CSPI03G16800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G16800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 12617567 .. 12619251 (-)
RNA-Seq Expression	CSPI03G16800
Synteny	CSPI03G16800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTATAAAAAGTAGGTGAGGGAGAGAGGGAGAGAGGGTGAAAGGCGAGTAGGGGAAACACATGATTTTAATGTGTAGTCGCGTTTGAGAATTGGGAAAAAGGAAACGCCAAAGTCGCCAACCCTATAGCTTCTCTTCTTTCTTTGTAAAAGCGCTTCTATAAAAACCAACGTAATTAAAACCCCACCAATCCAGTACATTATATTCATATCTCCCAAACCCATCGGAAAAGTGTTTTTTCTTCTCTTTCTTTCTTTCTTTCTTATTTCTTCTTCTTTCAATTCCTCTCCCTTCAATTTTATGTTCTCATACACACCTAATTATTAAACCCATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGTCAGTTTAATCTTACATTTTTTTAAAAAACTTTGTAATTAAAAAAAATGCTTTATTTATTTATTATTGTTATTGTTATTATTTTGACTAAAAAGGACCGACCAAACAACGTCTATCAAATAAGATAAAGAAAAAAAAAAGTGAGAATAGTGAATATTCCTTAGGAAGATATTTATGTATGATTTAGATATCACAAATTTTTTTCTTAAATAAATAAATAAATCACTTTCCTCTAACTCCAAAAAGATCATTAATATTCTTTGCTTGCATTTTCCTTTTTCTTTTTTTGTTATTTATTATTTTAATTTATTTTGGGTTTGATCCAGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGCTAGTGCAGAAACTATATACTATAAATTTAAACATTACATTTCTTTCTTTCTTTTATCTCTACTAATAATAGAAATGACCTATTTGTTTTTGTCTTTATCTCCTTCTTTTTCCATCGAAATAATTATGCTGCCTTTTTTTTTTTTTTGCGGCTGGTGTGGGTATTTTGGAAATGCCACGTGGATATAGATTATAAAATTAAGAAAAAAGTGATCATATCCGTAATTAAAGCATATAGCTTTGTGCTCCCACATCTAATTGGCTAAACTCTAATTATTATTTTTTTAGTAGTAAAATTGATAATAGAAAAGAGAAGAGAAGAAACTAAAAATATCTGGTTCAATTATTAAACAAAGCTCAGGAATGATGGTTATCTTGTAAAATACACAAAAAGAAGTTATAAAAAATGGTATTAATGAATGAATGAATTATAGAATTGAAATAAAAATGTGGAATGGTTCTGTGTGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAGCAAATATATTATTCTTCTTCTTCTTCTTCTTGGATTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTTAATCTTTATATCTTTTCATTTTAGTTTTTAGATCTTTAATTAATTATTGTCTGAACAAACAAACAAACACAAAGATGGGTCTAATTCAGAAATTAAGTGAATTTCAATTGGC

mRNA sequence

GGTTATAAAAAGTAGGTGAGGGAGAGAGGGAGAGAGGGTGAAAGGCGAGTAGGGGAAACACATGATTTTAATGTGTAGTCGCGTTTGAGAATTGGGAAAAAGGAAACGCCAAAGTCGCCAACCCTATAGCTTCTCTTCTTTCTTTGTAAAAGCGCTTCTATAAAAACCAACGTAATTAAAACCCCACCAATCCAGTACATTATATTCATATCTCCCAAACCCATCGGAAAAGTGTTTTTTCTTCTCTTTCTTTCTTTCTTTCTTATTTCTTCTTCTTTCAATTCCTCTCCCTTCAATTTTATGTTCTCATACACACCTAATTATTAAACCCATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAGCAAATATATTATTCTTCTTCTTCTTCTTCTTGGATTTTTTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTTTAATCTTTATATCTTTTCATTTTAGTTTTTAGATCTTTAATTAATTATTGTCTGAACAAACAAACAAACACAAAGATGGGTCTAATTCAGAAATTAAGTGAATTTCAATTGGC

Coding sequence (CDS)

ATGGAATCGCATGTGCAATTCACCCAAACCGGGCCGCTTTGGACTAATGAGAAGCACATGCACTTCTTGAATTCCGTGGAAGCTTCTTTCGTCCGATCAATGTTCCAAAATCGCGCACATCGCCGCCGTCTACGGCTGGACCGCCTCTTGCCGGACACCGCTGACTCAACCCTAGATTCCCCTCATAACCACACCAAAAACCATCCCACCTCCGGAAGTGCAAGAATCAACGGTAGATCTACGAGGAGATCTAGGAGGATATCATCTCCACCGTACACTTCAACTCAAGATCAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAGGATGAAGATGAGAGAGACCATCCCATGTCACCTCTCAACTAG

Protein sequence

MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDSPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSPLN*

Homology

[Close]

BLAST of CSPI03G16800 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 4.9e-61
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of CSPI03G16800 vs. ExPASy TrEMBL
Match: A0A1S3AYV4 (uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.3e-57
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQVVPQMEK AVEDEDERDHPMSP
Sbjct: 61  PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQVVPQMEKIAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of CSPI03G16800 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 97/123 (78.86%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRRLRLDRLLPDTADSTLD 60
           MESHVQF +TG  WTNEKHMHFLNS+EASFVRSMF+NR H RRRLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMS 120
           SP    KNH TSG+A I+GRS+ RSR  SS P+TS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PLN 123
           P+N
Sbjct: 147 PIN 149

