CSPI03G13510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G13510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionEF-hand calcium-binding domain-containing protein 4A
LocationChr3: 10193934 .. 10194646 (-)
RNA-Seq ExpressionCSPI03G13510
SyntenyCSPI03G13510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGATTGCTATATAAACCTCTTGATTCTTTGTAGCCTTCAAACCACAGCCATCTGATCCCTCTTTTCATAGTTTCATCTCATTTATATATAGTTCAAACCACCCCAAGTAGTAATAGTCTTTCACATTTGGAAGGGTGGCAAAAACAGAATTGACATTTCGAGTTGTTTTTCGATCACTCGGTTGAGAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGATTTTTACACTCATAAATGTGTTTGCCTTCAACCTTTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTT

mRNA sequence

CTAGATTGCTATATAAACCTCTTGATTCTTTGTAGCCTTCAAACCACAGCCATCTGATCCCTCTTTTCATAGTTTCATCTCATTTATATATAGTTCAAACCACCCCAAGTAGTAATAGTCTTTCACATTTGGAAGGGTGGCAAAAACAGAATTGACATTTCGAGTTGTTTTTCGATCACTCGGTTGAGAGATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGATTTTTACACTCATAAATGTGTTTGCCTTCAACCTTTGTAACTTCTATATGAATGTTGTTCTTGTTTTTGAAGTCTGCAATGTCCACTTGTCTTT

Coding sequence (CDS)

ATGCCAGGATTTGGTGTTTTCCCTCTTGGTAGCTGCTTTGATGGGTGTAGAGACCATGCTCAAGCGTCGGGATTCGGCACTCGAATATGGAACTTGAGCGATAGACCAGTAGAGCTGCAGATAAGGGTGGGATCGATATTGAAAAAAGTGCATAGTTTGAAGCCAGGATGCTCAAAGAGGTTGAAATGTAAGAGTATTTACAAAGCATATATGCCAGGAAGAAGTATGAAGAGCTTGCTTTATTACTATGATGAAGCTTGTCAACCTTATGTTTGGATACATGAAAGTGGAGGTGATTCCATGAGAATGGTGAAGCAACAATACATCAGTCTTGAAGATCTAAGGGAGTTTTCTGAGATCAGAATCTTTAGGGATCATCAACGTGGCTGCATATCGGTTCGTAAGAAACAGAGGCCCGATTTTTGCTGA

Protein sequence

MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIFRDHQRGCISVRKKQRPDFC*
Homology
[Close]
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match: A0A0A0L8V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.6e-79
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKKQRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match: A0A5A7U2C9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00050 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.0e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match: A0A1S3AWR3 (uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.0e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match: A0A6J1F8W2 (uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC111443378 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.1e-76
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

[Close]
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match: A0A6J1I9A2 (LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX=3661 GN=LOC111472255 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 135/142 (95.07%), Postives = 137/142 (96.48%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDH QASGFGTRIWNLSDRPVELQIRVG ILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHTQASGFGTRIWNLSDRPVELQIRVGXILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

[Close]
BLAST of CSPI03G13510 vs. NCBI nr
Match: XP_011650993.1 (uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical protein Csa_009946 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 3.3e-79
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKKQRPDFC
Sbjct: 121 RIFRDHQRGCISVRKKQRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. NCBI nr
Match: XP_008438723.1 (PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 uncharacterized protein E6C27_scaffold171G006430 [Cucumis melo var. makuwa] >TYK17161.1 uncharacterized protein E5676_scaffold434G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 302.4 bits (773), Expect = 2.1e-78
Identity = 139/142 (97.89%), Postives = 141/142 (99.30%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTR+WNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRVWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQY+SLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYVSLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGCISVRKK RPDFC
Sbjct: 121 RIFRDHQRGCISVRKKPRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. NCBI nr
Match: XP_038875149.1 (uncharacterized protein LOC120067683 [Benincasa hispida])

HSP 1 Score: 298.5 bits (763), Expect = 3.1e-77
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILK+VH+LKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKRVHNLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGC+SV KK RPDFC
Sbjct: 121 RIFRDHQRGCVSVHKKPRPDFC 142

[Close]
BLAST of CSPI03G13510 vs. NCBI nr
Match: XP_022936946.1 (uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothetical protein SDJN03_10647, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028926.1 hypothetical protein SDJN02_10109, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 294.7 bits (753), Expect = 4.4e-76
Identity = 137/142 (96.48%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

[Close]
BLAST of CSPI03G13510 vs. NCBI nr
Match: XP_023522910.1 (uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 294.3 bits (752), Expect = 5.8e-76
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0 

Query: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKR 60
           MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRP+ELQIRVGSILKKVHSLKPGCSKR
Sbjct: 1   MPGFGVFPLGSCFDGCRDHAQASGFGTRIWNLSDRPIELQIRVGSILKKVHSLKPGCSKR 60

Query: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEI 120
           LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQ+ISLEDLREFSEI
Sbjct: 61  LKCKSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQFISLEDLREFSEI 120

Query: 121 RIFRDHQRGCISVRKKQRPDFC 143
           RIFRDHQRGC+SVRKK R  FC
Sbjct: 121 RIFRDHQRGCVSVRKKPRLGFC 142

[Close]
BLAST of CSPI03G13510 vs. TAIR 10
Match: AT3G06145.1 (unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 163.7 bits (413), Expect = 1.1e-40
Identity = 77/135 (57.04%), Postives = 101/135 (74.81%), Query Frame = 0 

Query: 9   LGSCFDGCRDH-----AQASGFGTRIWNLSDRPVELQIRVGSILKKVHSLKPGCSKRLKC 68
           L  C+ GC D         +   TR WNLSDRPVELQIRVGSILK+VH+LKPG SK+L+ 
Sbjct: 28  LRQCYGGCGDRTHLLPCSIATTSTRFWNLSDRPVELQIRVGSILKRVHTLKPGRSKKLRH 87

Query: 69  KSIYKAYMPGRSMKSLLYYYDEACQPYVWIHESGGDSMRMVKQQYISLEDLREFSEIRIF 128
           +SI++AY+  +  +  L YYD+ C PYVW+HE+G D  +MVKQQY+SLEDLR++SEIR+F
Sbjct: 88  RSIHRAYVDDQEGRRWL-YYDDTCLPYVWVHETGTDLSKMVKQQYVSLEDLRDYSEIRVF 147

Query: 129 RDHQRGCISVRKKQR 139
           +D QRGC++V K+ R
Sbjct: 148 KDLQRGCVAVEKRDR 161

The following BLAST results are available for this feature:
BLAST of CSPI03G13510 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G13510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8V01.6e-7999.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G150060 PE=4 SV=1[more]
A0A5A7U2C91.0e-7897.89Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3AWR31.0e-7897.89uncharacterized protein LOC103483746 OS=Cucumis melo OX=3656 GN=LOC103483746 PE=... [more]
A0A6J1F8W22.1e-7696.48uncharacterized protein LOC111443378 OS=Cucurbita moschata OX=3662 GN=LOC1114433... [more]
A0A6J1I9A22.4e-7595.07LOW QUALITY PROTEIN: uncharacterized protein LOC111472255 OS=Cucurbita maxima OX... [more]
BLAST of CSPI03G13510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650993.13.3e-7999.30uncharacterized protein LOC105434839 [Cucumis sativus] >KGN57027.1 hypothetical ... [more]
XP_008438723.12.1e-7897.89PREDICTED: uncharacterized protein LOC103483746 [Cucumis melo] >KAA0049398.1 unc... [more]
XP_038875149.13.1e-7796.48uncharacterized protein LOC120067683 [Benincasa hispida][more]
XP_022936946.14.4e-7696.48uncharacterized protein LOC111443378 [Cucurbita moschata] >KAG6597467.1 hypothet... [more]
XP_023522910.15.8e-7695.77uncharacterized protein LOC111786960 [Cucurbita pepo subsp. pepo][more]
BLAST of CSPI03G13510 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G06145.11.1e-4057.04unknown protein; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bact... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G13510.1CSPI03G13510.1mRNA