CSPI03G19080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G19080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ferredoxin
Location	Chr3: 14832993 .. 14833934 (+)
RNA-Seq Expression	CSPI03G19080
Synteny	CSPI03G19080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAGCGTGTGGAAGCCATGGCCTCTCATTCCCATGGTCCCATGATTGTTGATAAAAGGACAGAGTATTAGCTCGTAGCCTTTCATTTCATTTCTTATCTACAGGTGTGGGCTCCTCTTCTACTACAAGCTGAGTAAGGCATACGAATAAGATCCAGAAGTCAGTGGCCATTCATCTTGGTAGAGCAGCAAAATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAGTTAGTTAAGTCTGCTTCAAGATCTAGTTATTTATCTCCATGAAATGATTCTGGCTTGCCTTCAGGTCCTTAATCAGATGTCTCATGGAGTTTTTTGATCACTTTTCTTAGTTTTACACCAACATTCTAAAACCAATTTAGGTTAGGATTTAAATTGATATATTTGTAAAAATTTTAGATTTAAATTGGTACAATTATTTAGTTTAGGGTTTAGATTGACATAACTTCAAAGTTCAGGGTTTAAATTGATGCACATTATCTTATACGACTCCAAAAATTTAGAGATATAAATTGATATTTGTT

mRNA sequence

GAGGAGCGTGTGGAAGCCATGGCCTCTCATTCCCATGGTCCCATGATTGTTGATAAAAGGACAGAGTATTAGCTCGTAGCCTTTCATTTCATTTCTTATCTACAGGTGTGGGCTCCTCTTCTACTACAAGCTGAGTAAGGCATACGAATAAGATCCAGAAGTCAGTGGCCATTCATCTTGGTAGAGCAGCAAAATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAGTTAGTTAAGTCTGCTTCAAGATCTAGTTATTTATCTCCATGAAATGATTCTGGCTTGCCTTCAGGTCCTTAATCAGATGTCTCATGGAGTTTTTTGATCACTTTTCTTAGTTTTACACCAACATTCTAAAACCAATTTAGGTTAGGATTTAAATTGATATATTTGTAAAAATTTTAGATTTAAATTGGTACAATTATTTAGTTTAGGGTTTAGATTGACATAACTTCAAAGTTCAGGGTTTAAATTGATGCACATTATCTTATACGACTCCAAAAATTTAGAGATATAAATTGATATTTGTT

Coding sequence (CDS)

ATGACCAGTTCACCAGCACTTTCCAGTGTGACATTGAACACCTCGTTTCTCCAGAAGCAGCCAGCAGCAAGGATAAGGTTGGTGTTGAACTTTGGCCAAGATTTGTTTGGGCTGAAGGGTGGCAGCAGCCGAGGTGGGCGAGTGATTGCAATGGCAGAGTACAACGTGAAGTTGATCACACCAACAGGAGAGACGGAGTTCAAGTGCCCGGATGACGAATACATTCTTGATCGAGCTGAGCAAATGGGATTTGATCTTCCATATTCATGTAGAGCAGGGTCTTGCTCTTCTTGTGCAGGGAAAGTAGTATCAGGGAAGGTGGATCAGTCAGATGGGAGCTACCTTGAGGATGATCAGATGGATGAAGGTTGGGTTTTAACTTGTGTTGCTTACCCGCAGTCAGATGTTGTCATTGAGACACACAAGGAGGAATATCTATTTAGTTAG

Protein sequence

MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLITPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLFS*

Homology

[Close]

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-47
Identity = 92/144 (63.89%), Postives = 107/144 (74.31%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLITPT 62
           ++ ALS  T++T+F  K P     L  N G+ LFGLK  +SR GRV AMA Y V L+TP 
Sbjct: 4   TTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLVTPE 63

Query: 63  GETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDE 122
           G+ E +CPDD YILD AE+ G DLPYSCRAGSCSSCAGKV SG V+Q DGS+L+DDQ+ E
Sbjct: 64  GKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKE 123

Query: 123 GWVLTCVAYPQSDVVIETHKEEYL 147
           GWVLTCVAYP  DV IETHKEE L
Sbjct: 124 GWVLTCVAYPTGDVTIETHKEEEL 146

[Close]

