTCAAGGGGACTCAGCTCTGAATCGGACCACACTCTTGGGAATTTGCTTTAATGGAGTTCTGAAGATTGAAGTCTTTCAACAGTATGAAGCTACTGCCTTGTTGTGTTGCCTTGACCTCGCATCCATGAGCTGCAAGACAAGTTTGGGGTCAAGGAGCGAGCATGCTAGCTGTTGGTTCGTCTGTTTAGTTGCATCGTTGGTTCAACTTGCATAA

Protein sequence

MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHASCWFVCLVASLVQLA*
Homology
[Close]
BLAST of CSPI03G20400 vs. ExPASy TrEMBL
Match: A0A0A0LCD7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFVCLVASLVQLA 76
          SCWF+CLVASLV LA
Sbjct: 61 SCWFICLVASLVHLA 75

[Close]
BLAST of CSPI03G20400 vs. NCBI nr
Match: KGN57721.1 (hypothetical protein Csa_009912 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.1e-33
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60
          MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA
Sbjct: 1  MALKVQGDSALNRTTLLGICFNGVLKIEVFQQYEATALLCCLDLASMSCKTSLGSRSEHA 60

Query: 61 SCWFVCLVASLVQLA 76
          SCWF+CLVASLV LA
Sbjct: 61 SCWFICLVASLVHLA 75

The following BLAST results are available for this feature:
BLAST of CSPI03G20400 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G20400 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCD73.5e-3397.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G259710 PE=4 SV=1[more]
BLAST of CSPI03G20400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57721.17.1e-3397.33hypothetical protein Csa_009912 [Cucumis sativus][more]
BLAST of CSPI03G20400 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20400.1CSPI03G20400.1mRNA