CSPI03G20260 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G20260
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 16084781 .. 16084963 (-)
RNA-Seq ExpressionCSPI03G20260
SyntenyCSPI03G20260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCATGTCTTCAAAAGAACAACAAAGATAATGCCAAAGCTCCTCGCCTACGACGACTGACTGTGAATGCCCTTCGTCGTTCACGACCACCTCGAAGAACCCGCAACAGTAAAATCAACCCTGCTCCTCCGCCTAAGAAGAGCACCGGCGGCGGTGGTCAGACAAACTAA

Protein sequence

MESSSSCLQKNNKDNAKAPRLRRLTVNALRRSRPPRRTRNSKINPAPPPKKSTGGGGQTN*
Homology
BLAST of CSPI03G20260 vs. ExPASy TrEMBL
Match: A0A0A0L7D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 7.1e-21
Identity = 57/60 (95.00%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNALRRSRPPRRTRNSKINPAPPPKKSTGGGGQTN 60
          MESSSSCLQKNNKDNAKAPRLRRLTVNA R SRPPRR RNSKINPAPPPKKSTGGGGQTN
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGGGQTN 60

BLAST of CSPI03G20260 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.3e-11
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1  MESSSSCLQK--NNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKK 60
          MESSSS LQK  NN  NAKAPRL RLT+NA        R SRPPRRTR SKIN APPPKK
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRL-RLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60

BLAST of CSPI03G20260 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.7e-11
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKKST 60
          MESSSS L+KNN DNAKAPRL RL++NA        R SRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

BLAST of CSPI03G20260 vs. NCBI nr
Match: KAE8650564.1 (hypothetical protein Csa_011065, partial [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.0e-18
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNALRRSRPPRRTRNSKINPAPPPKKSTGGG 57
          MESSSSCLQKNNKDNAKAPRLRRLTVNA R SRPPRR RNSKINPAPPPKKSTGGG
Sbjct: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNARRHSRPPRRARNSKINPAPPPKKSTGGG 56

BLAST of CSPI03G20260 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 4.7e-11
Identity = 51/69 (73.91%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 1  MESSSSCLQK--NNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKK 60
          MESSSS LQK  NN  NAKAPRL RLT+NA        R SRPPRRTR SKIN APPPKK
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRL-RLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKK 60

BLAST of CSPI03G20260 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 4.9e-08
Identity = 43/63 (68.25%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 1  MESSSSCLQKNNKDNAKAPRLRRLTVNA-------LRRSRPPRRTRNSKINPAPPPKKST 57
          MESSSS L+KNN DNAKAPRL RL++NA        R SRP +R RNSK N APPPKKST
Sbjct: 1  MESSSSSLRKNNNDNAKAPRL-RLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKST 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7D27.1e-2195.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258100 PE=4 SV=1[more]
A0A5D3DY742.3e-1173.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KAN38.7e-1170.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8650564.14.0e-1894.64hypothetical protein Csa_011065, partial [Cucumis sativus][more]
KAA0048493.14.7e-1173.91hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... [more]
KAE8646590.14.9e-0868.25hypothetical protein Csa_005634, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20260.1CSPI03G20260.1mRNA