CSPI03G16070 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G16070
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	Chr3: 12041566 .. 12044135 (+)
RNA-Seq Expression	CSPI03G16070
Synteny	CSPI03G16070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACATAAGAAGAAGTTAGATAGAGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAACTTAGGAAGTGAAGTTTGAAGGGAACAATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTATCATTTCTGTTTCTAATTTTTGTTCATTGCAATCTGAATTTTGGAATTTTGCTTTGTGAAAAATCAGGTTCTTGTTGTTGTTGTTCTGAGACTTGTAGTAGTCAAACTCCAATTCGTATAGGATTTATTCCTTAAGACGTGGAAGTAGAAATTTTGAAACCATAGTCTGAACGTTAGGCGAACTGTCAAGGGATTACTGTTTTGGCAAGATTGTGGCTTGAAATTAGGTTATATGTTGAAAAACCTGAAAATGAGTTATGAAATGAAGAGTATTATACTCTAGGCCCCCTTCATTTCGTGTTGTGAATAGCATTGGTAGTTCTTCGATCACCAATCTTACTTTCTTACTTTTGAAGTGCGTATTTGGATTGTAAAATTAGGGCCACAGTCCATTACCATTTATGAACAAGCTAATGGTATGGAAGAGTTGTCCAAAGCTAAGGATTTGAGTCGAGCGTTGAAGTATAGTGTTCTCATTGTTGCTTTCTTTTGGTAGGAAGATTTGTCTTCAGTGTTGCCTCTCCAGTTATTTTATTTTCTTTAGTGTGAAGGAAAGGTAACCTTTTGATAGTGGATTAGATTCCCCGTGTCCTCCTCTACCAAATATATTGCATAAATATCTTACAATGCTTATTCATATATTAAGCTAGAGTAACATAACCTTCCTTTTAGTTTAGGATTTTCCAATCACAATAAGATGCTTATGATTTTTCTGGCCTTGTGATGATTAATTCGTCTGGGAGACCATCAACTGACTGGTCCTATGTTTTGAATCGTGTTTGATTTGTTGTGTTACTTCATAAATGAATTTGACTAAATTACGGCGGTGATAATTTATCTTTAGTATCTGCTGGTGGTCCATTGAAATGGGAATCCACTTAACTGAACTTAACTCAACTCTTTTGGAATGTTCACCTTTTCAGATTATAGACAGTTTTTCAGTTAGATTGTCGTCCTTTCCAAATTGTTACTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTTGACTTCCATTTGGTATCCATAAGGCTAATGTAGATGGATAAGATCGGGCATTGTTTTTTACTCTCAAGTTAAATCCATGGTTTTCATGAAACCTATATTTTGAAGCTTGCTTGATTAAGACTCAAGAGTTGAATGTCTAGAGTTCAATGGTTTGATACTACATGCTTATACCTGCAATTGAAAACTTACAAGCATGTACTTCATTTTTTGTTAATTCTACCATCAAACTAATTGAAAGTGATAGCTATTGTCACGTTGACATATGTAGTGAACTTCCACTGAGTTGTTTGATGGCATGCTAAATATTTCCATGCTTTCATTTGTCTAGTACGAATATGCATTTGATTTGACTGAGTTTTGAGCTATTTTCAGTGTAAATTTTTTTATGTACAATTCCTTTCCTTCGATGAATATGGTGTGCATAGTTCATGTTTTCCTTTCACTTCCATCCACCACCAGAACTAATTTGTTGATGTGCACCTGCAGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTAATCCTTTTTGCTCGATGCTTTGTATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATTTTTTGAGCTCGAAAGCAAATGAGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGATAGATTACTTCTGTAATTATCTTAAGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGC

mRNA sequence

GGACATAAGAAGAAGTTAGATAGAGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAACTTAGGAAGTGAAGTTTGAAGGGAACAATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTAATCCTTTTTGCTCGATGCTTTGTATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATTTTTTGAGCTCGAAAGCAAATGAGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGATAGATTACTTCTGTAATTATCTTAAGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGC

Coding sequence (CDS)

ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAA

Protein sequence

MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS*

Homology

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BLAST of CSPI03G16070 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.1e-43
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATS 60
           MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIESD----TTEDPSRSKNS 60

Query: 61  SPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
           S  G G  SP S+S+     S +T  + K KGKR+   + RR+PVEKPVF+ +     A+
Sbjct: 61  SSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 193
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

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BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match: A0A0A0L8E3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
           MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
           PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120

Query: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
           SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL
Sbjct: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180

Query: 181 KYLQNEKIKDEKS 194
           KYLQNEKIKDEKS
Sbjct: 181 KYLQNEKIKDEKS 193

[Close]

BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match: A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
              TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 194
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 183/199 (91.96%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
              TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 194
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVLKYLQNEKIKDEKS 194
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 8.7e-81
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
           MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60

Query: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVLKYLQNEKIKDEKS 194
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CSPI03G16070 vs. NCBI nr
Match: XP_004148133.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_010547 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 5.9e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
           MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS
Sbjct: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60

Query: 61  PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
           PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE
Sbjct: 61  PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120

Query: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
           SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL
Sbjct: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180

Query: 181 KYLQNEKIKDEKS 194
           KYLQNEKIKDEKS
Sbjct: 181 KYLQNEKIKDEKS 193

[Close]

BLAST of CSPI03G16070 vs. NCBI nr
Match: XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
              TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 194
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CSPI03G16070 vs. NCBI nr
Match: KAA0067684.1 (protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa])

HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93
Identity = 183/199 (91.96%), Postives = 190/199 (95.48%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
           MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA   
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
              TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 194
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CSPI03G16070 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 174/199 (87.44%), Postives = 186/199 (93.47%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIAT-- 60
           MALQILHHSPSSFT++PYHLPNPSL+F SKPKFII SQNPSES+KPISK VDDAP+AT  
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60

Query: 61  ----SSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
               SSPQGFGSSS QST+TSKS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61  KPSSSSPQGFGSSSSQSTTTSKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGKVDEEAAK 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEKS 194
           VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of CSPI03G16070 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
           MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60

Query: 61  PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
            QGFGS S QST++SKS+PK+     KQKGKRQRASIIRRSPVEKPVFVG+VDE+  KEQ
Sbjct: 61  AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120

Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
           G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180

Query: 181 YGVLKYLQNEKIKDEKS 194
           YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197

[Close]

BLAST of CSPI03G16070 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-44
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0


Query: 1   MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATS 60
           MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    S
Sbjct: 1   MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIESD----TTEDPSRSKNS 60

Query: 61  SPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
           S  G G  SP S+S+     S +T  + K KGKR+   + RR+PVEKPVF+ +     A+
Sbjct: 61  SSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAE 120

Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
           EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180

Query: 181 VAYGVLKYLQNEKIKDEK 193
            AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of CSPI03G16070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	4.1e-43	54.55	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of CSPI03G16070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8E3	2.9e-100	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1	[more]
A0A1S3AXX6	1.4e-94	92.46	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VJY0	1.2e-93	91.96	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1FNA7	1.0e-81	81.73	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IBT8	8.7e-81	80.71	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CSPI03G16070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148133.1	5.9e-100	100.00	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hyp...	[more]
XP_008439106.1	2.9e-94	92.46	PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]	[more]
KAA0067684.1	2.4e-93	91.96	protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein L...	[more]
XP_038899637.1	1.8e-88	87.44	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]
XP_023554492.1	1.2e-81	81.73	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI03G16070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	2.9e-44	54.55	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G16070.1	CSPI03G16070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane