CSPI03G17540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G17540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Integrase catalytic domain-containing protein
Location	Chr3: 13152873 .. 13154040 (+)
RNA-Seq Expression	CSPI03G17540
Synteny	CSPI03G17540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTAAATGGATTTTCAAATGAAAAATAAAGACCAGTAGGTCAATAGATAAATATAAGGCAAGACGTGTCGCCAAAGGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGGTTTGTTTTTTTCGGTCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGACATGAAAAATTTGACAGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATATATAGGTAGCAATATCAACATTATTAAGGAAACCAAAAAAATGTTGGCTAAAAAATTTGAGATGAAAGACATGGGTGTTGCGCAGATGTTATTCTAGGTATCAAAATTTCTAGAACCCTACAAGAGTTAGTGCTATCTCAATCACATTATATTGATAAAATAGTGAAGAAATATACAAAACATGACATTGTGATTCCAAGGACCCCAATTGATGGTAGTCTCCATTCAAGTAAAAATAATGGAGATAGTATAGCACAATTAGAATACTCTCGCATCATTGGTAGTTTAATGTATATCATGAGTTGTACACGTCTTGATATAGCGTATGAGATAAGCAAGTTAAGTTGCTATACAAGTAATCCAGGTCATGATCATTGGAAAGTTATCTTGAGAATTTTGGGATACCTAAAGCATACTAAAAATTATGGATTACACTATACTCAATATCCTGCTGTACTTGAAGGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

mRNA sequence

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

Coding sequence (CDS)

ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCCACTTGGTTGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGATTTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGTGTAATGATAGCCAATGGGTTTAAAATCAATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGTTACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

Protein sequence

MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGCYKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKSNENDHVIAIVKPIGYRALKAPNPPVVTFLPLEAVLFLENLSNKHV

Homology

[Close]

BLAST of CSPI03G17540 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.7e-16
Identity = 41/130 (31.54%), Postives = 75/130 (57.69%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           +S PE     +A+  E++S+  N  ++L++LP G  PL C                    
Sbjct: 818 LSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKAR 877

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 106
                ++Q++ +D+ + +SP+ ++TSIR +++++A    E+ Q+DVKT FL+G+L+EEIY
Sbjct: 878 LVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIY 937

[Close]

BLAST of CSPI03G17540 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 2.4e-15
Identity = 41/135 (30.37%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 9    WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQ 68
            WEEA+NTE+ +   N+ W +   P   N +                           + Q
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 69   QEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVM 119
            + ++DY +T++P+ RI+S R ++++   +  ++HQMDVKT FLNG L EEIY++ P+G+ 
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGIS 1025

[Close]

BLAST of CSPI03G17540 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.8e-11
Identity = 34/119 (28.57%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 9    WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YK 68
            W +A+ +E+ + + NH W+L+  P  +   +GC                         Y 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 69   QQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEG 102
            Q+  LDY +T+SP+ + TSIR+++ ++    + I Q+DV   FL G L +E+Y+  P G
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPG 1069

[Close]

BLAST of CSPI03G17540 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 33/119 (27.73%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 9    WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YK 68
            W  A+ +E+ + + NH W+L+  P  +   +GC                         Y 
Sbjct: 968  WRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYN 1027

Query: 69   QQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEG 102
            Q+  LDY +T+SP+ + TSIR+++ ++    + I Q+DV   FL G L +++Y+  P G
Sbjct: 1028 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPG 1086

[Close]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL
Match: A0A438E3U6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3747 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.5e-41
Identity = 92/186 (49.46%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 547 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKADGSTDKYKAR 606

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  EIHQMDVKT FLNGELDEEIY
Sbjct: 607 LVAKGYKQREGLDYFDTYSPVSRITSIRMLIAIAAINNLEIHQMDVKTAFLNGELDEEIY 666

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKCVY K+ 
Sbjct: 667 MDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCVYVKNT 726

[Close]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL
Match: A0A438G6X1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1536 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 91/186 (48.92%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 662 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKANGSIDKYKAR 721

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP+++ITSIRMLIAI+A++  EIHQMDVKT FLNGELDEEIY
Sbjct: 722 LVAKGYKQREGLDYFDTYSPVSQITSIRMLIAIAAINNLEIHQMDVKTAFLNGELDEEIY 781

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKCVY K+ 
Sbjct: 782 MDQPEGFIAPGQEGKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCVYVKNT 841

[Close]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL
Match: A5B5M4 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_027195 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 83/153 (54.25%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                    
Sbjct: 97  MSTPEAPFWKEAINNEIESIMHNHTWKLMDLPPGNKPLGCKWIFKKKMKPDGTIDKYKAR 156

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +IHQMD KT FLNGEL+EEIY
Sbjct: 157 LVAKGFKQKEGLDFFDTYSPVTRITSIRXLIARTTLHNLKIHQMDAKTTFLNGELEEEIY 216

Query: 121 IQSPEGVMIANGFKINECDKCVYFKSNENDHVI 129
           ++ PE     + FK+NECDKCVY K+ ++++VI
Sbjct: 217 MEQPE-----DDFKMNECDKCVYTKNTQSEYVI 244

[Close]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL
Match: A0A438G546 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3124 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.9e-40
Identity = 90/186 (48.39%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 628 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKADGSIDKYKAR 687

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  +IHQMDVKT FLNGELDEEIY
Sbjct: 688 LVAKGYKQREGLDYFDTYSPVSRITSIRMLIAIAAINNHDIHQMDVKTTFLNGELDEEIY 747

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKC+Y K+ 
Sbjct: 748 MDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCIYVKNT 807

