CSPI03G10570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G10570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 8398791 .. 8399069 (-)
RNA-Seq Expression	CSPI03G10570
Synteny	CSPI03G10570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

mRNA sequence

ATGACGCAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Coding sequence (CDS)

ATGACGCAGAAATGGACAGAGGTACATTTGGGAGCAACTGAGGCTGAAATTGGAGGAATGAGTAAGAATATGGCTACCTGTTTTGGGAAAAAATATGAAACAAATGATAGAGGAGATGCATTCGTTGCACATGATGATGAAAACGAAGTATGGCAAACGACTTTCATCTGGCAAACGGGCGGTTTGGAGGAGGAAGAACTGCCTCCGATTGATGATATGATAGATGTTGGGAATGGTCTCAAAAGAAGGAAACTGTCACAACAGTTTTCCCTTTACTAG

Protein sequence

MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY*

Homology

[Close]

BLAST of CSPI03G10570 vs. ExPASy TrEMBL
Match: A0A0A0L4L5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129650 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.4e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

[Close]

BLAST of CSPI03G10570 vs. ExPASy TrEMBL
Match: A0A5D3D0S6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002960 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.9e-33
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIW--- 60
           M QKWTEVH GATEAEIGGMSKNM T  G+KYE+NDRG+ F+AHDDE EVW+TT IW   
Sbjct: 1   MIQKWTEVHFGATEAEIGGMSKNMVTYIGEKYESNDRGETFLAHDDEKEVWRTTEIWDWD 60

Query: 61  --------QTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
                   QT GLEEEELPPIDDMID  N LKRRKLSQQFSLY
Sbjct: 61  DTQGDFIQQTYGLEEEELPPIDDMIDGENDLKRRKLSQQFSLY 103

[Close]

BLAST of CSPI03G10570 vs. ExPASy TrEMBL
Match: A0A5A7U150 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003620 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.6e-32
Identity = 74/103 (71.84%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIW--- 60
           M QKWTEVH  ATEAEIGGMSKNM T  G+KYE+NDRG+ F+AHDDE EVW+TT IW   
Sbjct: 1   MIQKWTEVHFEATEAEIGGMSKNMVTYIGEKYESNDRGETFLAHDDEKEVWRTTEIWDWD 60

Query: 61  --------QTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
                   QT GLEEEELPPIDDMID  N LKRRKLSQQFSLY
Sbjct: 61  DTQGDFIQQTYGLEEEELPPIDDMIDGENDLKRRKLSQQFSLY 103

[Close]

BLAST of CSPI03G10570 vs. NCBI nr
Match: KGN56708.1 (hypothetical protein Csa_010450 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 2.8e-47
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60
          MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG
Sbjct: 1  MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIWQTG 60

Query: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
          GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY
Sbjct: 61 GLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 92

[Close]

BLAST of CSPI03G10570 vs. NCBI nr
Match: TYK17432.1 (hypothetical protein E5676_scaffold434G002960 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.9e-33
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIW--- 60
           M QKWTEVH GATEAEIGGMSKNM T  G+KYE+NDRG+ F+AHDDE EVW+TT IW   
Sbjct: 1   MIQKWTEVHFGATEAEIGGMSKNMVTYIGEKYESNDRGETFLAHDDEKEVWRTTEIWDWD 60

Query: 61  --------QTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
                   QT GLEEEELPPIDDMID  N LKRRKLSQQFSLY
Sbjct: 61  DTQGDFIQQTYGLEEEELPPIDDMIDGENDLKRRKLSQQFSLY 103

[Close]

BLAST of CSPI03G10570 vs. NCBI nr
Match: KAA0049130.1 (hypothetical protein E6C27_scaffold171G003620 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.3e-32
Identity = 74/103 (71.84%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MTQKWTEVHLGATEAEIGGMSKNMATCFGKKYETNDRGDAFVAHDDENEVWQTTFIW--- 60
           M QKWTEVH  ATEAEIGGMSKNM T  G+KYE+NDRG+ F+AHDDE EVW+TT IW   
Sbjct: 1   MIQKWTEVHFEATEAEIGGMSKNMVTYIGEKYESNDRGETFLAHDDEKEVWRTTEIWDWD 60

Query: 61  --------QTGGLEEEELPPIDDMIDVGNGLKRRKLSQQFSLY 93
                   QT GLEEEELPPIDDMID  N LKRRKLSQQFSLY
Sbjct: 61  DTQGDFIQQTYGLEEEELPPIDDMIDGENDLKRRKLSQQFSLY 103

The following BLAST results are available for this feature:

BLAST of CSPI03G10570 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G10570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4L5	1.4e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129650 PE=4 SV=1	[more]
A0A5D3D0S6	1.9e-33	72.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U150	1.6e-32	71.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI03G10570 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56708.1	2.8e-47	100.00	hypothetical protein Csa_010450 [Cucumis sativus]	[more]
TYK17432.1	3.9e-33	72.82	hypothetical protein E5676_scaffold434G002960 [Cucumis melo var. makuwa]	[more]
KAA0049130.1	3.3e-32	71.84	hypothetical protein E6C27_scaffold171G003620 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G10570 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G10570.1	CSPI03G10570.1	mRNA