CSPI03G10050 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G10050
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 8089497 .. 8089766 (+)
RNA-Seq Expression	CSPI03G10050
Synteny	CSPI03G10050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

mRNA sequence

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

Coding sequence (CDS)

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAAACACTACACCACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGCAAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATCAATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTCTCTGCTTAGAATGTGTTCGACAAAATGCCTCAAATTAA

Protein sequence

MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTINCREASERELDSLLFSETLCLECVRQNASN*

Homology

[Close]

BLAST of CSPI03G10050 vs. ExPASy TrEMBL
Match: A0A0A0L4H2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.7e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSLLFSETLCLECVRQNASN 90
          CREASERELDSLLFSETLCLECVRQNASN
Sbjct: 61 CREASERELDSLLFSETLCLECVRQNASN 89

[Close]

BLAST of CSPI03G10050 vs. ExPASy TrEMBL
Match: A0A5D3D1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003450 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.4e-09
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTI 60
          MSRLLSEIPHAPNT      F    +    P     P G+WAAAQSAIKADLAYLDRTI
Sbjct: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTI 59

[Close]

BLAST of CSPI03G10050 vs. NCBI nr
Match: KAE8650283.1 (hypothetical protein Csa_011158, partial [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 3.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60
          MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTIN 60

Query: 61 CREASERELDSLL 74
          CREASERELDSLL
Sbjct: 61 CREASERELDSLL 73

[Close]

BLAST of CSPI03G10050 vs. NCBI nr
Match: KAA0049083.1 (hypothetical protein E6C27_scaffold171G003120 [Cucumis melo var. makuwa] >TYK17480.1 hypothetical protein E5676_scaffold434G003450 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTI 60
          MSRLLSEIPHAPNT      F    +    P     P G+WAAAQSAIKADLAYLDRTI
Sbjct: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTI 59

The following BLAST results are available for this feature:

BLAST of CSPI03G10050 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G10050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4H2	1.7e-42	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1	[more]
A0A5D3D1J1	5.4e-09	62.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G10050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650283.1	3.2e-32	100.00	hypothetical protein Csa_011158, partial [Cucumis sativus]	[more]
KAA0049083.1	1.1e-08	62.71	hypothetical protein E6C27_scaffold171G003120 [Cucumis melo var. makuwa] >TYK174...	[more]

BLAST of CSPI03G10050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G10050.1	CSPI03G10050.1	mRNA