[Close]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL
Match: A0A2N9HXG0 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44241 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 91/186 (48.92%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS PEAP W+EAVN+E++SI+ NH WEL+DLP G  PLG                     
Sbjct: 432 MSMPEAPLWKEAVNSEIESILQNHTWELVDLPPGCKPLGYKWIFKRKMKADGSIDKYKAR 491

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E +DYFDTYSP+TRITSIRMLIAI+AL+  EIHQMDVKT FLNGELDEEIY
Sbjct: 492 LVVKGYKQKEGVDYFDTYSPVTRITSIRMLIAIAALYNLEIHQMDVKTAFLNGELDEEIY 551

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           ++ PEG                                  M++NGF+INECDKCVY K+ 
Sbjct: 552 MEQPEGFIVPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMSNGFRINECDKCVYIKNT 611

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: RVW42300.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 176.8 bits (447), Expect = 1.6e-40
Identity = 92/186 (49.46%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 547 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKADGSTDKYKAR 606

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  EIHQMDVKT FLNGELDEEIY
Sbjct: 607 LVAKGYKQREGLDYFDTYSPVSRITSIRMLIAIAAINNLEIHQMDVKTAFLNGELDEEIY 666

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKCVY K+ 
Sbjct: 667 MDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCVYVKNT 726

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: RVW67960.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 91/186 (48.92%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 662 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKANGSIDKYKAR 721

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP+++ITSIRMLIAI+A++  EIHQMDVKT FLNGELDEEIY
Sbjct: 722 LVAKGYKQREGLDYFDTYSPVSQITSIRMLIAIAAINNLEIHQMDVKTAFLNGELDEEIY 781

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKCVY K+ 
Sbjct: 782 MDQPEGFIAPGQEGKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCVYVKNT 841

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: CAN63175.1 (hypothetical protein VITISV_027195 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 83/153 (54.25%), Postives = 107/153 (69.93%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                    
Sbjct: 97  MSTPEAPFWKEAINNEIESIMHNHTWKLMDLPPGNKPLGCKWIFKKKMKPDGTIDKYKAR 156

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +IHQMD KT FLNGEL+EEIY
Sbjct: 157 LVAKGFKQKEGLDFFDTYSPVTRITSIRXLIARTTLHNLKIHQMDAKTTFLNGELEEEIY 216

Query: 121 IQSPEGVMIANGFKINECDKCVYFKSNENDHVI 129
           ++ PE     + FK+NECDKCVY K+ ++++VI
Sbjct: 217 MEQPE-----DDFKMNECDKCVYTKNTQSEYVI 244

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: RVW67328.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 5.9e-40
Identity = 90/186 (48.39%), Postives = 110/186 (59.14%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                    
Sbjct: 628 MSSPEASYWKEAINSEIESILQNHTWELVDLPPGTKTLGCKWIFKKKMKADGSIDKYKAR 687

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  +IHQMDVKT FLNGELDEEIY
Sbjct: 688 LVAKGYKQREGLDYFDTYSPVSRITSIRMLIAIAAINNHDIHQMDVKTTFLNGELDEEIY 747

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           +  PEG                                  MI+NGFKINECDKC+Y K+ 
Sbjct: 748 MDQPEGFIAPGQERKVCKLVKSLYGLKQAPKQWHEKFDNAMISNGFKINECDKCIYVKNT 807

[Close]

BLAST of CSPI03G17540 vs. NCBI nr
Match: CAN63736.1 (hypothetical protein VITISV_037249 [Vitis vinifera])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-39
Identity = 88/186 (47.31%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 1   MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------- 60
           MS+ EAP+W+EA+N+E++SIMHNH W+L+DLP GN  LGC                    
Sbjct: 486 MSTLEAPFWKEAINSEIESIMHNHTWKLVDLPPGNKHLGCKWIFKKKMKPDGTIDKYKAR 545

Query: 61  -----YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIY 120
                +KQ+E LD+FDTYSP+TRITSIR+LIAI ALH  EIHQMDVKT FLNGEL+E+IY
Sbjct: 546 LVAKGFKQKESLDFFDTYSPVTRITSIRVLIAIVALHNLEIHQMDVKTTFLNGELEEKIY 605

Query: 121 IQSPEG---------------------------------VMIANGFKINECDKCVYFKSN 129
           ++ PEG                                 VM++N FKINE DKCVY K+ 
Sbjct: 606 MEQPEGFVALGQEKKVCNLIKSLYGLKQAPKQWHEKFDKVMLSNDFKINESDKCVYIKNT 665

[Close]

BLAST of CSPI03G17540 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-20
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 9   WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQ 68
           W  A++ E+ ++   H WE+  LP    P+GC                         Y Q
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  QEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVM 122
           QE +D+ +T+SP+ ++TS+++++AISA++ F +HQ+D+   FLNG+LDEEIY++ P G  
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

The following BLAST results are available for this feature:

BLAST of CSPI03G17540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.7e-16	31.54	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.4e-15	30.37	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	7.8e-11	28.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-10	27.73	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI03G17540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438E3U6	7.5e-41	49.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438G6X1	2.2e-40	48.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5B5M4	2.2e-40	54.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A438G546	2.9e-40	48.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9HXG0	1.4e-39	48.92	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of CSPI03G17540 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW42300.1	1.6e-40	49.46	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW67960.1	4.5e-40	48.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN63175.1	4.5e-40	54.25	hypothetical protein VITISV_027195 [Vitis vinifera]	[more]
RVW67328.1	5.9e-40	48.39	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN63736.1	5.0e-39	47.31	hypothetical protein VITISV_037249 [Vitis vinifera]	[more]

BLAST of CSPI03G17540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.9e-20	32.61	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 41..118 e-value: 1.3E-19 score: 70.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G17540.1	CSPI03G17540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005622	intracellular anatomical structure
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016740	transferase activity