[Close]

BLAST of CSPI03G16800 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.0e-43
Identity = 93/122 (76.23%), Postives = 105/122 (86.07%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           P  + K H  S   R++GRS+RRSRRI S P+TS QDQVVPQME+RAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISVGTRMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 LN 123
           +N
Sbjct: 121 VN 122

[Close]

BLAST of CSPI03G16800 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.5e-43
Identity = 94/122 (77.05%), Postives = 107/122 (87.70%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRRRLRLDR L DTADSTLDS
Sbjct: 1   MESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           P  + K H  SG+ R++GRS+RRSRRI S P+TS QDQVVPQME+RAVEDEDERDHP+SP
Sbjct: 61  PQKNRKKHSISGT-RMDGRSSRRSRRIPSLPHTSIQDQVVPQMEERAVEDEDERDHPLSP 120

Query: 121 LN 123
           +N
Sbjct: 121 VN 121

[Close]

BLAST of CSPI03G16800 vs. NCBI nr
Match: XP_004140781.1 (uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical protein Csa_009764 [Cucumis sativus])

HSP 1 Score: 243.4 bits (620), Expect = 1.0e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRR LRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP
Sbjct: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of CSPI03G16800 vs. NCBI nr
Match: XP_008439192.1 (PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 6.7e-57
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60
           MESHVQFTQTGP WTNEKHMHFLNS+EASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS
Sbjct: 1   MESHVQFTQTGPSWTNEKHMHFLNSMEASFVRSMFQNRAHRRRLRLDRLLPDTADSTLDS 60

Query: 61  PHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMSP 120
           P NHTKNHPTSGSAR+NGRSTRRSRR SSPPY+STQDQVVPQMEK AVEDEDERDHPMSP
Sbjct: 61  PLNHTKNHPTSGSARMNGRSTRRSRRTSSPPYSSTQDQVVPQMEKIAVEDEDERDHPMSP 120

Query: 121 LN 123
           LN
Sbjct: 121 LN 122

[Close]

BLAST of CSPI03G16800 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-46
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNR-AHRRRLRLDRLLPDTADSTLD 60
           MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR  HRRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPM 120
           SP  + TKNH TS + RINGRS+RRSRRISS P+TSTQDQVVPQ+EKRAVEDEDERDHPM
Sbjct: 61  SPQKDDTKNHATSEAVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPLN 123
           SP+N
Sbjct: 121 SPVN 124

[Close]

BLAST of CSPI03G16800 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 102/124 (82.26%), Postives = 113/124 (91.13%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNR-AHRRRLRLDRLLPDTADSTLD 60
           MESHVQF++TGP WTNEKHMHFLNS+EASFV+SMF+NR  HRRRLRLDR LPDTADSTLD
Sbjct: 1   MESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLD 60

Query: 61  SPH-NHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPM 120
           SP  + TKNH TS + RINGRS+RRSRRISS P+TSTQDQVVPQ+EKRAVEDEDERDHPM
Sbjct: 61  SPQKDDTKNHATS-AVRINGRSSRRSRRISSLPHTSTQDQVVPQIEKRAVEDEDERDHPM 120

Query: 121 SPLN 123
           SP+N
Sbjct: 121 SPVN 123

[Close]

BLAST of CSPI03G16800 vs. NCBI nr
Match: XP_022141184.1 (uncharacterized protein LOC111011640 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 2.9e-44
Identity = 97/123 (78.86%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAH-RRRLRLDRLLPDTADSTLD 60
           MESHVQF +TG  WTNEKHMHFLNS+EASFVRSMF+NR H RRRLRLDR LPDT+DSTLD
Sbjct: 27  MESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLD 86

Query: 61  SPHNHTKNHPTSGSARINGRSTRRSRRISSPPYTSTQDQVVPQMEKRAVEDEDERDHPMS 120
           SP    KNH TSG+A I+GRS+ RSR  SS P+TS QDQVVPQMEKRAVEDEDERDHPMS
Sbjct: 87  SPQKDRKNHATSGAATIDGRSSSRSRTRSSLPHTSNQDQVVPQMEKRAVEDEDERDHPMS 146

Query: 121 PLN 123
           P+N
Sbjct: 147 PIN 149

The following BLAST results are available for this feature:

BLAST of CSPI03G16800 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G16800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5V0	4.9e-61	99.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]
A0A1S3AYV4	3.3e-57	94.26	uncharacterized protein LOC103484063 OS=Cucumis melo OX=3656 GN=LOC103484063 PE=...	[more]
A0A6J1CHV7	1.4e-44	78.86	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JBA6	2.0e-43	76.23	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J606	3.5e-43	77.05	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI03G16800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140781.1	1.0e-60	99.18	uncharacterized protein LOC101217506 [Cucumis sativus] >KGN57360.1 hypothetical ...	[more]
XP_008439192.1	6.7e-57	94.26	PREDICTED: uncharacterized protein LOC103484063 [Cucumis melo]	[more]
XP_038882732.1	1.4e-46	82.26	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_038882735.1	2.0e-45	82.26	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_022141184.1	2.9e-44	78.86	uncharacterized protein LOC111011640 [Momordica charantia]	[more]

BLAST of CSPI03G16800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..122
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 1..116
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 1..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G16800.1	CSPI03G16800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold