CSPI03G17460 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G17460
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
LocationChr3: 13084354 .. 13085077 (-)
RNA-Seq ExpressionCSPI03G17460
SyntenyCSPI03G17460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGGTACAACACCAACTACCAAGCGTCAATAAAAAACACTCCTTACGCTGTAGTTTAAGGACAACAACCGCCACCTATCATTTCTTATGGCCAAGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGGTATATCTGAAATTACAGCCCTACAGACAGCAATCAGTCACTAAGAAGCGATGTGAAAGGTTATCTCCCAAATATTTTTGGCCCTATATGGTGTTGGGTAGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGAAAGGATCAGCCAAGCCATGAAGCAACATGAGAGTCCTACGCTATGCTTACTAACCAA

mRNA sequence

ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGAAAGGATCAGCCAAGCCATGAAGCAACATGAGAGTCCTACGCTATGCTTACTAACCAA

Coding sequence (CDS)

ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGGCACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCGATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTTAAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGATGCTGAACGAGATTGGGAATATTTAATTCAATGA

Protein sequence

MGNQRSLTIAWNYTYGVFVTRNHKHGVIKLHGPSIAGTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGVGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ*
Homology
[Close]
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match: A0A5D3DFB4 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00650 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.6e-43
Identity = 94/157 (59.87%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 37  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
           GTT NDSVE+QLQ+RDEML ALK HL+HAQE++KK ++VHRRDV F IG           
Sbjct: 119 GTTPNDSVEHQLQSRDEMLAALKRHLQHAQERMKKFANVHRRDVVFDIGDRVFLKLQHYR 178

Query: 97  -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                    VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 179 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAVGDKHQV 238

Query: 157 QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
            PDI M+NDQME V+EPEN+TQ+RWN AERDWEYL+Q
Sbjct: 239 YPDIAMINDQMELVMEPENVTQLRWNKAERDWEYLVQ 275

[Close]
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match: A0A5A7SR72 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G001730 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 5.0e-42
Identity = 92/157 (58.60%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG           
Sbjct: 933  GTTLNDSVEQQLQSRDEMLKVLKRHLQHAQERMKKFANIHRRDVVFDIGDRVYLKLQPYR 992

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 993  QRSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 1052

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+TM+NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 1053 YPDVTMINDQMELVLEPENVLQRRWNEAERDWEYLVQ 1089

[Close]
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match: A0A5D3DH98 (Putative membrane protein YjcL-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001000 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 8.5e-42
Identity = 91/157 (57.96%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
           GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG           
Sbjct: 378 GTTPNDSVEQQLQSRDEMLKVLKRHLQHAQERMKKFANIHRRDVVFDIGDRVYLKLQPYR 437

Query: 97  -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                    VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 438 QRSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 497

Query: 157 QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
            PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 498 YPDVTLINDQMELVLEPENVLQRRWNEAERDWEYLVQ 534

[Close]
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match: A0A5A7V5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001010 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-41
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE+QLQ+R+EML ALK HL+HAQE++KK  DVHRRDV F IG           
Sbjct: 1001 GTTPNDSVEHQLQSRNEMLAALKRHLQHAQERMKKFVDVHRRDVVFDIGDRVYLKLQPYR 1060

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEV+YLLDLPET KIHPVF+VSQLKKA+ DKH +
Sbjct: 1061 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVSYLLDLPETVKIHPVFHVSQLKKAVGDKHQV 1120

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+ M+NDQME +LEPEN+TQ+RWN+A RDWEYL+Q
Sbjct: 1121 YPDVAMINDQMELMLEPENVTQLRWNEAVRDWEYLVQ 1157

[Close]
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match: A0A5D3BD16 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001350 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.5e-41
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE QLQ+RDEML  LK HL+HAQE+++K +++HRRDV F IG           
Sbjct: 1319 GTTPNDSVEQQLQSRDEMLKVLKRHLQHAQERMQKFANIHRRDVVFDIGDRVYLKLQPYR 1378

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 1379 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 1438

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 1439 YPDVTLINDQMELVLEPENVLQRRWNEAERDWEYLVQ 1475

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: KAA0060331.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22080.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 184.9 bits (468), Expect = 5.4e-43
Identity = 94/157 (59.87%), Postives = 109/157 (69.43%), Query Frame = 0 

Query: 37  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
           GTT NDSVE+QLQ+RDEML ALK HL+HAQE++KK ++VHRRDV F IG           
Sbjct: 119 GTTPNDSVEHQLQSRDEMLAALKRHLQHAQERMKKFANVHRRDVVFDIGDRVFLKLQHYR 178

Query: 97  -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                    VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 179 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAVGDKHQV 238

Query: 157 QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
            PDI M+NDQME V+EPEN+TQ+RWN AERDWEYL+Q
Sbjct: 239 YPDIAMINDQMELVMEPENVTQLRWNKAERDWEYLVQ 275

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: KAA0033702.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 1.0e-41
Identity = 92/157 (58.60%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG           
Sbjct: 933  GTTLNDSVEQQLQSRDEMLKVLKRHLQHAQERMKKFANIHRRDVVFDIGDRVYLKLQPYR 992

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 993  QRSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 1052

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+TM+NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 1053 YPDVTMINDQMELVLEPENVLQRRWNEAERDWEYLVQ 1089

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: TYK22994.1 (putative membrane protein YjcL-like [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-41
Identity = 91/157 (57.96%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
           GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG           
Sbjct: 378 GTTPNDSVEQQLQSRDEMLKVLKRHLQHAQERMKKFANIHRRDVVFDIGDRVYLKLQPYR 437

Query: 97  -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                    VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 438 QRSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 497

Query: 157 QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
            PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 498 YPDVTLINDQMELVLEPENVLQRRWNEAERDWEYLVQ 534

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: KAA0062470.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.7 bits (452), Expect = 3.9e-41
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE+QLQ+R+EML ALK HL+HAQE++KK  DVHRRDV F IG           
Sbjct: 1001 GTTPNDSVEHQLQSRNEMLAALKRHLQHAQERMKKFVDVHRRDVVFDIGDRVYLKLQPYR 1060

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEV+YLLDLPET KIHPVF+VSQLKKA+ DKH +
Sbjct: 1061 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVSYLLDLPETVKIHPVFHVSQLKKAVGDKHQV 1120

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+ M+NDQME +LEPEN+TQ+RWN+A RDWEYL+Q
Sbjct: 1121 YPDVAMINDQMELMLEPENVTQLRWNEAVRDWEYLVQ 1157

[Close]
BLAST of CSPI03G17460 vs. NCBI nr
Match: TYK21209.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 178.3 bits (451), Expect = 5.1e-41
Identity = 90/157 (57.32%), Postives = 107/157 (68.15%), Query Frame = 0 

Query: 37   GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG----------- 96
            GTT NDSVE QLQ+RDEML  LK HL+HAQE+++K +++HRRDV F IG           
Sbjct: 1319 GTTPNDSVEQQLQSRDEMLKVLKRHLQHAQERMQKFANIHRRDVVFDIGDRVYLKLQPYR 1378

Query: 97   -------------------------VGEVAYLLDLPETAKIHPVFYVSQLKKALEDKHTI 156
                                     VGEVAYLLDLPETAKIHPVF+VSQLKKA+ DKH +
Sbjct: 1379 QQSVAKKRCEKLSPRYFGPYTVLGRVGEVAYLLDLPETAKIHPVFHVSQLKKAIGDKHPV 1438

Query: 157  QPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ 158
             PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Sbjct: 1439 YPDVTLINDQMELVLEPENVLQRRWNEAERDWEYLVQ 1475

The following BLAST results are available for this feature:
BLAST of CSPI03G17460 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G17460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFB42.6e-4359.87Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7SR725.0e-4258.60Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3DH988.5e-4257.96Putative membrane protein YjcL-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7V5G01.9e-4157.32Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BD162.5e-4157.32Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of CSPI03G17460 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060331.15.4e-4359.87Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK22080.1 Tran... [more]
KAA0033702.11.0e-4158.60Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK22994.11.7e-4157.96putative membrane protein YjcL-like [Cucumis melo var. makuwa][more]
KAA0062470.13.9e-4157.32Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gyp... [more]
TYK21209.15.1e-4157.32Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of CSPI03G17460 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G17460.1CSPI03G17460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding