CSPI03G10480 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G10480
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 8364484 .. 8364705 (+)
RNA-Seq ExpressionCSPI03G10480
SyntenyCSPI03G10480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

mRNA sequence

ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

Coding sequence (CDS)

ATGTCACCAACAAATCTGACCTTAACTTACAGTTTCGGCCAGACGAGCAGCGATAGAAGCGGCGCGGAGTGGCAATCGACAGGCAGTGAGCGGCGCGGCTTAAAGGACTGCACGGCTGGGCTCGGCTCAGCGAACGTTGGCCGAGCGGGGCGCAAACACCCGAGGGCGGCGGCTGAAGAGCATGGACTCGGGGTGGGCTGCGTGGTTGAGGGAGGAGAATAA

Protein sequence

MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEEHGLGVGCVVEGGE*
Homology
[Close]
BLAST of CSPI03G10480 vs. ExPASy TrEMBL
Match: A0A0A0L408 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129570 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60
          MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE
Sbjct: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60

Query: 61 HGLGVGCVVEGGE 74
          HGLGVGCVVEGGE
Sbjct: 61 HGLGVGCVVEGGE 73

[Close]
BLAST of CSPI03G10480 vs. NCBI nr
Match: KGN56700.1 (hypothetical protein Csa_010853 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 4.5e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60
          MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE
Sbjct: 1  MSPTNLTLTYSFGQTSSDRSGAEWQSTGSERRGLKDCTAGLGSANVGRAGRKHPRAAAEE 60

Query: 61 HGLGVGCVVEGGE 74
          HGLGVGCVVEGGE
Sbjct: 61 HGLGVGCVVEGGE 73

The following BLAST results are available for this feature:
BLAST of CSPI03G10480 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G10480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4082.2e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G129570 PE=4 SV=1[more]
BLAST of CSPI03G10480 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56700.14.5e-32100.00hypothetical protein Csa_010853 [Cucumis sativus][more]
BLAST of CSPI03G10480 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G10480.1CSPI03G10480.1mRNA