CSPI03G19700 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G19700
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L9, chloroplastic
Location	Chr3: 15424188 .. 15426709 (-)
RNA-Seq Expression	CSPI03G19700
Synteny	CSPI03G19700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATTAATGCATCTTATGAAAAAGAAAAAGGTTACTTTATGGTTTTCATGTAATTAAGCTTTTATATTTAGTTAAATCCAAATTTCTAATTTACATTTAGAAAGCCCAATAACTTTCCAGCCCATCAGCCCATCAGCCCAATTGCCAAAAGGAAAGGAAAGAAAAATACTAAATTAAAAAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGGTAATTTCACCTTTTTTTTCTTTTTTTCTACTCCAGTTTTGCTCTTTCTTCTTCCTCACCCACCTGTTTTTGTATTCATGCACGTCTTAAAAGCTTTTGTGGCTCTAATTTTTCCATTTCCTTATACAGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAGTGAGTATGTGACTTCACTTTTTTTATTCTTTTAGTTTTGATGTCTAACTGTACATTTTTATGGACAGTGAATTGAATATTTCTTACTTTGTTGTTTAAAAAGAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGGTATGTCTCTTCAATTTGGATCACTCCAGTTACTTTTGATTGTTTTTACATACGTGTTCTGGTGTTCATTGATTAGTTTTAGTTTGTTGTTTCTTCCCAATTGCAAAGAGAGGGGTTGGGGAGAAGACAAATTAATTTAGATTACAGTAAATCCTGCTTCTTTTTACTTGCTAATGGTTGATGTACTTTTTTTTGGGTTTGATTTAAAATTTTTAGCAACCCACATGACAACACATTTGAGTGGTATGAAAATTCATAATCTTTAGTTTAACCAAAGTGTGGGGACTTGGTGGAGTATAGGCTGATTGATTTTGCTGTCATAGCTTTGTTTTCTCATGTTGGGTGTATCTCCATAGTAGAGGACTCAGATGGGTTTCACACTTTTCTATCATTTCAATTCTTTTGAATTTAGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTTTGTAACTTCACTTTTTATCCAATTTGTTTGAAGTTGTATACTTAGGTTTGGAACATTTTGGATACCTTGACATTCCTTGATTCATTCAATATTTTATTAGCTATAATTGATGCATGACGTTTTTTTAGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTAGGCATTGAAAGATACTTTTCTACTTGTTGAAATGAGAATTTAAATGGTTAGTTATTTATTTATTCCTCAGGTTAGTTGATCTTTTTGAGGTGTGAAACCTTAGAGTATCATAATGTGAAGTTTGAGAATAGGACGGATGTTTTGTGCAAAGTGTAAGCTAGGATTTCAATTGAACTCTTCTCTTCCTTTTTTTTCCTTTGGGGGGTGGGAGGGTGGTTGGCACCTGGTTGAATAAACCGGAGTCTTGTTATCGGCGGTCTTGGGAGTTTGGGGTTAACCAAGAAGTTGTGGGTCCAACGACTGAAAAACATCACTTTCATTTTTTATTAACTTCTTTCATTGTTAACCCACGGCCCAAACTTAACAACTCCCCACGTCTTTTACCAATAGATATAGACCTATTTTTTCTTTTTTAATGTCGATCTAAGCATTTCATTTTTCTTTTCCGGGTCAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTATCGTCTCATTCTTTTTGTGCAGAAATGTTCAAGGAATAAATTGTTTTGCT

mRNA sequence

ATGTGCATTAATGCATCTTATGAAAAAGAAAAAGCCCATCAGCCCATCAGCCCAATTGCCAAAAGGAAAGGAAAGAAAAATACTAAATTAAAAAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTATCGTCTCATTCTTTTTGTGCAGAAATGTTCAAGGAATAAATTGTTTTGCT

Coding sequence (CDS)

ATGTGCATTAATGCATCTTATGAAAAAGAAAAAGCCCATCAGCCCATCAGCCCAATTGCCAAAAGGAAAGGAAAGAAAAATACTAAATTAAAAAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAA

Protein sequence

MCINASYEKEKAHQPISPIAKRKGKKNTKLKNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPPTCHKIRMACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK*

Homology

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BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot
Match: Q2IM65 (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=290397 GN=rplI PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0


Query: 118 LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 177
           +++IL   +E LGK G+ V V PGY RN+L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNYLLPRGLAVSANPKNVKELEHQ---------- 60

Query: 178 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 237
             K V   K  K+K   +A A+RL    + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 238 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVK 291
            VAE      VQ+   ++ L  P+   GE+EVP++    +    GKV  T++ +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTLGEFEVPVKLHSEV---AGKVKVTVEAE 147

[Close]

BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot
Match: A7H6J2 (50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=rplI PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-08
Identity = 57/178 (32.02%), Postives = 83/178 (46.63%), Query Frame = 0


Query: 118 LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 177
           +++IL   +E LGK GE V V PGY RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGELVDVKPGYGRNFLLPRGLAVLANPKNVRELEHQ---------- 60

Query: 178 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 237
             K +   K  KMK   +A A+RL    + L R + ++             L  SVT  D
Sbjct: 61  --KAIATAKAAKMKASAQAVAKRLAETPITLSRKVGEQD-----------KLYGSVTAMD 120

Query: 238 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            VAE      +QI    ++LA P+   G++EVP++    +    GKV    KVKV ++
Sbjct: 121 -VAEALAARGLQIDRRAIDLAEPIKTTGDFEVPVKLHSEV---VGKV----KVKVEAE 147

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BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot
Match: B8D1C5 (50S ribosomal protein L9 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) OX=373903 GN=rplI PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-08
Identity = 53/174 (30.46%), Postives = 83/174 (47.70%), Query Frame = 0


Query: 118 LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 177
           ++VIL   ++KLGK G+ V V+ GY RN+L+P+ LA          +KE+ +I       
Sbjct: 1   MKVILKKDVKKLGKKGDVVSVSDGYARNYLIPRGLAEEATRGNITQLKEKEKI------- 60

Query: 178 VVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDI 237
                   KE K ++  + AR + SK       ++KEKF  +    E   L  SVT  DI
Sbjct: 61  --------KEKKHQQKIEEARDMASK-------LEKEKFVIKVKSGENGRLFGSVTTKDI 120

Query: 238 VAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKV 292
            AE  ++   +I    ++L   + A G Y VP++  +        V  TLK++V
Sbjct: 121 -AETVKKAGYKIDKRKIDLDDNIKALGTYRVPVKIFED-------VVATLKIQV 144

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BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot
Match: Q01QR6 (50S ribosomal protein L9 OS=Solibacter usitatus (strain Ellin6076) OX=234267 GN=rplI PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-08
Identity = 49/160 (30.63%), Postives = 79/160 (49.38%), Query Frame = 0


Query: 118 LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 177
           +EVIL   IE LG  G+ VKVAPGY RN L+PK +AV   E    +++++R+ +      
Sbjct: 1   MEVILREDIENLGTRGQLVKVAPGYARNFLLPKRMAVAATEANRKIVEQERQAH------ 60

Query: 178 VVKVVTLTKEDKMK-EYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 237
                 L KE K+K E E+ A+ +    +         +   +A +++ L    SVT  D
Sbjct: 61  ------LRKETKIKGEAEELAKIMTGVTV---------RISQKAGENDQLF--GSVTSKD 120

Query: 238 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSI 277
           I   +  Q +  I    + L  P+   GE+++P+R  K +
Sbjct: 121 IADALTAQ-NYNIDRRKIQLDEPIKTLGEFKIPVRLYKDV 136

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BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot
Match: B8J801 (50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) OX=455488 GN=rplI PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-08
Identity = 53/174 (30.46%), Postives = 81/174 (46.55%), Query Frame = 0


Query: 118 LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEE 177
           +++IL   +E LGK G+ V V PGY RN L+P+ LAV    K    ++ Q          
Sbjct: 1   MKLILREDVENLGKGGDLVDVKPGYGRNFLLPRGLAVTANPKNVKELEHQ---------- 60

Query: 178 VVKVVTLTKEDKMKEYEKA-ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDD 237
             K V   K  K+K   +A A+RL    + L+R + ++             L  SVT  D
Sbjct: 61  --KAVAAAKAAKLKASAQAVAKRLSETPVTLKRKVGEQD-----------KLYGSVTALD 120

Query: 238 IVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVK 291
            VAE      VQ+   ++ L  P+   GE+EVP++    +    GKV  T++ +
Sbjct: 121 -VAEALAARGVQLDRRSIVLDEPIKTVGEFEVPVKLHSEV---AGKVKVTVEAE 147

[Close]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL
Match: A0A0A0LAH8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G238230 PE=3 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 9.9e-153
Identity = 280/284 (98.59%), Postives = 281/284 (98.94%), Query Frame = 0


Query: 11  KAHQPISPIAKRKGKKNTKLKNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPP 70
           K  +PISPIAKRKGKKNTKL NQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPP
Sbjct: 5   KKKKPISPIAKRKGKKNTKLNNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPP 64

Query: 71  TCHKIRMACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLG 130
           TCHKIRMACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLG
Sbjct: 65  TCHKIRMACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLG 124

Query: 131 KAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKM 190
           KAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKM
Sbjct: 125 KAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKM 184

Query: 191 KEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIA 250
           KEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIA
Sbjct: 185 KEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIA 244

Query: 251 PENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
           PENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 245 PENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 288

[Close]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL
Match: A0A1S3C248 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 8.8e-109
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY RNALR IIKDT LHPSDQMMQPLLF+GQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLD KQLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 AKRLDCKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            SPLSACGEYEV LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 181 PSPLSACGEYEVALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL
Match: A0A6J1HYV2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467481 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 2.2e-104
Identity = 195/218 (89.45%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEVARQ S+QI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            +PL  CGEYEVPLRFPKSIPLPEGK+YWTLKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL
Match: A0A6J1FZ52 (50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449243 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 8.5e-104
Identity = 193/218 (88.53%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPK+LAVPNI+KYAYL+KEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLVKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEVARQ S+QI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            +PL  CGEYEVPLRFPKSIPLPEGK+YW+LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWSLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL
Match: A0A6J1CID3 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011756 PE=3 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 9.4e-103
Identity = 193/218 (88.53%), Postives = 205/218 (94.04%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MAC+QY RNALR IIKDT+LH SDQM+QPLLF  QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACVQYGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPG+FRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEE+VKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFR RA KDEPLALQSSVTVDD+VAEVARQ SVQI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVARQLSVQITPENLHL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            SPLS CGEYEVPLRFPKSIPLPEGK+YW LKVKVRSK
Sbjct: 181 PSPLSTCGEYEVPLRFPKSIPLPEGKIYWILKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. NCBI nr
Match: XP_004146229.1 (uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetical protein Csa_009654 [Cucumis sativus])

HSP 1 Score: 425.2 bits (1092), Expect = 4.5e-115
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
           ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 181 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. NCBI nr
Match: XP_008455982.1 (PREDICTED: 50S ribosomal protein L9 [Cucumis melo])

HSP 1 Score: 403.3 bits (1035), Expect = 1.8e-108
Identity = 208/218 (95.41%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY RNALR IIKDT LHPSDQMMQPLLF+GQGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLD KQLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 AKRLDCKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            SPLSACGEYEV LRFPKSIPLPEGKVYWTLKVKVRSK
Sbjct: 181 PSPLSACGEYEVALRFPKSIPLPEGKVYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. NCBI nr
Match: XP_038895552.1 (50S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 398.3 bits (1022), Expect = 5.8e-107
Identity = 201/218 (92.20%), Postives = 211/218 (96.79%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY RNALR IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGRNALRQIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPG+FRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPV+EEVVKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGFFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVDEEVVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            SPLS CGEYE+PLRFPKSIPLPEGK+YWTLKVKVRSK
Sbjct: 181 PSPLSTCGEYEIPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. NCBI nr
Match: XP_022968164.1 (uncharacterized protein LOC111467481 [Cucurbita maxima])

HSP 1 Score: 388.7 bits (997), Expect = 4.6e-104
Identity = 195/218 (89.45%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEVARQ S+QI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            +PL  CGEYEVPLRFPKSIPLPEGK+YWTLKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWTLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. NCBI nr
Match: KAG6574247.1 (hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.1 bits (993), Expect = 1.3e-103
Identity = 194/218 (88.99%), Postives = 208/218 (95.41%), Query Frame = 0


Query: 77  MACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETV 136
           MACIQY +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETV
Sbjct: 1   MACIQYGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETV 60

Query: 137 KVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKA 196
           KVAPGYFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKA
Sbjct: 61  KVAPGYFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKA 120

Query: 197 ARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNL 256
           A+RLDS QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEVARQ S+QI PENL+L
Sbjct: 121 AKRLDSTQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVARQLSIQITPENLHL 180

Query: 257 ASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK 295
            +PL  CGEYEVPLRFPKSIPLPEGK+YW+LKVKVRSK
Sbjct: 181 PAPLPTCGEYEVPLRFPKSIPLPEGKIYWSLKVKVRSK 218

[Close]

BLAST of CSPI03G19700 vs. TAIR 10
Match: AT5G53070.1 (Ribosomal protein L9/RNase H1 )

HSP 1 Score: 255.8 bits (652), Expect = 4.4e-68
Identity = 135/219 (61.64%), Postives = 173/219 (79.00%), Query Frame = 0


Query: 77  MACIQYCRNALRNII-KDTKLHPSDQMM-QPLLFSGQGVRHRKLEVILTTSIEKLGKAGE 136
           MA +   RN +R+++ + T  H  +  +  PLLF+ QGVR+RKLEVILTT IEKLGKAGE
Sbjct: 1   MAYVGQSRNVIRHVVSRGTAYHKYENAIHHPLLFACQGVRYRKLEVILTTGIEKLGKAGE 60

Query: 137 TVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVE-EEVVKVVTLTKEDKMKEY 196
           TVKVAPGYFRNHLMPK+LAVPNI+KYAYLI+EQR++Y   E +E VKVV  T E + KEY
Sbjct: 61  TVKVAPGYFRNHLMPKLLAVPNIDKYAYLIREQRKMYNHEEVKEEVKVVHKTSEVQTKEY 120

Query: 197 EKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPEN 256
           EKAA+RL +  LVLR+L+DKEKF+ R++KD+   +Q+ +T ++IV+EVARQ  V+I P+N
Sbjct: 121 EKAAKRLANANLVLRKLVDKEKFKNRSSKDDKPDVQTPITKEEIVSEVARQLCVKIDPDN 180

Query: 257 LNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVR 293
           + LA+PL   GEYEVPL+FPK+IPLP+G V W LKVKVR
Sbjct: 181 VVLAAPLETFGEYEVPLKFPKTIPLPQGTVQWILKVKVR 219

The following BLAST results are available for this feature:

BLAST of CSPI03G19700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2IM65	1.3e-08	30.46	50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) OX=2903...	[more]
A7H6J2	1.3e-08	32.02	50S ribosomal protein L9 OS=Anaeromyxobacter sp. (strain Fw109-5) OX=404589 GN=r...	[more]
B8D1C5	1.7e-08	30.46	50S ribosomal protein L9 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM...	[more]
Q01QR6	1.7e-08	30.63	50S ribosomal protein L9 OS=Solibacter usitatus (strain Ellin6076) OX=234267 GN=...	[more]
B8J801	2.9e-08	30.46	50S ribosomal protein L9 OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC B...	[more]

BLAST of CSPI03G19700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAH8	9.9e-153	98.59	50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G2382...	[more]
A0A1S3C248	8.8e-109	95.41	50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 ...	[more]
A0A6J1HYV2	2.2e-104	89.45	50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467...	[more]
A0A6J1FZ52	8.5e-104	88.53	50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1CID3	9.4e-103	88.53	50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of CSPI03G19700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146229.1	4.5e-115	100.00	uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetica...	[more]
XP_008455982.1	1.8e-108	95.41	PREDICTED: 50S ribosomal protein L9 [Cucumis melo]	[more]
XP_038895552.1	5.8e-107	92.20	50S ribosomal protein L9 [Benincasa hispida]	[more]
XP_022968164.1	4.6e-104	89.45	uncharacterized protein LOC111467481 [Cucurbita maxima]	[more]
KAG6574247.1	1.3e-103	88.99	hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G19700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53070.1	4.4e-68	61.64	Ribosomal protein L9/RNase H1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020070	Ribosomal protein L9, N-terminal	PFAM	PF01281	Ribosomal_L9_N	coord: 119..155 e-value: 3.1E-13 score: 49.1
IPR036935	Ribosomal protein L9, N-terminal domain superfamily	GENE3D	3.40.5.10		coord: 118..172 e-value: 2.6E-13 score: 51.2
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	GENE3D	3.10.430.100		coord: 188..293 e-value: 2.1E-6 score: 29.7
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	SUPERFAMILY	55653	Ribosomal protein L9 C-domain	coord: 192..291
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38
None	No IPR available	PANTHER	PTHR21368:SF24	BNAA02G10490D PROTEIN	coord: 64..293
IPR000244	Ribosomal protein L9	PANTHER	PTHR21368	50S RIBOSOMAL PROTEIN L9	coord: 64..293
IPR009027	Ribosomal protein L9/RNase H1, N-terminal	SUPERFAMILY	55658	L9 N-domain-like	coord: 118..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19700.1	CSPI03G19700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome