CSPI03G15260 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G15260
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionComplex1_LYR domain-containing protein
LocationChr3: 11416853 .. 11419042 (+)
RNA-Seq ExpressionCSPI03G15260
SyntenyCSPI03G15260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACCTCAGTCTTCTCTATCGACCAACTCTTCAAATTCGGGAGCTTCGTTGATTCTTGTTCGATTTTCTTCATCCTCTCCCTCTTTTTCCATACTCAAGCTCGTAAGAGGCCACCAAGAGGAGCCGCGGGAGAAGGTAATAGATCTTCTATCTTGAATCCTTTTCATATTTAGTCAAATTTTTGCTTTATTTGTTCAATTTCATAAAAAGTTAAGAGTGTCATTTGTATTATGATCAATGTTTAGCACTCATAATGATTTACGACATTAACTAGCCTCTATTCTGCTTCTTCGTGGACGAACTTCCCACGAGAAGGAGAACGATGAACCTGTGGGAACAGAAGGCAGAGATTAATGAGAATAATTAGAATAGACCCGTTATGGCTGTATCAAATGGAATGATTGTATGTGAGAGTTTTTTGTTTAAAATTGGAGATGATTTCTCAGTTGATCTAGCTTGAATTTAGTAGTAACTTTCAATTATGTTTCAGCCATAAAAACTGTTTTCTTCCGCTTGATCCTTGTCTTTTTAATTCTTCGGTAGTTTTTCGTTGTGGCGAACTAATCATTTTAAAGAATACAGTAGGTGTGTTAGTGAAAAGGGTGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGGTTGGTCCCCCTCCTATCCTTTTTTGTAATACAATTTTCTCCCCAAATTTTCTTAACTTTACATGTTTTATTATTGCAGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGGTATGGACGTGCCCTTTGTTTTTTATTTTATCTAATCCAATGGCCCCATTCTAGTAATCTTGCATTTGAATAATTTAAAAAGGTTACTGATCCAATGAGAAGTGAAAAGTTAAAGTTTAATGCTCCGGGTTAATTGCAATTATCCAATCAATGAGTTCATTCGTTTATTTCTTTATTTGCCATTTGGGTATTGTACTGCATCAAGCCTATAGTTGAATTCATGCAGGACATAACCTTACTGTACAGCTATGATCTTATTATTCATATAAATCAGCCAAAATATTACTATAGGAATTGAACAATCGACCGTAACATAGAATTTTGTATGAAAAACTGAACTGCCTTTTGCTATCTGCCTCCCATGATCATGTTTTATATCCAATGGAAAAGTACTTCCAGTGGCTAGGTTGTTGCGATTGATGTAGAAAAGGATTCTTCAAATCGATGTAAGGTCATTAATGCTAATAATTTTCTGTATAAAGTTCACAATATTAGGTGCAAAATGGAAATTCCTATTCATTTCACCCGCACTTCAAAGTTAGAAATGATTTGAAGATTAATTGACGCACTTCATCTTGTTGACTGTGATATTAGGCTTCCTCTTCTTTTTTGCTGAATTAGGTTATAGTTCTCATCTGTTTTGACTTAAAATTTTGTGCTCACATTTCAAATTAGTTGTACCCAGTTACAGGAAGGTGTAGAGGATTCGACATTGGTTCTTTGACACTTGTTAAACTTGAATCCTATCAACTTCTTGCAGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGAGTATGTCTTATGATTGCTTTTTTTCCCTTGTTTCGTTCTCCGATCAAACCCTAAGTGAAGAGATCACAATTATATTTTCTGATTAGAACTTGTGTGGGTATACCACTCACATTTCTGTGTATTTATTGTTTGTCTGCAGTGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGATGTTATATCGAAAATGACGTTGAGTTAAAGTTCACCATTGTAGCTTCAGACATTGTAGCAATAAGATGACTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTCAAAGAGATTGTCCATTCTACAGTAGTTGATTTCTACGATTTTTTCGTAGAAATCGTTCATTCTACGGTAGTTGGTGAATGTTTTTTGATCTACAATCTACATTTTGTTTGCCTAAAGTGGATGTTTAAGGAAGATATGACATATTGCTCAACTCTGATGTCGGGTTCTCTTTTTT

mRNA sequence

AACCTCAGTCTTCTCTATCGACCAACTCTTCAAATTCGGGAGCTTCGTTGATTCTTGTTCGATTTTCTTCATCCTCTCCCTCTTTTTCCATACTCAAGCTCGTAAGAGGCCACCAAGAGGAGCCGCGGGAGAAGTAGGTGTGTTAGTGAAAAGGGTGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGATGTTATATCGAAAATGACGTTGAGTTAAAGTTCACCATTGTAGCTTCAGACATTGTAGCAATAAGATGACTAATGATGAAAGTACTCCTCGGAGGTTGTTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTCAAAGAGATTGTCCATTCTACAGTAGTTGATTTCTACGATTTTTTCGTAGAAATCGTTCATTCTACGGTAGTTGGTGAATGTTTTTTGATCTACAATCTACATTTTGTTTGCCTAAAGTGGATGTTTAAGGAAGATATGACATATTGCTCAACTCTGATGTCGGGTTCTCTTTTTT

Coding sequence (CDS)

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCTAATAATGTCATTAGGCTCTACCGCGAGTGCCTTCGAAGGGCCAAGTTTCTTGGTCATCGGCAACATAACACCGAGCTTATTGTCGATATGGTGAGGCAACAATTCAAAAAGAACATGCATGAGACTGACCCAGAGAAGATTCAGAAGATGAAAGATGATGCTGCTAGGGGACTTATAAACCATATGCTATACGAACATGAGAGAATGTCAGGTAAAAAATTCAGCCAAAGTTCTTGA

Protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQKMKDDAARGLINHMLYEHERMSGKKFSQSS*
Homology
BLAST of CSPI03G15260 vs. ExPASy TrEMBL
Match: A0A1S3AYB1 (uncharacterized protein LOC103483919 OS=Cucumis melo OX=3656 GN=LOC103483919 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

BLAST of CSPI03G15260 vs. ExPASy TrEMBL
Match: A0A5A7UD86 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00350 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

BLAST of CSPI03G15260 vs. ExPASy TrEMBL
Match: A0A0A0L5F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171030 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 2   PSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 61
           P  +TALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ
Sbjct: 84  PREKTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKIQ 143

Query: 62  KMKDDAARGLINHMLYEHERMSGKKFSQSS 92
           KMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 144 KMKDDAARGLINHMLYEHERMSGKKFSQSS 173

BLAST of CSPI03G15260 vs. ExPASy TrEMBL
Match: A0A1U8AWB6 (uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104607091 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.3e-39
Identity = 81/91 (89.01%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

BLAST of CSPI03G15260 vs. ExPASy TrEMBL
Match: A0A7N2R6B7 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.0e-39
Identity = 81/91 (89.01%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTELIVDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELIVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKSA 91

BLAST of CSPI03G15260 vs. NCBI nr
Match: XP_004147626.1 (uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093.1 uncharacterized protein LOC101203751 [Cucumis sativus] >KAE8650410.1 hypothetical protein Csa_010313 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKDDAARGLINHMLYEHERMSGKKFSQSS
Sbjct: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 91

BLAST of CSPI03G15260 vs. NCBI nr
Match: XP_008438986.1 (PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo] >XP_008438987.1 PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo] >KAA0052166.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK05131.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAKF+GHRQHNTELIVDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKFVGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QKMKD+AARGLINHMLYEHERMSG+K SQSS
Sbjct: 61 QKMKDEAARGLINHMLYEHERMSGQKLSQSS 91

BLAST of CSPI03G15260 vs. NCBI nr
Match: XP_010270901.1 (PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera] >DAD38383.1 TPA_asm: hypothetical protein HUJ06_009024 [Nelumbo nucifera])

HSP 1 Score: 171.0 bits (432), Expect = 4.7e-39
Identity = 81/91 (89.01%), Postives = 89/91 (97.80%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRA+F+GHRQHNTEL+VDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRARFIGHRQHNTELVVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS SS
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSSSS 91

BLAST of CSPI03G15260 vs. NCBI nr
Match: XP_031490696.1 (uncharacterized protein LOC116257839 isoform X2 [Nymphaea colorata])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPP+LANNVIRLYRECLRRAKF+GHRQHN EL+VDMVRQQFKKNMHETDPEKI
Sbjct: 1  MPSLQTALPPDLANNVIRLYRECLRRAKFVGHRQHNVELVVDMVRQQFKKNMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQS 91
          QKMKDDAARGLINHML+E ER+SG+KFS+S
Sbjct: 61 QKMKDDAARGLINHMLFESERLSGRKFSKS 90

BLAST of CSPI03G15260 vs. NCBI nr
Match: XP_030973563.1 (uncharacterized protein LOC115993736 [Quercus lobata] >XP_030973564.1 uncharacterized protein LOC115993736 [Quercus lobata] >XP_030973565.1 uncharacterized protein LOC115993736 [Quercus lobata])

HSP 1 Score: 170.6 bits (431), Expect = 6.2e-39
Identity = 81/91 (89.01%), Postives = 90/91 (98.90%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQTALPPELANNVIRLYRECLRRAK++GHRQHNTELIVDMVRQQFKK+MHETDPEKI
Sbjct: 1  MPSLQTALPPELANNVIRLYRECLRRAKYIGHRQHNTELIVDMVRQQFKKHMHETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINH+LYE E+MSG+KFS+S+
Sbjct: 61 QKLKDDAARGLINHILYESEKMSGRKFSKSA 91

BLAST of CSPI03G15260 vs. TAIR 10
Match: AT3G17300.1 (unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). )

HSP 1 Score: 151.4 bits (381), Expect = 3.6e-37
Identity = 72/91 (79.12%), Postives = 84/91 (92.31%), Query Frame = 0

Query: 1  MPSLQTALPPELANNVIRLYRECLRRAKFLGHRQHNTELIVDMVRQQFKKNMHETDPEKI 60
          MPSLQT+LPPELANNV+RLYRECLRRAKF+G +QHNTEL+V MVRQQFKK+M+ETDPEKI
Sbjct: 1  MPSLQTSLPPELANNVVRLYRECLRRAKFIGKQQHNTELVVGMVRQQFKKHMNETDPEKI 60

Query: 61 QKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QK+KDDAARGLINHML+E  +++G K SQ S
Sbjct: 61 QKLKDDAARGLINHMLFESAKLTGGKVSQRS 91

BLAST of CSPI03G15260 vs. TAIR 10
Match: AT3G17300.2 (unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35 Blast hits to 35 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 2.0e-19
Identity = 44/58 (75.86%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 34 QHNTELIVDMVRQQFKKNMHETDPEKIQKMKDDAARGLINHMLYEHERMSGKKFSQSS 92
          QHNTEL+V MVRQQFKK+M+ETDPEKIQK+KDDAARGLINHML+E  +++G K SQ S
Sbjct: 17 QHNTELVVGMVRQQFKKHMNETDPEKIQKLKDDAARGLINHMLFESAKLTGGKVSQRS 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AYB18.4e-4295.60uncharacterized protein LOC103483919 OS=Cucumis melo OX=3656 GN=LOC103483919 PE=... [more]
A0A5A7UD868.4e-4295.60Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0L5F62.4e-4196.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171030 PE=4 SV=1[more]
A0A1U8AWB62.3e-3989.01uncharacterized protein LOC104607091 isoform X2 OS=Nelumbo nucifera OX=4432 GN=L... [more]
A0A7N2R6B73.0e-3989.01Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_004147626.11.9e-43100.00uncharacterized protein LOC101203751 [Cucumis sativus] >XP_011651093.1 uncharact... [more]
XP_008438986.11.7e-4195.60PREDICTED: uncharacterized protein LOC103483919 [Cucumis melo] >XP_008438987.1 P... [more]
XP_010270901.14.7e-3989.01PREDICTED: uncharacterized protein LOC104607091 isoform X2 [Nelumbo nucifera] >D... [more]
XP_031490696.16.2e-3990.00uncharacterized protein LOC116257839 isoform X2 [Nymphaea colorata][more]
XP_030973563.16.2e-3989.01uncharacterized protein LOC115993736 [Quercus lobata] >XP_030973564.1 uncharacte... [more]
Match NameE-valueIdentityDescription
AT3G17300.13.6e-3779.12unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bac... [more]
AT3G17300.22.0e-1975.86unknown protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 16..67
e-value: 4.3E-11
score: 42.7
NoneNo IPR availablePANTHERPTHR47579COMPLEX 1 LYR PROTEINcoord: 1..91
NoneNo IPR availableCDDcd20251Complex1_LYR_SFcoord: 16..73
e-value: 6.61957E-18
score: 68.3405

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G15260.1CSPI03G15260.1mRNA
CSPI03G15260.2CSPI03G15260.2mRNA