CSPI03G14830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G14830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 11024866 .. 11027415 (+)
RNA-Seq Expression	CSPI03G14830
Synteny	CSPI03G14830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAATATTTTGTTGATAACATATATATAATATAAAGTTTGTTAATTAATCTTATAGTTTGTGTGTATAGCATTT

mRNA sequence

GATTCTTCATCCTTCTTCCTACCAACCAACTCCCAGCAAAATTAACAACACCGCACCAAATAATTATAATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAATATTTTGTTGATAACATATATATAATATAAAGTTTGTTAATTAATCTTATAGTTTGTGTGTATAGCATTT

Coding sequence (CDS)

ATGAATCCTGACAATAATCCCAATAACTCCAGATCATCAGCTTTTGATCCGGCCGCCACGACCGGCGGAATTCAACCGCCAACGAAGGCAGAGAAAAACCCAAACTCAAAAGCTTCCACTGCCACTGCCACCGCCACCGCGGCCTCCAATAACGTGGGGAAGGCTTTGGCAGAGAGAGCAGTTTATGGATCCCAACAGCGGCGGACAGGAAGAAGAAGAAGAAACCTCATCCATGAACATGGCGCCACTCGGTTGCTTCCAAGTAGGCTTAGTAAAGTTTCTTTAGCTGATCATCATTATAATTCCTCACCCTCTGATTAA

Protein sequence

MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD*

Homology

[Close]

BLAST of CSPI03G14830 vs. ExPASy TrEMBL
Match: A0A0A0L5C0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 5.4e-48
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]

BLAST of CSPI03G14830 vs. ExPASy TrEMBL
Match: A0A5A7U2I2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001370 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.6e-38
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPA+TTGGIQP   AEKNPNSKA+TA   ATAASNN+GKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPASTTGGIQP---AEKNPNSKAATA---ATAASNNMGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYG+QQRRTGRRRRNLIHEHGA RLLPS LS+VSLADHHYNS PSD
Sbjct: 61  VYGTQQRRTGRRRRNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

[Close]

BLAST of CSPI03G14830 vs. NCBI nr
Match: KGN57150.1 (hypothetical protein Csa_011148 [Cucumis sativus])

HSP 1 Score: 199.9 bits (507), Expect = 1.1e-47
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD
Sbjct: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 106

[Close]

BLAST of CSPI03G14830 vs. NCBI nr
Match: KAA0049530.1 (hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK16208.1 hypothetical protein E5676_scaffold209G001370 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MNPDNNPNNSRSSAFDPAATTGGIQPPTKAEKNPNSKASTATATATAASNNVGKALAERA 60
           MNPDNNPNNSRSSAFDPA+TTGGIQP   AEKNPNSKA+TA   ATAASNN+GKALAERA
Sbjct: 1   MNPDNNPNNSRSSAFDPASTTGGIQP---AEKNPNSKAATA---ATAASNNMGKALAERA 60

Query: 61  VYGSQQRRTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
           VYG+QQRRTGRRRRNLIHEHGA RLLPS LS+VSLADHHYNS PSD
Sbjct: 61  VYGTQQRRTGRRRRNLIHEHGAIRLLPSTLSRVSLADHHYNSPPSD 100

[Close]

BLAST of CSPI03G14830 vs. NCBI nr
Match: KAG6597562.1 (hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.3 bits (199), Expect = 5.7e-12
Identity = 62/99 (62.63%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 12  SSAFDPAAT---TGGI-QPPTKAEKNPNSKASTATATATAASNNVGKALAERAVYGSQQR 71
           S  FDPA T   TG     PTK EKNP+SKA        AAS+NVGKALA RAVYG+Q+R
Sbjct: 8   SRGFDPAITMPATGVTGNQPTKPEKNPSSKA--------AASSNVGKALAHRAVYGAQKR 67

Query: 72  RTGRRRRNLIHEHGATRLLPSRLSKVSLADHHYNSSPSD 107
            TG RRRN +H     RLLPSRLSKVSLAD   NSSPSD
Sbjct: 68  WTG-RRRNPVH---GVRLLPSRLSKVSLAD---NSSPSD 91

The following BLAST results are available for this feature:

BLAST of CSPI03G14830 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G14830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5C0	5.4e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G165670 PE=4 SV=1	[more]
A0A5A7U2I2	6.6e-38	86.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G14830 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57150.1	1.1e-47	100.00	hypothetical protein Csa_011148 [Cucumis sativus]	[more]
KAA0049530.1	1.4e-37	86.79	hypothetical protein E6C27_scaffold171G007850 [Cucumis melo var. makuwa] >TYK162...	[more]
KAG6597562.1	5.7e-12	62.63	hypothetical protein SDJN03_10742, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G14830 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G14830.1	CSPI03G14830.1	mRNA
CSPI03G14830.2	CSPI03G14830.2	mRNA