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 4.7e-47
Identity = 94/144 (65.28%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQ--PAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  ++TSFL++Q  P +   L     Q LFGLK  ++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C +D Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG +DQSD S+L+D+QM
Sbjct: 62  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTCVAYP SDVVIETHKEE
Sbjct: 122 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-47
Identity = 88/142 (61.97%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 6   ALSSVTLNTSFLQKQPA-ARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLITPTGE 65
           ++S+  ++TSF+ ++PA   ++ + N G+ LFGLK  S+ GG+V  MA Y VKLITP G 
Sbjct: 3   SVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLK--SANGGKVTCMASYKVKLITPDGP 62

Query: 66  TEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQMDEGW 125
            EF CPD+ YILD+AE+ G DLPYSCRAGSCSSCAGK+  G VDQ+DG++L+DDQ++EGW
Sbjct: 63  IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGW 122

Query: 126 VLTCVAYPQSDVVIETHKEEYL 147
           VLTCVAYPQSDV IETHKE  L
Sbjct: 123 VLTCVAYPQSDVTIETHKEAEL 142

[Close]

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-46
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPA-ARIRLVLNFG-QDLFGLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  + TSF+++ PA   +R + +   Q LFGLK G++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C DD Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG VDQSD S+L+D+Q+
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTC AYP SDV IETHKEE
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot
Match: P09911 (Ferredoxin-1, chloroplastic OS=Pisum sativum OX=3888 GN=PETF PE=1 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-45
Identity = 89/147 (60.54%), Postives = 107/147 (72.79%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQP-AARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLI 60
           M ++PAL    ++TSFL+ QP    +     F     GLK    RG   +AMA Y VKL+
Sbjct: 1   MATTPALYGTAVSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLV 60

Query: 61  TPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQ 120
           TP G  EF+CP D YILD AE++G DLPYSCRAGSCSSCAGKVV G+VDQSDGS+L+D+Q
Sbjct: 61  TPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQ 120

Query: 121 MDEGWVLTCVAYPQSDVVIETHKEEYL 147
           ++ G+VLTCVAYP SDVVIETHKEE L
Sbjct: 121 IEAGFVLTCVAYPTSDVVIETHKEEDL 147

[Close]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL
Match: A0A0A0LAD3 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.4e-77
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           MTSSPALSSVTLNTSFLQKQP  RIRLVLNFGQDLF LKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           DEGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL
Match: A0A5D3CHZ7 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00080 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M SSPALSS TLNTSFL+KQPA R+  VLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GETEFKC DD+YILDRAE+MGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYL++DQM
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL
Match: A0A1S3C2F7 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.7e-72
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M SSPALSS TLNTSFL+KQPA R+  VLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GETEFKC DD+YILDRAE+MGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYL++DQM
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL
Match: A0A6J1C815 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.1e-58
Identity = 114/148 (77.03%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M SS ALS   ++TSFL+KQPA  +R V NFGQ LFGLKGG SRGGRV AMA Y VKLIT
Sbjct: 1   MASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGLKGG-SRGGRVTAMATYKVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD Y+LD+AE+ GFDLPYSCRAGSCSSCAGKVVSGKVDQSD S+L+DDQ+
Sbjct: 61  PEGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQL 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSDIVIETHKEEELVS 147

[Close]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL
Match: A0A6J1JBU5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111483022 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 106/148 (71.62%), Postives = 124/148 (83.78%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M S+P LS  T+NT  LQKQPA  +R V NFGQ LFGLK  S+ GGR++A A Y+VKL+T
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-DSTLGGRLVAKAVYSVKLLT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD YILD+AE++G DLPYSCRAGSCSSCAGKVV GKV+QSDGSYL+DDQ+
Sbjct: 61  PEGEKEFMCPDDVYILDQAEEIGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSYLDDDQI 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           ++GWVLTCVAYPQS++VIETHKEE L S
Sbjct: 121 EDGWVLTCVAYPQSNIVIETHKEEELVS 147

[Close]

BLAST of CSPI03G19080 vs. NCBI nr
Match: XP_004146260.1 (ferredoxin [Cucumis sativus] >KGN57597.1 hypothetical protein Csa_010533 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 7.1e-77
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           MTSSPALSSVTLNTSFLQKQP  RIRLVLNFGQDLF LKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MTSSPALSSVTLNTSFLQKQPTTRIRLVLNFGQDLFKLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM
Sbjct: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           DEGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CSPI03G19080 vs. NCBI nr
Match: XP_008456053.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038972.1 ferredoxin-like [Cucumis melo var. makuwa] >TYK11175.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 134/148 (90.54%), Postives = 141/148 (95.27%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M SSPALSS TLNTSFL+KQPA R+  VLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT
Sbjct: 1   MASSPALSSATLNTSFLRKQPATRLGSVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GETEFKC DD+YILDRAE+MGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYL++DQM
Sbjct: 61  PAGETEFKCQDDDYILDRAEEMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLDEDQM 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSDVVIETHKEEYLFS
Sbjct: 121 NEGWVLTCVAYPQSDVVIETHKEEYLFS 148

[Close]

BLAST of CSPI03G19080 vs. NCBI nr
Match: XP_038891717.1 (ferredoxin-A-like [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-60
Identity = 117/148 (79.05%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M S PALS  T+NTSFL+KQPA R+R   NF Q LFGLKGG SRGGRVIAMAEYNVKLIT
Sbjct: 1   MASIPALSGATMNTSFLRKQPATRLRSASNFSQGLFGLKGG-SRGGRVIAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDDEYILDRA+ +G DLPYSCRAGSCSSCAGKV+ GKVDQSDG++L+DDQ 
Sbjct: 61  PEGEKEFSCPDDEYILDRADDLGIDLPYSCRAGSCSSCAGKVIEGKVDQSDGNFLDDDQA 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQS+VVIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSNVVIETHKEEELVS 147

[Close]

BLAST of CSPI03G19080 vs. NCBI nr
Match: XP_023552303.1 (ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG7015006.1 hypothetical protein SDJN02_22637, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 3.0e-59
Identity = 114/148 (77.03%), Postives = 128/148 (86.49%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M S+P LS  T+NT  LQKQPA  +R V NFGQ LFGLK GSSRGGR++AMAEYNVKLIT
Sbjct: 1   MASAPVLSGATINTILLQKQPATSLRSVSNFGQGLFGLK-GSSRGGRLVAMAEYNVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD Y+LD+AE+MG DLPYSCRAGSCSSCAGKVV GKV+QSDGS+L+DDQ+
Sbjct: 61  PEGEKEFVCPDDVYVLDQAEEMGIDLPYSCRAGSCSSCAGKVVGGKVEQSDGSFLDDDQI 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSDIVIETHKEEDLVS 147

[Close]

BLAST of CSPI03G19080 vs. NCBI nr
Match: XP_022136608.1 (ferredoxin [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 4.3e-58
Identity = 114/148 (77.03%), Postives = 126/148 (85.14%), Query Frame = 0


Query: 1   MTSSPALSSVTLNTSFLQKQPAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 60
           M SS ALS   ++TSFL+KQPA  +R V NFGQ LFGLKGG SRGGRV AMA Y VKLIT
Sbjct: 1   MASSTALSGAMMSTSFLRKQPAGGLRSVSNFGQGLFGLKGG-SRGGRVTAMATYKVKLIT 60

Query: 61  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 120
           P GE EF CPDD Y+LD+AE+ GFDLPYSCRAGSCSSCAGKVVSGKVDQSD S+L+DDQ+
Sbjct: 61  PEGEKEFSCPDDVYVLDQAEEQGFDLPYSCRAGSCSSCAGKVVSGKVDQSDNSFLDDDQL 120

Query: 121 DEGWVLTCVAYPQSDVVIETHKEEYLFS 149
           +EGWVLTCVAYPQSD+VIETHKEE L S
Sbjct: 121 EEGWVLTCVAYPQSDIVIETHKEEELVS 147

[Close]

BLAST of CSPI03G19080 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-48
Identity = 94/144 (65.28%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQ--PAARIRLVLNFGQDLFGLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  ++TSFL++Q  P +   L     Q LFGLK  ++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C +D Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG +DQSD S+L+D+QM
Sbjct: 62  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTCVAYP SDVVIETHKEE
Sbjct: 122 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of CSPI03G19080 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-47
Identity = 93/144 (64.58%), Postives = 111/144 (77.08%), Query Frame = 0


Query: 3   SSPALSSVTLNTSFLQKQPA-ARIRLVLNFG-QDLFGLKGGSSRGGRVIAMAEYNVKLIT 62
           +S ALSS  + TSF+++ PA   +R + +   Q LFGLK G++RGGRV AMA Y VK IT
Sbjct: 2   ASTALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFIT 61

Query: 63  PTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSGKVDQSDGSYLEDDQM 122
           P GE E +C DD Y+LD AE+ G DLPYSCRAGSCSSCAGKVVSG VDQSD S+L+D+Q+
Sbjct: 62  PEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQI 121

Query: 123 DEGWVLTCVAYPQSDVVIETHKEE 145
            EG+VLTC AYP SDV IETHKEE
Sbjct: 122 GEGFVLTCAAYPTSDVTIETHKEE 145

[Close]

BLAST of CSPI03G19080 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-36
Identity = 72/113 (63.72%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 36  FGLKGGSSRGGRVIAMAEYNVKLITPTG-ETEFKCPDDEYILDRAEQMGFDLPYSCRAGS 95
           FGLK  ++ GG  ++ A Y VKL+ P G E EF+  DD+YILD AE+ G DLPYSCRAG+
Sbjct: 44  FGLKCSANSGGATMS-AVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGA 103

Query: 96  CSSCAGKVVSGKVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLF 148
           CS+CAG++VSG VDQSDGS+LED  +++G+VLTCVAYPQSD VI THKE  LF
Sbjct: 104 CSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155

[Close]

BLAST of CSPI03G19080 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 117.9 bits (294), Expect = 7.2e-27
Identity = 56/112 (50.00%), Postives = 76/112 (67.86%), Query Frame = 0


Query: 36  FGLKGGSSRGGRVIAMAEYNVKLITPTG-ETEFKCPDDEYILDRAEQMGFDLPYSCRAGS 95
           FGL       G+V A     VKLI+P G E E +  +D  IL+ AE  G +LPYSCR+G+
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 96  CSSCAGKVVSGKVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYL 147
           C +C GK+VSGKVDQS GS+LE++Q+ +G++LTC+A P  D V+ THK+  L
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSDL 147

[Close]

BLAST of CSPI03G19080 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 45/103 (43.69%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 46  GRVIAMAEYNVKLITPTGETEFKCPDDEYILDRAEQMGFDLPYSCRAGSCSSCAGKVVSG 105
           GR+IA A Y V +      TE +   DE IL +A   G D+PY C  G C +C  K+V+G
Sbjct: 46  GRIIARA-YKVVVEHDGKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTG 105

Query: 106 KVDQSDGSYLEDDQMDEGWVLTCVAYPQSDVVIETHKEEYLFS 149
            VDQS G  L DD ++ G+ L C +YP SD  I+   EE L S
Sbjct: 106 TVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELLS 146

The following BLAST results are available for this feature:

BLAST of CSPI03G19080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04683	2.7e-47	63.89	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
O04090	4.7e-47	65.28	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
Q9ZTS2	7.9e-47	61.97	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
P16972	3.0e-46	64.58	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
P09911	2.0e-45	60.54	Ferredoxin-1, chloroplastic OS=Pisum sativum OX=3888 GN=PETF PE=1 SV=2	[more]

BLAST of CSPI03G19080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAD3	3.4e-77	97.97	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_3G222790 PE=3 SV=1	[more]
A0A5D3CHZ7	9.7e-72	90.54	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00080 PE=...	[more]
A0A1S3C2F7	9.7e-72	90.54	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496101 PE=3 SV=1	[more]
A0A6J1C815	2.1e-58	77.03	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008273 PE=3 SV=1	[more]
A0A6J1JBU5	1.1e-54	71.62	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111483022 PE=3 SV=1	[more]

BLAST of CSPI03G19080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146260.1	7.1e-77	97.97	ferredoxin [Cucumis sativus] >KGN57597.1 hypothetical protein Csa_010533 [Cucumi...	[more]
XP_008456053.1	2.0e-71	90.54	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038972.1 ferredoxin-like [Cucumis...	[more]
XP_038891717.1	1.6e-60	79.05	ferredoxin-A-like [Benincasa hispida]	[more]
XP_023552303.1	3.0e-59	77.03	ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG7015006.1 hypothetical protein ...	[more]
XP_022136608.1	4.3e-58	77.03	ferredoxin [Momordica charantia]	[more]

BLAST of CSPI03G19080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	3.3e-48	65.28	ferredoxin 1	[more]
AT1G60950.1	2.1e-47	64.58	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	1.7e-36	63.72	ferredoxin 3	[more]
AT5G10000.1	7.2e-27	50.00	ferredoxin 4	[more]
AT4G14890.1	2.0e-16	43.69	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 53..146 e-value: 8.6E-48 score: 158.1
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 51..147 e-value: 3.2E-37 score: 128.3
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 62..133 e-value: 5.3E-19 score: 68.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 54..144 score: 12.636289
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 56..139 e-value: 3.87522E-32 score: 107.866
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 1..147
None	No IPR available	PANTHER	PTHR43112:SF20	FERREDOXIN	coord: 1..147
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 90..98
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 34..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19080.1	CSPI03G19080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006124	ferredoxin metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding