CSPI03G17790 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G17790
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 13354331 .. 13355217 (+)
RNA-Seq Expression	CSPI03G17790
Synteny	CSPI03G17790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATTGCCAGTTGGATTCTTTTACGCCTCTCGATGAATTTACATTCATGCACTGCCTCCAGCCTGTCCGTCTCCCCAACGTCTATTTCCACCTTCCCCCCTTTTCCCATTTTGCCCCTACCTCCCGAGGTCTTTTATTGTAATTTGGATATTATTCGTTACCTACTGTACCTAAGCTGTAACGCTCTTTGTTTCGTAGCAAAATTGAGAAGAAAAAAGAAAAAAGAAAAAGAAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAAAGAAAATAAAAGTTCCCTCCGCTGTAACACACGTTTTCATTTAAAATCCAGAGCTTTTTTACCTCCCTCTTATCCTACGGATTTTTGTACCCAGTGTATCTCACGCTCCAATGTATAACAGCTATATGGTGTTCATAAACCCACTCCTACCACCTCACAACTCAACTTAATTTACACGGTTTGTACTGAGTTATTATAGTTGAGTTGATTAATTGTGTTAATTTATTGGGTTGGTTTAAAAGAAAGTACTTGAGTGGGTTAAGTCAAAGGGAAGCGCGTGCCTAGGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGCTTCTTTTTTCCTTTTCTATCCATCTCACCTCCCCCTCAAGATTCTGTTCTCATCAACTTTTCCATGGCTGAGTTGACTCAGTCGGAGGTCTACTCGCCCGACAGTCTGCACGTCTAG

mRNA sequence

ATGCCCATTGCCAGTTGGATTCTTTTACGCCTCTCGATGAATTTACATTCATGCACTGCCTCCAGCCTGTCCGTCTCCCCAACGTCTATTTCCACCTTCCCCCCTTTTCCCATTTTGCCCCTACCTCCCGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGCTTCTTTTTTCCTTTTCTATCCATCTCACCTCCCCCTCAAGATTCTGTTCTCATCAACTTTTCCATGGCTGAGTTGACTCAGTCGGAGGTCTACTCGCCCGACAGTCTGCACGTCTAG

Coding sequence (CDS)

ATGCCCATTGCCAGTTGGATTCTTTTACGCCTCTCGATGAATTTACATTCATGCACTGCCTCCAGCCTGTCCGTCTCCCCAACGTCTATTTCCACCTTCCCCCCTTTTCCCATTTTGCCCCTACCTCCCGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGGGGTTTTGAGGAATGCTTCTTTTTTCCTTTTCTATCCATCTCACCTCCCCCTCAAGATTCTGTTCTCATCAACTTTTCCATGGCTGAGTTGACTCAGTCGGAGGTCTACTCGCCCGACAGTCTGCACGTCTAG

Protein sequence

MPIASWILLRLSMNLHSCTASSLSVSPTSISTFPPFPILPLPPEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEECFFFPFLSISPPPQDSVLINFSMAELTQSEVYSPDSLHV*

Homology

[Close]

BLAST of CSPI03G17790 vs. NCBI nr
Match: MUG32872.1 (hypothetical protein [Psychrobacter sanguinis])

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-11
Identity = 38/63 (60.32%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 46  WGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEE 105
           WGF  WGF  WGF  WGF  WGF  WGF  WGF  W F  WGF  WGF  WGF  WGF  
Sbjct: 30  WGFSIWGFSIWGFSIWGFSIWGFSIWGFSIWGFSIWAFSIWGFNTWGFSTWGFSTWGFSI 89

Query: 106 WGF 109
           WGF
Sbjct: 90  WGF 92

[Close]

BLAST of CSPI03G17790 vs. NCBI nr
Match: MBI4320284.1 (pentapeptide repeat-containing protein [Chloroflexi bacterium])

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-10
Identity = 55/70 (78.57%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 44  EEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGF 103
           EE GFEE GFEE GFEE GFEE GFEE GFEE GFEE GFEE GFEE GFEE GFEE GF
Sbjct: 149 EEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGFEEAGF 208

Query: 104 EEWGFEECFF 114
           EE GFEE  F
Sbjct: 209 EEAGFEEAGF 218

[Close]

BLAST of CSPI03G17790 vs. NCBI nr
Match: KAF5104859.1 (hypothetical protein DV451_000252 [Geotrichum candidum])

HSP 1 Score: 69.3 bits (168), Expect = 3.2e-08
Identity = 27/67 (40.30%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 44  EEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGF 103
           +EW + EW ++EW + EW ++EW ++EW ++EW ++EW ++EW ++EW ++EW ++EW +
Sbjct: 49  QEWEYPEWEYQEWEYPEWEYQEWVYQEWVYQEWEYQEWVYQEWVYQEWEYQEWEYQEWVY 108

Query: 104 EEWGFEE 111
           +EW ++E
Sbjct: 109 QEWVYQE 115

[Close]

BLAST of CSPI03G17790 vs. NCBI nr
Match: KAF5108749.1 (hypothetical protein DV453_002140 [Geotrichum candidum])

HSP 1 Score: 64.7 bits (156), Expect = 7.8e-07
Identity = 25/71 (35.21%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 44  EEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGF----EEWGFEEWGFEEWGFEEWGFE 103
           +EW +++W ++EW ++EW ++EW ++EW ++EW +    +EW ++EW ++EW ++EW ++
Sbjct: 9   QEWEYQKWEYQEWEYQEWEYQEWEYQEWEYQEWEYXXXXQEWEYQEWEYQEWEYQEWEYQ 68

Query: 104 EWGFEEWGFEE 111
           EW ++EW + +
Sbjct: 69  EWEYQEWEYRD 79

[Close]

BLAST of CSPI03G17790 vs. NCBI nr
Match: PJJ97036.1 (hypothetical protein CO615_10515 [Xanthomonadaceae bacterium NML75-0749])

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-06
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 40  PLPPEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFEEWGFE 99
           PL  E +GFE +GFE +GFE +GFE +GF+ +GF+ +GF+ +GF+ +GFE +GFE +GFE
Sbjct: 6   PLRFESFGFESFGFEAFGFEAFGFEAFGFDTFGFDTFGFDTFGFDTFGFESFGFESFGFE 65

Query: 100 EWGFEEWGFEECFFFPF 117
            +GFE +GFE   F  F
Sbjct: 66  SFGFEAFGFESFGFESF 82

The following BLAST results are available for this feature:

BLAST of CSPI03G17790 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G17790 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G17790 vs. NCBI nr


Match Name	E-value	Identity	Description
MUG32872.1	8.9e-11	60.32	hypothetical protein [Psychrobacter sanguinis]	[more]
MBI4320284.1	3.4e-10	78.57	pentapeptide repeat-containing protein [Chloroflexi bacterium]	[more]
KAF5104859.1	3.2e-08	40.30	hypothetical protein DV451_000252 [Geotrichum candidum]	[more]
KAF5108749.1	7.8e-07	35.21	hypothetical protein DV453_002140 [Geotrichum candidum]	[more]
PJJ97036.1	5.0e-06	51.95	hypothetical protein CO615_10515 [Xanthomonadaceae bacterium NML75-0749]	[more]

BLAST of CSPI03G17790 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G17790.1	CSPI03G17790.1	mRNA