CSPI03G19460 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G19460
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L33-like
Location	Chr3: 15236169 .. 15237326 (-)
RNA-Seq Expression	CSPI03G19460
Synteny	CSPI03G19460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACATTTCATCCAAAATCATCACACCTCTCTTTATTGTGGTTTTATCTTAATCCATACAATCAAGACACGAGAAACATCGGGAATCAAGAATGAGTGAGTATCATAATCGAGAATCTCTGTGGGGGAGAATTCTTTTGGTGGGGTTTGTTTAAAGTGTATTTTTTCTCCTAACAAACAAAACAGAATCCGGACAAATTTAACATTCGGCGGTCTGTTGGAATTTTCAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGGTATGACAATTGTTTCTTTTGGATTGATTGGTTCTTTATCTCGACTATGTGTGGATTATCATCGTAATTTGCTAATCAAGAGAAGAGTGATGGATGGTATATGTTTTCGTATGTGTCTGTACATGTTTACCCCATTTATGCTAACCTATATGATATCCTTCAAAATTCCCGCATTCTGACTGGTATCAGTTCCGTATGGTATACAAAACATATACTTATCTGATTGAGATTGTATCTTTGAAATGAGATGATGGTGAAAATCTGATACATCTTCTGTTGGGATTATTCTACATGGAAGTTTGGTACATTTTCTGTTTTAATTTTAATTTTTACAACAATACAAAAGTCATTGGGAATAATGTTTGTGTAATTTTTTCGTTATGTTAATGTGATTGTTGATTTGATCATGTAACTAATTTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

mRNA sequence

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Protein sequence

MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK*

Homology

[Close]

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot
Match: B6IN38 (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot
Match: Q5FFJ4 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot
Match: Q5HBV6 (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot
Match: Q3YSN4 (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.7e-07
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot
Match: Q2W1A2 (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 116 IVRLSSTARTGFFY-AKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL
Match: A0A0A0LAF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL
Match: A0A5A7UZ21 (50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001000 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.8e-71
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL
Match: A0A1S3C284 (uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.8e-71
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL
Match: A0A6J1E4T6 (uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 8.3e-53
Identity = 117/160 (73.12%), Postives = 133/160 (83.12%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M  TI+R CLD  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K  L
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKESL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
           SQ A ERSIR+ SVICMA+RYAP  TKRKRLSRKRGGDP KKKKTRRKGG KDFKI+RLS
Sbjct: 61  SQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL
Match: A0A6J1E445 (uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430611 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 3.2e-52
Identity = 116/159 (72.96%), Postives = 132/159 (83.02%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M  TI+R CLD  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K  L
Sbjct: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKESL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
           SQ A ERSIR+ SVICMA+RYAP  TKRKRLSRKRGGDP KKKKTRRKGG KDFKI+RLS
Sbjct: 61  SQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEV 160
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEV
Sbjct: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEV 157

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: KAE8650541.1 (hypothetical protein Csa_009952 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 4.8e-79
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
           SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: XP_031739425.1 (uncharacterized protein LOC105434866 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 2.9e-76
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: XP_008456021.1 (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: KAA0058825.1 (50S ribosomal protein L33-like [Cucumis melo var. makuwa] >TYK11245.1 50S ribosomal protein L33-like [Cucumis melo var. makuwa])

HSP 1 Score: 276.6 bits (706), Expect = 1.4e-70
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: XP_038880588.1 (uncharacterized protein LOC120072240 [Benincasa hispida])

HSP 1 Score: 247.3 bits (630), Expect = 9.1e-62
Identity = 132/160 (82.50%), Postives = 144/160 (90.00%), Query Frame = 0


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDL +SCG RN FLSDS+SS   N +TFNS SFSA LSL++  +PN+KG L
Sbjct: 2   MATTIQRFCLDLAISCGKRNRFLSDSASSALPNLVTFNSLSFSAALSLSV--VPNIKGSL 61

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
           SQRA ERSIRYESVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 62  SQRARERSIRYESVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGKKDFKIVRLS 121

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADK+E++KYDPIANRHVLF EVK
Sbjct: 122 STARTGFFYAKKKSRKMADKVELKKYDPIANRHVLFIEVK 159

[Close]

BLAST of CSPI03G19460 vs. TAIR 10
Match: AT3G06320.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 112 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CSPI03G19460 vs. TAIR 10
Match: AT5G18790.1 (Ribosomal protein L33 family protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 112 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

The following BLAST results are available for this feature:

BLAST of CSPI03G19460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6IN38	2.3e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
Q5FFJ4	6.6e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
Q5HBV6	6.6e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
Q3YSN4	8.7e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=...	[more]
Q2W1A2	1.1e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of CSPI03G19460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8	1.4e-76	92.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=3 SV=1	[more]
A0A5A7UZ21	6.8e-71	91.25	50S ribosomal protein L33-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3C284	6.8e-71	91.25	uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=...	[more]
A0A6J1E4T6	8.3e-53	73.13	uncharacterized protein LOC111430611 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1E445	3.2e-52	72.96	uncharacterized protein LOC111430611 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CSPI03G19460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650541.1	4.8e-79	100.00	hypothetical protein Csa_009952 [Cucumis sativus]	[more]
XP_031739425.1	2.9e-76	92.49	uncharacterized protein LOC105434866 [Cucumis sativus]	[more]
XP_008456021.1	1.4e-70	91.25	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
KAA0058825.1	1.4e-70	91.25	50S ribosomal protein L33-like [Cucumis melo var. makuwa] >TYK11245.1 50S riboso...	[more]
XP_038880588.1	9.1e-62	82.50	uncharacterized protein LOC120072240 [Benincasa hispida]	[more]

BLAST of CSPI03G19460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06320.1	1.5e-09	60.00	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.5e-09	60.00	Ribosomal protein L33 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 110..159 e-value: 2.2E-16 score: 61.7
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 116..160 e-value: 1.3E-9 score: 38.3
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 111..160 e-value: 4.6E-12 score: 44.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..113
None	No IPR available	PANTHER	PTHR15238:SF1	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 111..160
None	No IPR available	PANTHER	PTHR15238	54S RIBOSOMAL PROTEIN L39, MITOCHONDRIAL	coord: 111..160
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 129..147
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 115..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19460.1	CSPI03G19460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome