CSPI03G10350 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G10350
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationChr3: 8298959 .. 8299513 (+)
RNA-Seq ExpressionCSPI03G10350
SyntenyCSPI03G10350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCCCTATCTTTCTCATCTTGAAAAGTTTCTAAATTACTCTTTTAGAAGTTTGAATGTTCAATAATCATTACTGAAAGTTTAAGAGTGTAATTGTAACTATCACCATACTCTATAAGTGGTTTTTATAATGTGTCCTCGTCGATTTGTTGATTTAAGAGAGGTTGCAACCAACCAACAAGAGATGAGAAAGATAGATATAATTGATAAAATAAAAAATTTAAGAATGCAATTGTTACAAACCTAATTTAGGGAGGGTTTGTTTAATTTTTGTATTAATTCATTATTTAGATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTTCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

mRNA sequence

ATGTTCCCTATCTTTCTCATCTTGAAAAATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTTCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

Coding sequence (CDS)

ATGTTCCCTATCTTTCTCATCTTGAAAAATTGGGCTGAAATCGTTTCAACAGCCCAACTAGCAGACGAGCTTCTCAACAGAGCCCAATTTTCGGCCCAAATTCAGCTGAGTAAGGCCCATTTCAGAAACAACATGCCCATTTGCCAAAACGTCGTCTTCCTTCTTGACCATACAAAACAAAGTCCCGTTCGTAGTTCCTTCCCGCCTCTTTCGCCGGCATTTACGCTTCAGCTACTCGCCGTCCGGCGAGTTATCGCCGATCATACTGCGCGTTGGAATGGAATTCGGTAG

Protein sequence

MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQSPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR*
Homology
[Close]
BLAST of CSPI03G10350 vs. ExPASy TrEMBL
Match: A0A0A0L994 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128940 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.6e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60
          MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ
Sbjct: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60

Query: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 97
          SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR
Sbjct: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 96

[Close]
BLAST of CSPI03G10350 vs. ExPASy TrEMBL
Match: A0A5D3D1G3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003140 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 45 MPICQNVVFLLDHTKQSPVRSSFPPLSPAFTLQLLAVRRVIADHTA-RWN 94
          MPICQNVVFLLDHTKQSPVRSSFPP+SPAFTLQ LAVRRVI+DHTA +WN
Sbjct: 1  MPICQNVVFLLDHTKQSPVRSSFPPVSPAFTLQQLAVRRVISDHTAVKWN 50

[Close]
BLAST of CSPI03G10350 vs. NCBI nr
Match: KGN56686.1 (hypothetical protein Csa_011352 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60
          MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ
Sbjct: 1  MFPIFLILKNWAEIVSTAQLADELLNRAQFSAQIQLSKAHFRNNMPICQNVVFLLDHTKQ 60

Query: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 97
          SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR
Sbjct: 61 SPVRSSFPPLSPAFTLQLLAVRRVIADHTARWNGIR 96

[Close]
BLAST of CSPI03G10350 vs. NCBI nr
Match: TYK17450.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 45 MPICQNVVFLLDHTKQSPVRSSFPPLSPAFTLQLLAVRRVIADHTA-RWN 94
          MPICQNVVFLLDHTKQSPVRSSFPP+SPAFTLQ LAVRRVI+DHTA +WN
Sbjct: 1  MPICQNVVFLLDHTKQSPVRSSFPPVSPAFTLQQLAVRRVISDHTAVKWN 50

The following BLAST results are available for this feature:
BLAST of CSPI03G10350 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G10350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9941.6e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128940 PE=4 SV=1[more]
A0A5D3D1G31.3e-1690.00Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of CSPI03G10350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56686.13.2e-46100.00hypothetical protein Csa_011352 [Cucumis sativus][more]
TYK17450.12.7e-1690.00pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
BLAST of CSPI03G10350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G10350.1CSPI03G10350.1mRNA