CSPI03G20120 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G20120
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 15917976 .. 15918416 (+)
RNA-Seq ExpressionCSPI03G20120
SyntenyCSPI03G20120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

mRNA sequence

ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

Coding sequence (CDS)

ATGCAGCAGATTCCGTCAATCAATAGAAACCCTTTCGAAGGAAAAAAAAGAAAAGAAAAGAATGACTGGTGCTGTACTTTTCGACTGGCCGGCGTACTCCTCGCCGGAGAAAAAAGAGCAAACAAGCTCCAAAATTCAAATTCTGTAGGAGAAGAGCAACAGCCGCGCATGGGGAAAGACGCAAAAGATTTATGGAGGAAAAAGAAAAACAGTGGCAATAAAGAATTTGAAGTTAATGCTGTTTGTTCTCCCAAAATTCCATCTGTCAACAGCTCCCTAAATGAATTAACTGCCGCCAAATCTGTAGGAGAAGAACAACAGCCGCGCGTGGGGAAAGAGGCAAAGGATTTATGGAGGAAAGAGAAAAACGGTGGCAATAAAGAATCTGATGTTAATGCTGTTTTTTTTTTCCAAAATTCCATTTGCCAACAGCTCCCTAAA

Protein sequence

MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRKEKNGGNKESDVNAVFFFQNSICQQLPK
Homology
BLAST of CSPI03G20120 vs. ExPASy TrEMBL
Match: A0A0A0LCB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253530 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.6e-77
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0

Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD
Sbjct: 1   MEQIPAINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 148
           EKNGGNKESDVNAVFFFQNSICQQLPK
Sbjct: 121 EKNGGNKESDVNAVFFFQNSICQQLPK 147

BLAST of CSPI03G20120 vs. ExPASy TrEMBL
Match: A0A0A0L3L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.1e-42
Identity = 98/134 (73.13%), Postives = 106/134 (79.10%), Query Frame = 0

Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAGEKRANKLQNSNSVGEEQQPRMGKD 60
           M+QIP+INRNPFEGKK          F  +   L  +K  NK QNSNSVG +QQPRMGK+
Sbjct: 1   MEQIPAINRNPFEGKKSMA---GAVFFDRSAYSLPEKKEHNKRQNSNSVG-DQQPRMGKE 60

Query: 61  AKDLWRKKKNSGNKEFEVNAVCSPKIPSVNSSLNELTAAKSVGEEQQPRVGKEAKDLWRK 120
           AKDLWRK+KNSGNKE EVNA CSPKIPSVNSSLNEL A  SVGEEQQPRVGKEAKDLWRK
Sbjct: 61  AKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATNSVGEEQQPRVGKEAKDLWRK 120

Query: 121 EKNGGNKESDVNAV 135
           EKN GNK+S VNAV
Sbjct: 121 EKNSGNKKSKVNAV 130

BLAST of CSPI03G20120 vs. ExPASy TrEMBL
Match: A0A5A7V6J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001420 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-13
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAG--------EKRANKLQNSNSVGEE 60
           MQQ+P+INRNPFEGKK            +AG LL          EK  N  QNSNS GEE
Sbjct: 72  MQQVPTINRNPFEGKK-----------SMAGALLLDWPASSSPEEKEKNTHQNSNSEGEE 131

Query: 61  QQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPK 86
           Q   +GK+A++LWR++K+SGNK  EVNAVCSPK
Sbjct: 132 QPWCVGKEARNLWREEKSSGNKAPEVNAVCSPK 153

BLAST of CSPI03G20120 vs. NCBI nr
Match: KAA0061455.1 (hypothetical protein E6C27_scaffold41G00110 [Cucumis melo var. makuwa] >TYK10824.1 hypothetical protein E5676_scaffold332G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 3.2e-13
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 1   MQQIPSINRNPFEGKKRKEKNDWCCTFRLAGVLLAG--------EKRANKLQNSNSVGEE 60
           MQQ+P+INRNPFEGKK            +AG LL          EK  N  QNSNS GEE
Sbjct: 72  MQQVPTINRNPFEGKK-----------SMAGALLLDWPASSSPEEKEKNTHQNSNSEGEE 131

Query: 61  QQPRMGKDAKDLWRKKKNSGNKEFEVNAVCSPK 86
           Q   +GK+A++LWR++K+SGNK  EVNAVCSPK
Sbjct: 132 QPWCVGKEARNLWREEKSSGNKAPEVNAVCSPK 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCB62.6e-7798.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G253530 PE=4 SV=1[more]
A0A0A0L3L42.1e-4273.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437510 PE=4 SV=1[more]
A0A5A7V6J41.5e-1353.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0061455.13.2e-1353.76hypothetical protein E6C27_scaffold41G00110 [Cucumis melo var. makuwa] >TYK10824... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 38..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20120.1CSPI03G20120.1mRNA