Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACATAAGAAGAAGTTAGATAGAGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAACTTAGGAAGTGAAGTTTGAAGGGAACAATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTATCATTTCTGTTTCTAATTTTTGTTCATTGCAATCTGAATTTTGGAATTTTGCTTTGTGAAAAATCAGGTTCTTGTTGTTGTTGTTCTGAGACTTGTAGTAGTCAAACTCCAATTCGTATAGGATTTATTCCTTAAGACGTGGAAGTAGAAATTTTGAAACCATAGTCTGAACGTTAGGCGAACTGTCAAGGGATTACTGTTTTGGCAAGATTGTGGCTTGAAATTAGGTTATATGTTGAAAAACCTGAAAATGAGTTATGAAATGAAGAGTATTATACTCTAGGCCCCCTTCATTTCGTGTTGTGAATAGCATTGGTAGTTCTTCGATCACCAATCTTACTTTCTTACTTTTGAAGTGCGTATTTGGATTGTAAAATTAGGGCCACAGTCCATTACCATTTATGAACAAGCTAATGGTATGGAAGAGTTGTCCAAAGCTAAGGATTTGAGTCGAGCGTTGAAGTATAGTGTTCTCATTGTTGCTTTCTTTTGGTAGGAAGATTTGTCTTCAGTGTTGCCTCTCCAGTTATTTTATTTTCTTTAGTGTGAAGGAAAGGTAACCTTTTGATAGTGGATTAGATTCCCCGTGTCCTCCTCTACCAAATATATTGCATAAATATCTTACAATGCTTATTCATATATTAAGCTAGAGTAACATAACCTTCCTTTTAGTTTAGGATTTTCCAATCACAATAAGATGCTTATGATTTTTCTGGCCTTGTGATGATTAATTCGTCTGGGAGACCATCAACTGACTGGTCCTATGTTTTGAATCGTGTTTGATTTGTTGTGTTACTTCATAAATGAATTTGACTAAATTACGGCGGTGATAATTTATCTTTAGTATCTGCTGGTGGTCCATTGAAATGGGAATCCACTTAACTGAACTTAACTCAACTCTTTTGGAATGTTCACCTTTTCAGATTATAGACAGTTTTTCAGTTAGATTGTCGTCCTTTCCAAATTGTTACTCTAGTTAATGGTTCTGCAAATTATCATCCCAGCCTTGACTTCCATTTGGTATCCATAAGGCTAATGTAGATGGATAAGATCGGGCATTGTTTTTTACTCTCAAGTTAAATCCATGGTTTTCATGAAACCTATATTTTGAAGCTTGCTTGATTAAGACTCAAGAGTTGAATGTCTAGAGTTCAATGGTTTGATACTACATGCTTATACCTGCAATTGAAAACTTACAAGCATGTACTTCATTTTTTGTTAATTCTACCATCAAACTAATTGAAAGTGATAGCTATTGTCACGTTGACATATGTAGTGAACTTCCACTGAGTTGTTTGATGGCATGCTAAATATTTCCATGCTTTCATTTGTCTAGTACGAATATGCATTTGATTTGACTGAGTTTTGAGCTATTTTCAGTGTAAATTTTTTTATGTACAATTCCTTTCCTTCGATGAATATGGTGTGCATAGTTCATGTTTTCCTTTCACTTCCATCCACCACCAGAACTAATTTGTTGATGTGCACCTGCAGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTAATCCTTTTTGCTCGATGCTTTGTATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATTTTTTGAGCTCGAAAGCAAATGAGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGATAGATTACTTCTGTAATTATCTTAAGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGC
mRNA sequence
GGACATAAGAAGAAGTTAGATAGAGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAACTTAGGAAGTGAAGTTTGAAGGGAACAATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTAATCCTTTTTGCTCGATGCTTTGTATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAATTTTTTGAGCTCGAAAGCAAATGAGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGATAGATTACTTCTGTAATTATCTTAAGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGC
Coding sequence (CDS)
ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAA
Protein sequence
MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS*
Homology
BLAST of CSPI03G16070 vs. ExPASy Swiss-Prot
Match:
F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 4.1e-43
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATS 60
MALQI HSP SF+ RPYHL + P+F IK QN ESD D + S
Sbjct: 1 MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIESD----TTEDPSRSKNS 60
Query: 61 SPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
S G G SP S+S+ S +T + K KGKR+ + RR+PVEKPVF+ + A+
Sbjct: 61 SSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAE 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEK 193
AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185
BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match:
A0A0A0L8E3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1)
HSP 1 Score: 374.4 bits (960), Expect = 2.9e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS
Sbjct: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
Query: 61 PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE
Sbjct: 61 PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
Query: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL
Sbjct: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
Query: 181 KYLQNEKIKDEKS 194
KYLQNEKIKDEKS
Sbjct: 181 KYLQNEKIKDEKS 193
BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match:
A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)
HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61 KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEKS 194
VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199
BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match:
A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)
HSP 1 Score: 352.4 bits (903), Expect = 1.2e-93
Identity = 183/199 (91.96%), Postives = 190/199 (95.48%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61 KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEKS 194
VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199
BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match:
A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)
HSP 1 Score: 312.8 bits (800), Expect = 1.0e-81
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
MALQI+HHSPSSFT++PYHLP LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
Query: 61 PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
QGFGS S QST++SKS+PK+ KQKGKRQRASIIRRSPVEKPVFVG+VDE+ KEQ
Sbjct: 61 AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
Query: 181 YGVLKYLQNEKIKDEKS 194
YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197
BLAST of CSPI03G16070 vs. ExPASy TrEMBL
Match:
A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)
HSP 1 Score: 309.7 bits (792), Expect = 8.7e-81
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
MALQI+HHSPSSFT++PYHLP L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGTSS 60
Query: 61 PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
QGFGS S QST++SKS+PK+ KQKGKRQRASIIRRSPVEKPVFVG+VDE+ KEQ
Sbjct: 61 AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
G+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLFVAGTVA 180
Query: 181 YGVLKYLQNEKIKDEKS 194
YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197
BLAST of CSPI03G16070 vs. NCBI nr
Match:
XP_004148133.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hypothetical protein Csa_010547 [Cucumis sativus])
HSP 1 Score: 374.4 bits (960), Expect = 5.9e-100
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS
Sbjct: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
Query: 61 PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE
Sbjct: 61 PQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQGRNE 120
Query: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL
Sbjct: 121 SYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVL 180
Query: 181 KYLQNEKIKDEKS 194
KYLQNEKIKDEKS
Sbjct: 181 KYLQNEKIKDEKS 193
BLAST of CSPI03G16070 vs. NCBI nr
Match:
XP_008439106.1 (PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo])
HSP 1 Score: 355.5 bits (911), Expect = 2.9e-94
Identity = 184/199 (92.46%), Postives = 191/199 (95.98%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61 KPSTSSPQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEKS 194
VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199
BLAST of CSPI03G16070 vs. NCBI nr
Match:
KAA0067684.1 (protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa])
HSP 1 Score: 352.4 bits (903), Expect = 2.4e-93
Identity = 183/199 (91.96%), Postives = 190/199 (95.48%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA--- 60
MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA
Sbjct: 1 MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60
Query: 61 ---TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASIIRRSPVEKPVFVG+VDEQVAK
Sbjct: 61 KPYTSSSQGFGSSSPQSTSTSKSTPKSVKQKGKRQRASIIRRSPVEKPVFVGEVDEQVAK 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEKS 194
VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199
BLAST of CSPI03G16070 vs. NCBI nr
Match:
XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])
HSP 1 Score: 336.3 bits (861), Expect = 1.8e-88
Identity = 174/199 (87.44%), Postives = 186/199 (93.47%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIAT-- 60
MALQILHHSPSSFT++PYHLPNPSL+F SKPKFII SQNPSES+KPISK VDDAP+AT
Sbjct: 1 MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60
Query: 61 ----SSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
SSPQGFGSSS QST+TSKS+PK++KQKGKRQRASIIRRSPVEKPVFVG+VDE+ AK
Sbjct: 61 KPSSSSPQGFGSSSSQSTTTSKSSPKAVKQKGKRQRASIIRRSPVEKPVFVGKVDEEAAK 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT
Sbjct: 121 EQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEKS 194
VAYGVLKYLQNEKIKDEKS
Sbjct: 181 VAYGVLKYLQNEKIKDEKS 199
BLAST of CSPI03G16070 vs. NCBI nr
Match:
XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])
HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 161/197 (81.73%), Postives = 177/197 (89.85%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSS 60
MALQI+HHSPSSFT++PYHLP LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS
Sbjct: 1 MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGTSS 60
Query: 61 PQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRRSPVEKPVFVGQVDEQVAKEQ 120
QGFGS S QST++SKS+PK+ KQKGKRQRASIIRRSPVEKPVFVG+VDE+ KEQ
Sbjct: 61 AQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDEEAIKEQ 120
Query: 121 GRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVA 180
G+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVA
Sbjct: 121 GKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLFVAGTVA 180
Query: 181 YGVLKYLQNEKIKDEKS 194
YGV KYLQNEK+K +KS
Sbjct: 181 YGVSKYLQNEKLKGDKS 197
BLAST of CSPI03G16070 vs. TAIR 10
Match:
AT5G51545.1 (low psii accumulation2 )
HSP 1 Score: 176.0 bits (445), Expect = 2.9e-44
Identity = 108/198 (54.55%), Postives = 134/198 (67.68%), Query Frame = 0
Query: 1 MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATS 60
MALQI HSP SF+ RPYHL + P+F IK QN ESD D + S
Sbjct: 1 MALQI--HSPCSFSTRPYHL----FFTTRNPRFAIKCQNSQIESD----TTEDPSRSKNS 60
Query: 61 SPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDEQVAK 120
S G G SP S+S+ S +T + K KGKR+ + RR+PVEKPVF+ + A+
Sbjct: 61 SSSGVGFGSPASSSSPAKKLSAATSGNKKGKGKRE---VNRRAPVEKPVFMSEEGAAKAE 120
Query: 121 EQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGT 180
EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT
Sbjct: 121 EQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLFVAGT 180
Query: 181 VAYGVLKYLQNEKIKDEK 193
AYGVLKY+QNEK+K ++
Sbjct: 181 TAYGVLKYIQNEKMKGQE 185
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| F4KDA6 | 4.1e-43 | 54.55 | Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L8E3 | 2.9e-100 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G176310 PE=4 SV=1 | [more] |
| A0A1S3AXX6 | 1.4e-94 | 92.46 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103... | [more] |
| A0A5A7VJY0 | 1.2e-93 | 91.96 | Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
| A0A6J1FNA7 | 1.0e-81 | 81.73 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=... | [more] |
| A0A6J1IBT8 | 8.7e-81 | 80.71 | protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004148133.1 | 5.9e-100 | 100.00 | protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus] >KGN57284.1 hyp... | [more] |
| XP_008439106.1 | 2.9e-94 | 92.46 | PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo] | [more] |
| KAA0067684.1 | 2.4e-93 | 91.96 | protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa] >TYK23688.1 protein L... | [more] |
| XP_038899637.1 | 1.8e-88 | 87.44 | protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida] | [more] |
| XP_023554492.1 | 1.2e-81 | 81.73 | protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT5G51545.1 | 2.9e-44 | 54.55 | low psii accumulation2 | [more] |
