CSPI03G08750 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G08750
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA polymerase I-specific transcription initiation factor RRN3
Location	Chr3: 7261992 .. 7269469 (+)
RNA-Seq Expression	CSPI03G08750
Synteny	CSPI03G08750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATAATATGTTCAATCCCCTTCGTTCGCATTCGCCGTCAGCTGCTTCTCTCTCCCAATCTTCGTTCGACGGTCGCAGTCCTCATCGGTCCCTCTACTCTGCCGTTTGCCCTTGTAGCTGGTTTCGCTGGATCTCAATCTAACCCACTGGTCTCAGGTTCGTCTTCTTCATTTTCTGAGATACTGCATCTTTTTTTTCTTGGCTATTTAAACTTCTTGTGACTGGATTCTGGGTTTTTATTGGGTAACTATGGGGTCTTGTTTACCGGTTACGTTGGTTTTCGCGTTTGTCGGAGCTGGTCAAAGAAGAATTATACTAAAAGGCTTTTGCTATTTCATTGCTTTCAAGTTGTCACTACACAGAATTCAATTAAAGCGGTTAACGTTTTTGTTGTTGTTGAAATCTTAAAATTAGTTGATATTTTCACGTTTTTAAAGTTCCTAGTTCATTCAATTCGAGGGTTATTATCACTATCATCATTACTACTATTATTGGAAGAGTATTTTGTAGTTCTTTGGTGTGATATGTACATGGGACATAATGCTTCCGTCTATTTTTTTTGGAAACTGACATGTGGTCGTGTTGTATTCGCGTTTGTGACTATTGGGGAAGAATGTACCGGGGATATGGCAAGGTGGTCTATTCACAATGTCATGTGATGAGACTAGTCATGTTGTTTCTGCGTTAGTTCACGTCTTCAAAGTTTTTTTTTTTCGTGTTTTTGTTTTGATCAAAGTTCCAAAACTAGCACGTTTGCTCTCATTTTGATGATTATCTCGTTCAATGTTTTGATAATGCTTCCGTCTATTTTTTTTGGAAACTGACATGTGGTCGTGTTGTATTCGCGTTTGTGACTATTGGGGAAGAATGTACCGGGGATATGGCAAGGTGGTCTATTCACAATGTCATGTGATGAGACTAGTCATGTTGTTTCTGCGTTAGTTCACGTCTTCCAAGTTTTTTTTTCGTGTTTTTGTTTTGATCAAAGTTCCAAAACTAGCACGTTTGCTCTCATTTTGATGATTATCTCGTTCAATGTTTCTTTGAATTATTTATTTTTGTATGAATAAATTATTTTCAACGATGTTCCTAATAAAATATTTACTCACGTTTTCTTTAAACGAACCCTTTTCTTCCAGTTGGTTTTGAGTCTGACTTATCATGCACGAAGGAATCTTATTTACCTTTTATTTTCCCTAATTATTTTGTTTGAATCTTTTGTTCATTTGTTTTCATGCTTCAGGTTTGAATTTTATCCTGTTCTCAGGCCCCACTCTGACGATAGGATTTCAATAGGGGCTGGGCTTTAATCATGGGGGCGGAACTGGAAAATAATCAGGCTCAGTTGCACGCTATGGAAGATGTTAATCTTACAGATGCCCAGTTAGTTGATTTCATTAGGGGTTTTCTTAGTTCAGTGTCACTGGTATTGTTCTCTTAACATCATTATTGGTCTTTACTTAAATAAGAGATCATATAGCAATTGATTTTCGAAGTGCACTCTCTTAGTTTATTATTTGGGACGTGCGTTTGGGTTCTCACTGCTAATCAAGTTATTTTTTGAGTAATAACTGTTGTAACCTTATGAAATCTCTTCCATTGGTGTAGGGAGATATCGATGGGTATAACCAGCTTGTGGGTGTTATACACCACAGGGATCGACTATCTCCCGATGAGGTTGCCTTGCTTGTGGTATGTTCTTTTCAACACATCTGTTTTTGACAAATGATACGAGATTTAACTTCACGTTAAATATTATCTAGTTTGTAACTCACTTGATGCACTTAACAGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTGCTTGCAGCAGTAAGTTTATCTCTAAACTCCGAGTCACTATCCTGCAATTTTGTTGTTGTAATGAAAGTTCTTTCTCAGATTTTTAAAATGAGCTTGTGGGATTACGGATCTAATGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGTACGAGAATTTATGATAATAGTTTTCACATTTTCTCTAGGCTCAGCTAAGAGTTCCAAGTTTTTCTGACTTTTTTTCTTTTCACTGTTTCAGGCTGTTTCAAATGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAACTTCATGCCGCCCAATTCCTACATGGATTTACTGAAGAAACCACATGGTCTTACCAGAAAGGAGGAAGTTCTTTCTCGAGTGCACACAGCTCTAAAAGATATATCGGACTTGGTGCCTCTTGCACCGTTGAGATTGGAGCAGAAAGTTGTCCATAAAATGCAAAGGGTCTTTTTCAATGAATCTGTGAGTTGAATTTTCATGGCTAAAAGTTGCGTTAGAGAAATCCAACTGAAAGTTGTTTTTATTTCTCATCAAAGATCATCGATATTTTATCTCTGTAATGTTTTCTCTAAAAAATATTGCTAATTTTGGTATTTTTTTAAAAAATTTCCACCATTGTTTTCTTTTCACGATCATCATTCCAATGACTATTGGAAGTTTGGTGTGAAGCTGAAAGCCCATTACCAGTTTGTATCCTTTGGCTTTGGCACACTGAAGTATTAGATGACTAGATTTATATTGTTTCGAATTTTGATTACCCTACCAAACATAGTTCAAACTAGAACAATGCCTGATAATGATTTATAGATGAAATGCAGTGTATATTTACTAGATGCTGCACTGGTACGATCTTTGAACGTACACACTTCTCTTAAATTTTGTGAATAAGTACGTTCATATGATTCAGATTGATAGGTCATTTAAAGAGTCAGGTACAAAAAAGATGATTACATTTTCAAAATCCCTGACTGAAAATTTTTATAGATGCTTTTTGCTTGCTTTGAGGAGAGAAATTGCTTTGATATCTTTTTAGAATAATCTTTTAAAAGCTCAATGTCTATTTCACCTTCAAAACACTTGCACTCTTTGTTATGGTTTTTTAAAAAAATTAGATTATTTTTTAAAAAATATATTGTGTCTCCCACTTACACTTGTTTAATCCCAATGTAGTGTGTGTGTGTGTCTATACATATATTGTGTCTCCCACTTACATCTGTCTAATCGCTCTGTAGTTGACCACGATATATGTGGAAAATATGTTGAGGTTGGAAAAGGGTGCACTGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTCTAGATTTGGATGTAAGGGAACACAAGTATTTTACTGCACATTTGTTTATGCGATTGCTTTATCATTAATATTAATTAGGTCTAACCTTCTGGTAGGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGACGACGACACTACAGATGATATTAATGAGGATTCTAGTGAGGTATGATATTCGATACCTAGGCTGGATGTTGAAGGAGATTTCTTCAACTATGTTGTAATGGTATTTAATCTCTTTCTTAGCTTTTCTTCGTTTTGTTTTGAAGAAGAGCTTGAGGCTTATGCCGTAAGGCTCATCTATAGGCAAGACTCTACTCTTTAACTTTTAGCCTCAAGATTTACCCATTTGTTGAAAAAAAAGGCTTACCCATTGGTAAAAAGGCATTAGTAATAATGATTATGATTAAGAACATAATTGATTTGTGTCATTCTTTTAAAATACAGAGGTTTAAGTTGTGATGATTTGGACTATTGCTACTTTTAGTATTGTGACTTTAAAAACATTGAAGACGATAAATTATAGTATAAGTTAATCCTATTAATGATAATAGTAGTGATGTTATAAATATCATTTTAAAAAATATATTTTTTTAAGTGGAAATTGACGGGGTGAACTTTTTTTACTACTACTATAGTTTTATGTTTAACAACACGTGGTCATGCCAATTTTAGATTTGTAAAACGTTTTTAATTAACTTTGAGGCTTACAACTTGCCTTGAAGCTAATTGGCTTTTGGGTCTACATAGTTTATACTCAAGCTGAGTCAGGTTTTTAGAAATGATATGTGACTTTTTTTTTTGAAAAATTACTTACATTTTGACTTTTCTGCCATACATCTTGATGCTTCTTTTAATTCATGCCGTTTTTTGATTGGCTAAATTTAATTGCTAGCTTCCAAGAGAACTAAGCCGTAGAAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTACCTTCTGTAGTTTATATAATCTTCTTTTGTTCTCAATTTCTTTGTTTTGTTCTGCAAATATGAATCGTTCCATGTTTCTTTAATGTGGAGGTCAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCTCAGGTAATTAACATGCCCTTGCCATAATTCTCGATATTTGCTTGGTTTAGTGGGCCCTCATTTTATATAATTTTTTTTGTTTATGGAGACTGAATGACTTGCTTTTGATGCCTTTTTTTGGCAGTTTATCGTGTTCTATGCTTGTTCATTAGATCCTGAAGTTTGTGGTGCGAGATTTGCCATTTCGCTGGCTGATATGTTTGTTTCCTGCAATGATCCTCCGCTTATCAGGTATTAGCAATTTATTAGAATTTTATATACAATTTGTTTGAATAGCTGAGTAGCCTTGTACATAAAATATAATCTTACAACTTCCCTCTGTCTCACACACTAGTGGGTTCCCTGTCTGAACCTGCCCTCAAACAAATATTTTCATTTTTTCTACAAAAATGAATTTGTTCTTAGCCTTTGAAAACACAAAAAAAAATTCGTCCTCCTTTTCTTTTTTCTTTTTAATATAAAAATGAAGTTAAGTAATGTATGTTTGCAATGTTGTGCAGGATGAGTGCTGTTTCATATCTTGCTAGTTTCTTATCTCGTGGGAAGTTTTTGACAACCTCTTTGGTTACAACTATATTGAAAAGGTTAACTTGACAACTTCAACTATATTTTGATGAAATTAATATCGGTAGGGTGTGGCTCTAAGTCTAGTTTTGCTTCTTATTTCTTTCAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGTATACAATGCTTGAACTCCTTATTGCTAGACTAATGCATTTACTTGGTCTTCTACTTCTAAATTCTGTTGTAATTATAACCCTACCCAAACTTATTCTAGCTGGGATTTTTTCCCTTGTAAAATATCTTTCCCACTCCAACTCCACTAACACGGAAAGATAATTTAACCTCTGAGATTATTGTTATCTAATTCTCCCCCTTATATTCATGAAAATCAAGGGGTCAATTGGCAAACCCTGAAATAGTTTTTTCGGTTACTTTATTTTATTTTTGTTATTTTAAAATCTCCCTCGTTGAGTCCCAAAGAAATAAAACTGGACTTTGAAATATTGATTCAATTCTAACTCCTTGCATTGCATCTTGGAGAATGAACTTCATGAATGTGTTGGTTAATTAGAAAAAATTGCATTCTTGCAATTTTTCATTTACAAGATTTAGAACTTTTCCCCCCCTTTTTTTTTAATGATTTCATTTTTACAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAAATTCCACGTCTGAAGTCCCAACTTCTGCTTATGCCCATAGGTCCACTCTTGACGCATAGATTAAGCCCACTGAAGGTGGGTAATTGGTTGACCCCTTTATCTTTGGTGGTTTTTGTTTTGTTATAAATTGTTCGGCTATTTATTCCTTGTCCTTGAAATCAACGTTTATGATCTAAAACCAAGTAACCATATGGTACTTGAGGTCCATTGATTTTTTTTTTTTTTAAATTCATATAGCCTCTATTCCTCCCTCTTGAGAAATTGGAGATATCTTTTGCAAATCCAATGGTTCAGGCAATATGCCCCCCTCTTTTGCAAATTTCATACATCAATAAAACTTGTTTCTTGTAATTATATAACCTTTCAATTTTTGTGGTAAAAACGTTAATCTTCCTCATGGGCACCATCCATTAAGTTGGAAATATTTATAAGTTAACATTTTGGCTTTGGAGCTTGACGTCTTCTTTTGTAATTTTGCAACTCCTCTCCATTGCTTCACAATATTGAATCCACAAATCTGGGATTTCTGCTATAGTTTTGATGTTGTGTCATTAACCTCTAAAATGATTCATTCATGGTCTGAAGCGCTGTTCTTTGCAATTTTCTTAAAACGAAATTTATTTTAATTTCTTGTTTAACAGGTTTGCCTTCCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTACACCGTCGGAGAATTTTATATTCAATGGTTTGCTGGAATCTGACTATTCAAGAAGTTTTGGTGGATTAGAAAGGCTTGACATGTTTTTTCCGTTTGATCCTTGCTTATTAAAAAAATGTGACAGGTATATACTCTTATTGTTAATCTTCTTTATTTCCTTTTCAAGACAACAAATGATAGATGGATCATAGAACCATTATAAATATGAACACACGCAGAAGAATTTATAAAATGATTCTGCTTGCTCATTGTGGCTATGCTTTATATTCAAAATGATTGATTGGTAAGAGTGAGTACGCTTGAGAACGTGAAGGTGTACTGATGTTTTGTTTGACTTTTCGTTTGAATTTTTGACTCATGCTTTGTTGTTCCTCTTTGTTTATGAAGATATCTTCGGCCACATTTTGTATACTGGTCGATGGTCAGACCTACCTATGACGAAGAAGAAGAAGAAGAGGATGATGGAGGTAGCAGTGATGAAGATGCAGAGATCTTTCCAGATAGAATTGATGAAAACCTTATGGATGATGAAGCAATGGCAATAAGCTACGACGACCAAGATTTTGATCTTGATTCTGGATTAAACAAAATGTCCATCACACCAAGAAATTCACTTCAGTACCGATGTGATTTTGTTCAGATGCCCTCGAGAATCCGACCCTCAATGAGTCCAGAATTCTTTTGATAACATATCGCAGCTTGAATAGTTAACTGGAATGCTAATGAGAATGGCGCTGGGGGCAGATGCATATTTCCATGAACATGGTGATTGCAAATCTAGTTTGGGTTTTTTGGGTTTGTCTTTGTTTTTACTTAAAATGTATGATAAATAGGTGGGTTAGAATTGTTGGTTGGGGGTGGGTTCAGTTTTGAATTATTCCTTTTTCTAGCTTTGCAGCGCTTTGATTATTGCCCTTGTTATTCTTTACACTCCAGGCTTGTAATAGTTTTAGTAAGTCATCAAATACTGCCAAAATTTTGTACTCTTTTCAGTGATACATGTACAAGTAAAAGTTTTCCTTGTAATTCAAACCCATCTAATTAGGCTTTCTTTCTTTT

mRNA sequence

GCTATAATATGTTCAATCCCCTTCGTTCGCATTCGCCGTCAGCTGCTTCTCTCTCCCAATCTTCGTTCGACGGTCGCAGTCCTCATCGGTCCCTCTACTCTGCCGTTTGCCCTTGTAGCTGGTTTCGCTGGATCTCAATCTAACCCACTGGTCTCAGGTTTGAATTTTATCCTGTTCTCAGGCCCCACTCTGACGATAGGATTTCAATAGGGGCTGGGCTTTAATCATGGGGGCGGAACTGGAAAATAATCAGGCTCAGTTGCACGCTATGGAAGATGTTAATCTTACAGATGCCCAGTTAGTTGATTTCATTAGGGGTTTTCTTAGTTCAGTGTCACTGGGAGATATCGATGGGTATAACCAGCTTGTGGGTGTTATACACCACAGGGATCGACTATCTCCCGATGAGGTTGCCTTGCTTGTGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTGCTTGCAGCAATTTTTAAAATGAGCTTGTGGGATTACGGATCTAATGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAATGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAACTTCATGCCGCCCAATTCCTACATGGATTTACTGAAGAAACCACATGGTCTTACCAGAAAGGAGGAAGTTCTTTCTCGAGTGCACACAGCTCTAAAAGATATATCGGACTTGGTGCCTCTTGCACCGTTGAGATTGGAGCAGAAAGTTGTCCATAAAATGCAAAGGGTCTTTTTCAATGAATCTTTGACCACGATATATGTGGAAAATATGTTGAGGTTGGAAAAGGGTGCACTGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTCTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGACGACGACACTACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGCCGTAGAAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCTCAGTTTATCGTGTTCTATGCTTGTTCATTAGATCCTGAAGTTTGTGGTGCGAGATTTGCCATTTCGCTGGCTGATATGTTTGTTTCCTGCAATGATCCTCCGCTTATCAGGATGAGTGCTGTTTCATATCTTGCTAGTTTCTTATCTCGTGGGAAGTTTTTGACAACCTCTTTGGTTACAACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAAATTCCACGTCTGAAGTCCCAACTTCTGCTTATGCCCATAGGTCCACTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTTCCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTACACCGTCGGAGAATTTTATATTCAATGGTTTGCTGGAATCTGACTATTCAAGAAGTTTTGGTGGATTAGAAAGGCTTGACATGTTTTTTCCGTTTGATCCTTGCTTATTAAAAAAATGTGACAGATATCTTCGGCCACATTTTGTATACTGGTCGATGGTCAGACCTACCTATGACGAAGAAGAAGAAGAAGAGGATGATGGAGGTAGCAGTGATGAAGATGCAGAGATCTTTCCAGATAGAATTGATGAAAACCTTATGGATGATGAAGCAATGGCAATAAGCTACGACGACCAAGATTTTGATCTTGATTCTGGATTAAACAAAATGTCCATCACACCAAGAAATTCACTTCAGTACCGATGTGATTTTGTTCAGATGCCCTCGAGAATCCGACCCTCAATGAGTCCAGAATTCTTTTGATAACATATCGCAGCTTGAATAGTTAACTGGAATGCTAATGAGAATGGCGCTGGGGGCAGATGCATATTTCCATGAACATGGTGATTGCAAATCTAGTTTGGGTTTTTTGGGTTTGTCTTTGTTTTTACTTAAAATGTATGATAAATAGGTGGGTTAGAATTGTTGGTTGGGGGTGGGTTCAGTTTTGAATTATTCCTTTTTCTAGCTTTGCAGCGCTTTGATTATTGCCCTTGTTATTCTTTACACTCCAGGCTTGTAATAGTTTTAGTAAGTCATCAAATACTGCCAAAATTTTGTACTCTTTTCAGTGATACATGTACAAGTAAAAGTTTTCCTTGTAATTCAAACCCATCTAATTAGGCTTTCTTTCTTTT

Coding sequence (CDS)

ATGGGGGCGGAACTGGAAAATAATCAGGCTCAGTTGCACGCTATGGAAGATGTTAATCTTACAGATGCCCAGTTAGTTGATTTCATTAGGGGTTTTCTTAGTTCAGTGTCACTGGGAGATATCGATGGGTATAACCAGCTTGTGGGTGTTATACACCACAGGGATCGACTATCTCCCGATGAGGTTGCCTTGCTTGTGACATGTTTGAAGGCACTATCTGGAGCAGTTTCTTGTATAGATATCATTCTCCATGAATCTCTGCTTGCAGCAATTTTTAAAATGAGCTTGTGGGATTACGGATCTAATGTGATGGATGCCCTGATTGAACTAATAATATCCCTGGCTGTTTCAAATGGAAAATATGTGGATTCATGCTTGGATATGCTTGTAAATAACTTCATGCCGCCCAATTCCTACATGGATTTACTGAAGAAACCACATGGTCTTACCAGAAAGGAGGAAGTTCTTTCTCGAGTGCACACAGCTCTAAAAGATATATCGGACTTGGTGCCTCTTGCACCGTTGAGATTGGAGCAGAAAGTTGTCCATAAAATGCAAAGGGTCTTTTTCAATGAATCTTTGACCACGATATATGTGGAAAATATGTTGAGGTTGGAAAAGGGTGCACTGAGTGAATTTGTTGGGAGAAAGATCTTAACTGCGCTGGTGGATAAGCTTCTAGATTTGGATGTGGAGATTGGGTGGGATGATATCCTACAAGACGATTTCAGTAAAGGAATTTTTGAGATGGAACTTGAAGATGACGACGACACTACAGATGATATTAATGAGGATTCTAGTGAGCTTCCAAGAGAACTAAGCCGTAGAAGCTTAGGTGGAAATGTAATTGCTGAAACGTTAGATAGCTTGATTGTTCTAACATTTGAACATCTTGAATCATGTGAACGTGATGGACGATTGAATGAGGTTTTTGACATTTTACTCCTATCATTCCAAAGAACTGTTCTGACTGCTTACAAGTCTAAATTTGCTCAGTTTATCGTGTTCTATGCTTGTTCATTAGATCCTGAAGTTTGTGGTGCGAGATTTGCCATTTCGCTGGCTGATATGTTTGTTTCCTGCAATGATCCTCCGCTTATCAGGATGAGTGCTGTTTCATATCTTGCTAGTTTCTTATCTCGTGGGAAGTTTTTGACAACCTCTTTGGTTACAACTATATTGAAAAGACTGGTGGATTGGTGTTTAGAATATGGCAAAACACTGAATGTTGACCCGAACCCAAAGGCTCATAAAGTATTTTATTCTGGTTGCCAGGCCATAATGTATGTGCTTTGCTTCCGGATGAGGTCCATTTTGGAAATTCCACGTCTGAAGTCCCAACTTCTGCTTATGCCCATAGGTCCACTCTTGACGCATAGATTAAGCCCACTGAAGGTTTGCCTTCCATCTATTGTTGAGGAATTTCTTCGGCAGGCAAAAGTTGCTAATTTATTTACACCGTCGGAGAATTTTATATTCAATGGTTTGCTGGAATCTGACTATTCAAGAAGTTTTGGTGGATTAGAAAGGCTTGACATGTTTTTTCCGTTTGATCCTTGCTTATTAAAAAAATGTGACAGATATCTTCGGCCACATTTTGTATACTGGTCGATGGTCAGACCTACCTATGACGAAGAAGAAGAAGAAGAGGATGATGGAGGTAGCAGTGATGAAGATGCAGAGATCTTTCCAGATAGAATTGATGAAAACCTTATGGATGATGAAGCAATGGCAATAAGCTACGACGACCAAGATTTTGATCTTGATTCTGGATTAAACAAAATGTCCATCACACCAAGAAATTCACTTCAGTACCGATGTGATTTTGTTCAGATGCCCTCGAGAATCCGACCCTCAATGAGTCCAGAATTCTTTTGA

Protein sequence

MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPDEVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPEFF*

Homology

[Close]

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot
Match: B2RS91 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus OX=10090 GN=Rrn3 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-35
Identity = 142/525 (27.05%), Postives = 233/525 (44.38%), Query Frame = 0


Query: 85  ESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLK 144
           E L+  I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP     ++ 
Sbjct: 105 EQLINIILRLPWLNRSQRVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPR----VIV 164

Query: 145 KPHGLTRKEE---------VLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLT 204
           K  G+   +          +    H AL+ I+  VP  P  L   +V K   V  +E   
Sbjct: 165 KEGGIDVSDSDDEDDNLPAIFDTCHRALQIITRYVPSTPWFLMPILVEKFPFVRKSERTL 224

Query: 205 TIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFS 264
             YV N+LR+        + R+IL  +++KLL LDV +   DI              D +
Sbjct: 225 ECYVHNLLRI--SLYFPTLRREILELVIEKLLKLDVSVSRQDIEDAEEKAAQTCGGTDTT 284

Query: 265 KGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES-CER 324
           +G+F M   D+D+ TD   +   E P +++  +      AE LD L+ L   ++E  C  
Sbjct: 285 EGLFNM---DEDEDTDPEKKADQEQPNQMAHPT------AERLDVLLCLLLSYIEDVCRV 344

Query: 325 DGRLN-----EVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMF 384
            G+++     +++  L+  F + +L  + S   QF +F+ CS       A F   L    
Sbjct: 345 HGKIDNNKTKDLYRDLISIFDKLLLPTHASCHVQFFMFFLCSFKLGFAEA-FLEHLWKKL 404

Query: 385 VSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA-- 444
              N+P +IR +A +Y+ SFL+R KF+    V T L  LV+W   Y    N D   KA  
Sbjct: 405 QDPNNPAIIRQAAANYIGSFLARAKFIPLITVKTCLDLLVNWLHMY--LTNQDSGTKAFC 464

Query: 445 ----HKVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPLLTHRLSPLKVCLPS 504
               H  FYS CQA+ Y + FR + +L   + +    L  +    ++  +L+PLK+CLP 
Sbjct: 465 DVALHGPFYSACQAVFYTVVFRHKQLLSGNLKQGLQYLQSLNFERIVLSQLNPLKICLPQ 524

Query: 505 IVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSF--------GG------LERLDMFFP 553
           +V  F   A + N +      +F   +    SR          GG         LD FFP
Sbjct: 525 VVNFF---AAITNKY----QLVFCYTIMERNSRQMLPVIRSTAGGDSVQTCTNPLDTFFP 584

[Close]

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot
Match: Q5R4N9 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii OX=9601 GN=RRN3 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.2e-31
Identity = 140/515 (27.18%), Postives = 224/515 (43.50%), Query Frame = 0


Query: 85  ESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPP-----NSY 144
           E L++ I ++  W     V++  +  + +L  +   ++  CL M+ ++F+PP        
Sbjct: 107 EQLISIILRLP-WLKSQTVVEEYLAFLANLVSAQTVFLRPCLGMIASHFVPPRVIIKEGD 166

Query: 145 MDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYV 204
           +D+                 H AL+ I+  VP  P  L   +V K   V  +E     YV
Sbjct: 167 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYV 226

Query: 205 ENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ-----------DDFSKGIF 264
            N+LR+        +  +IL  +++KLL LDV     DI              D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQDIEDAEETATQTCGGTDSTEGLF 286

Query: 265 EMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES-CERDGRL 324
            M   D+D+ T+    ++   P  L +     + +AE LD L+ L   +++  C  DG++
Sbjct: 287 NM---DEDEETE---HETKAGPERLDQMV---HPVAECLDILMSLVLSYMKDVCYVDGQV 346

Query: 325 N-----EVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVSCN 384
           +     +++  L+  F + +L+ + S   QF +FY CS       A F   L       +
Sbjct: 347 DNGKTKDLYRDLINIFDKLLLSTHASCHVQFFMFYLCSFKLGFAEA-FLEHLWKKLQDPS 406

Query: 385 DPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA------ 444
           +P +IR +A +Y+ SFL+R KF+    V + L  LV+W   Y    N D   KA      
Sbjct: 407 NPAIIRQAAGNYIGSFLARAKFIPLITVRSCLDLLVNWLHIY--LNNQDSGTKAFCDVAL 466

Query: 445 HKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMP---IGPLLTHRLSPLKVCLPSIVE 504
           H  FYS CQA+ Y   FR + +L    LK  L  +       ++  +L+PLK+CLPS+V 
Sbjct: 467 HGPFYSACQAVFYTFVFRHKQLLS-GNLKEGLRYLQSLNFEWIVMSQLNPLKICLPSVVN 526

Query: 505 EFLRQAKVANLFTPSENFIFNGLLESDYSRSFGG-------LERLDMFFPFDPCLLKKCD 553
            F        L         N        RS  G          LD FFPFDPC+LK+  
Sbjct: 527 FFAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQTCTNPLDTFFPFDPCVLKRSK 586

[Close]

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot
Match: Q9NYV6 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens OX=9606 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.5e-30
Identity = 136/514 (26.46%), Postives = 224/514 (43.58%), Query Frame = 0


Query: 85  ESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPP-----NSY 144
           E L++ I ++   +    V++  +  + +L  +   ++  CL M+ ++F+PP        
Sbjct: 107 EQLISIILRLPWLNRSQTVVEEYLAFLGNLVSAQTVFLRPCLSMIASHFVPPRVIIKEGD 166

Query: 145 MDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYV 204
           +D+                 H AL+ I+  VP  P  L   +V K   V  +E     YV
Sbjct: 167 VDVSDSDDEDDNLPANFDTCHRALQIIARYVPSTPWFLMPILVEKFPFVRKSERTLECYV 226

Query: 205 ENMLRLEKGALSEFVGRKILTALVDKLLDLDVEI---GWDDILQ--------DDFSKGIF 264
            N+LR+        +  +IL  +++KLL LDV     G +D  +         D ++G+F
Sbjct: 227 HNLLRI--SVYFPTLRHEILELIIEKLLKLDVNASRQGIEDAEETATQTCGGTDSTEGLF 286

Query: 265 EMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES-CERDGRL 324
            M   D+D+ T+    ++   P  L +     + +AE LD L+ L   +++  C  DG++
Sbjct: 287 NM---DEDEETE---HETKAGPERLDQMV---HPVAERLDILMSLVLSYMKDVCYVDGKV 346

Query: 325 N-----EVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVSCN 384
           +     +++  L+  F + +L  + S   QF +FY CS       A F   L       +
Sbjct: 347 DNGKTKDLYRDLINIFDKLLLPTHASCHVQFFMFYLCSFKLGFAEA-FLEHLWKKLQDPS 406

Query: 385 DPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKA------ 444
           +P +IR +A +Y+ SFL+R KF+    V + L  LV+W   Y    N D   KA      
Sbjct: 407 NPAIIRQAAGNYIGSFLARAKFIPLITVKSCLDLLVNWLHIY--LNNQDSGTKAFCDVAL 466

Query: 445 HKVFYSGCQAIMYVLCFRMRSIL--EIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEE 504
           H  FYS CQA+ Y   FR + +L   +      L  +    ++  +L+PLK+CLPS+V  
Sbjct: 467 HGPFYSACQAVFYTFVFRHKQLLSGNLKEGLQYLQSLNFERIVMSQLNPLKICLPSVVNF 526

Query: 505 FLRQAKVANLFTPSENFIFNGLLESDYSRSFGG-------LERLDMFFPFDPCLLKKCDR 553
           F        L         N        RS  G          LD FFPFDPC+LK+  +
Sbjct: 527 FAAITNKYQLVFCYTIIERNNRQMLPVIRSTAGGDSVQICTNPLDTFFPFDPCVLKRSKK 586

[Close]

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot
Match: Q10110 (RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrn3 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.8e-29
Identity = 153/577 (26.52%), Postives = 259/577 (44.89%), Query Frame = 0


Query: 17  DVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHR-DRLSPDEVALLVTCLKALSGA 76
           D  L    L  F+   L   + G+  GY  L      + D         L   L AL+  
Sbjct: 46  DGRLMQQMLRAFVNKALDDKAEGNFAGYEDLRRQFAAKSDTKDAPSSLQLQNLLSALTCN 105

Query: 77  VSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMP 136
           VS +D   + SL+ ++          + +      + +L  +   Y+   + ML+ +   
Sbjct: 106 VSRLD-SSNSSLVMSVLDSVWVSRDESFVRCYTRFLGNLISAQSNYLPLVMTMLIQH--- 165

Query: 137 PNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLT 196
                 +L +P  L    E     H ALK + +LVP A   L   ++ +    + +ESL 
Sbjct: 166 ------MLYRPDSLAIHYE---HAHMALKYVLELVPRAHSFLYSSILEEFP--YKDESLL 225

Query: 197 T--IYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELE 256
               Y+ N+L + +   S  +   +L A++DK++ +DVEI  +  + DD  +   E E+ 
Sbjct: 226 AQMTYISNVLSICEYVPS--IKGPVLHAIIDKIIQIDVEIQVE--VDDDDEE---EDEVV 285

Query: 257 DDDDTTDDINED--------------SSELPRE--LSRRSL-GGNVIAETLDSLIVLTFE 316
            DDD T + + +              SSE+     L+  SL     + + LD L+   F 
Sbjct: 286 TDDDGTSNADSEVITASTLYERHTAISSEMTSSTILTPPSLTDTRQLMQQLDQLLYTLFS 345

Query: 317 HLE----SCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAI 376
           +L+    S  RD  L  V++ L+ SF  TVL  ++ ++ QF++F+A  LDPE       +
Sbjct: 346 YLDSNLKSTSRDRYL--VYNSLIKSFVNTVLKTFRCRYTQFLIFWASQLDPEFTDIFLGV 405

Query: 377 SLADMFVSCNDPPLIRMSAVSYLASFLSRGKFL---TTSLVTTILKRLVDWCLEYGKTLN 436
            L ++ +  + P  +R+S   Y+ S+++R K L   T  ++  ++ R V+  L+  +   
Sbjct: 406 -LTEVCLDPSQPYTLRLSGAMYIGSYVARAKALEKNTIQIIVNMMTRWVEAYLDQCENEL 465

Query: 437 VDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLL--------LMPIGPLLTHRL 496
            D     H VFY+  Q+I Y+ CFR R +      +S           L  +   +  RL
Sbjct: 466 SDDLLSKHSVFYAINQSIFYIFCFRWRELCVSDESESMEPRPNEWIPGLEILHRSVLSRL 525

Query: 497 SPLKVCLPSIVEEFLRQAKVANLFTPSENFIF-NGLLESDYSRSF-GGLERLDMFFPFDP 556
           +PL+ C P+IV +F   AKVAN      NF++   ++E +    F  G + +D +FPFDP
Sbjct: 526 NPLRYCSPNIVLQF---AKVANHL----NFMYVYSIIEQNRKGIFREGFDTMDAYFPFDP 585

[Close]

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot
Match: P36070 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRN3 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-16
Identity = 101/420 (24.05%), Postives = 180/420 (42.86%), Query Frame = 0


Query: 198 YVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWD-DILQDDF-SKGIFEMELEDD 257
           Y  N+L+L +G  SE +G +I + L++K++ +DVE+  + D L DD     + E++LEDD
Sbjct: 211 YTSNLLKL-RGYCSE-LGFQIWSLLIEKIISIDVELQNELDELDDDVDDDDLEEVDLEDD 270

Query: 258 DDTTDDINEDSSE----LPRELSRRSLGGN----------------------------VI 317
           DD  DD  +D  E       EL   +  G+                             +
Sbjct: 271 DDLDDDSGDDDDENCGNSNEELRSGAADGSQSDSEDMDIIEGMDGTEEYNVELTQGIKEL 330

Query: 318 AETLDSLIVLTFEHLESCERDGRLNE-----VFDILLLSFQRTVLTAYKSKFAQFIVFYA 377
           +  LDS++ L   H+E       L       VF+ L   F+  VL  Y ++  Q+I+F+ 
Sbjct: 331 STKLDSILTLVSTHVEEQVTPESLESGEGVGVFNTLTTLFKTHVLPTYYTRSIQYIMFHV 390

Query: 378 CSLDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLV 437
                E+  + F ++L D+  + N+    ++ ++ YL S+++R K L+ + +  +   L 
Sbjct: 391 SQQQLELMDS-FLVTLIDISFAVNEAAEKKIKSLQYLGSYIARAKKLSRTQIIFVASYLT 450

Query: 438 DW----CLEYGKTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG 497
            W     +E  + ++     +  K FY+  QA+ Y+ CFR     +        L     
Sbjct: 451 SWLNRYVIEREEEVDQRGGMERFKHFYAAFQALCYIFCFRHNIFRDTDGNWECELDKFFQ 510

Query: 498 PLLTHRLSPLKVCLPSIVEEFLR---QAKVANLFTPSENFI------FNGLLESD----- 551
            ++  + +PLK C  +++  F R   Q  VA  F+  EN          G  +SD     
Sbjct: 511 RMVISKFNPLKFCNENVMLMFARIAQQESVAYCFSIIENNNNERLRGIIGKADSDKKENS 570

[Close]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL
Match: A0A0A0L7G6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1)

HSP 1 Score: 1223.0 bits (3163), Expect = 0.0e+00
Identity = 625/626 (99.84%), Postives = 625/626 (99.84%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF
Sbjct: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYD-EEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP 600
           PTYD EEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP
Sbjct: 541 PTYDEEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP 600

Query: 601 RNSLQYRCDFVQMPSRIRPSMSPEFF 626
           RNSLQYRCDFVQMPSRIRPSMSPEFF
Sbjct: 601 RNSLQYRCDFVQMPSRIRPSMSPEFF 626

[Close]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL
Match: A0A1S3AV30 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo OX=3656 GN=LOC103483270 PE=3 SV=1)

HSP 1 Score: 1168.7 bits (3022), Expect = 0.0e+00
Identity = 593/623 (95.18%), Postives = 609/623 (97.75%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDII HESLLAAIFKMSLWDYG NVMD+LIELIISLAVSNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAIFKMSLWDYGPNVMDSLIELIISLAVSNGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YV+SCLDMLVNNFMPPNSYMD LKKPHGLT+K+EVLSRVHTALKDISDLVPLAPLRLEQ 
Sbjct: 121 YVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDISDLVPLAPLRLEQI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDD+TTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYACSLDPEVCGARFA+SLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVCGARFAVSLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYG+TLNVDPNPKAHKVF
Sbjct: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGETLNVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL+QAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLQQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSE FIFNGLLES+YSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITPR 600
           PTY EEEE+E+DGGSSDEDAE+FPD I+ENLMDD AMA SYDDQDFDLDSGLN MSITPR
Sbjct: 541 PTYAEEEEQEEDGGSSDEDAEVFPDIIEENLMDDVAMARSYDDQDFDLDSGLNNMSITPR 600

Query: 601 NSLQYRCDFVQMPSRIRPSMSPE 624
           NSLQYR DFV+MPSRIRPSMSPE
Sbjct: 601 NSLQYRHDFVKMPSRIRPSMSPE 623

[Close]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL
Match: A0A5D3D051 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G004710 PE=3 SV=1)

HSP 1 Score: 1168.7 bits (3022), Expect = 0.0e+00
Identity = 593/623 (95.18%), Postives = 609/623 (97.75%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDII HESLLAAIFKMSLWDYG NVMD+LIELIISLAVSNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAIFKMSLWDYGPNVMDSLIELIISLAVSNGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YV+SCLDMLVNNFMPPNSYMD LKKPHGLT+K+EVLSRVHTALKDISDLVPLAPLRLEQ 
Sbjct: 121 YVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDISDLVPLAPLRLEQI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDD+TTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYACSLDPEVCGARFA+SLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVCGARFAVSLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYG+TLNVDPNPKAHKVF
Sbjct: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGETLNVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL+QAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLQQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSE FIFNGLLES+YSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITPR 600
           PTY EEEE+E+DGGSSDEDAE+FPD I+ENLMDD AMA SYDDQDFDLDSGLN MSITPR
Sbjct: 541 PTYAEEEEQEEDGGSSDEDAEVFPDIIEENLMDDVAMARSYDDQDFDLDSGLNNMSITPR 600

Query: 601 NSLQYRCDFVQMPSRIRPSMSPE 624
           NSLQYR DFV+MPSRIRPSMSPE
Sbjct: 601 NSLQYRHDFVKMPSRIRPSMSPE 623

[Close]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL
Match: A0A5A7U3Y2 (RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G001870 PE=3 SV=1)

HSP 1 Score: 1155.6 bits (2988), Expect = 0.0e+00
Identity = 593/646 (91.80%), Postives = 609/646 (94.27%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAA-----------------------IFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLS 180
           DYG NVMD+LIELIISLAVSNGKYV+SCLDMLVNNFMPPNSYMD LKKPHGLT+K+EVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQ VVHKMQRVFF ESLTTIYVENMLRLEKGALSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDD+TTDDINEDSSELPRELSRRS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACSLDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420
           ACSLDPEVCGARFA+SLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480
           VDWCLEYG+TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLFTPSE FIFNGLLES+YSRSFGGLERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAM 600
           DPCLLKKCDRYLRPHFVYWSMVRPTY EEEE+E+DGGSSDEDAE+FPD I+ENLMDD AM
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDEDAEVFPDIIEENLMDDVAM 600

Query: 601 AISYDDQDFDLDSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 624
           A SYDDQDFDLDSGLN MSITPRNSLQYR DFV+MPSRIRPSMSPE
Sbjct: 601 ARSYDDQDFDLDSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPE 646

[Close]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL
Match: A0A6J1F0A3 (RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438313 PE=3 SV=1)

HSP 1 Score: 1066.2 bits (2756), Expect = 5.1e-308
Identity = 544/627 (86.76%), Postives = 589/627 (93.94%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MG ELEN QAQ   ME VN TD QLVDFIRGFL+SVSLG+ DGY+QLVGVIHHR RLS D
Sbjct: 1   MGVELENGQAQFQDMEGVNFTDDQLVDFIRGFLTSVSLGNTDGYHQLVGVIHHRGRLSAD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCID++LHESLLAAIFKMSLWDYG NVMDALIELI SLAVS+GK
Sbjct: 61  EVALLVTCLKALSGAVSCIDVVLHESLLAAIFKMSLWDYGPNVMDALIELITSLAVSSGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YVDSCLDMLV NFMPP+SY D LKKPHGLTRK+EVLSRVHTALKDISDLVPLAPLRLE  
Sbjct: 121 YVDSCLDMLVTNFMPPHSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLELI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFE+ELEDD+++TDDI+EDSSELPRELSR+SLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEIELEDDNESTDDIDEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRL+EVFDILLLSFQRTVLTAYKSKFAQF++FYAC+LDPEVCGARFA++LADMFVS
Sbjct: 301 CERDGRLSEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGARFAVTLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CN  PL RMSA+SYLAS+LSRGKFL+TSLVTTILKRLVDWCLEYGKT +VD NPKAHK+F
Sbjct: 361 CNGLPLTRMSAISYLASYLSRGKFLSTSLVTTILKRLVDWCLEYGKTHDVDLNPKAHKIF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIG +LTHRLSPLKVCLPSIVEEFLRQAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGRILTHRLSPLKVCLPSIVEEFLRQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSE FIFNGLLES+YS++FGG+ERLDMFFP+DPCLLK+CDRYLRP+FVYWSMVR
Sbjct: 481 VANLFTPSETFIFNGLLESEYSKTFGGIERLDMFFPYDPCLLKRCDRYLRPYFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDED-AEIFPDRIDENLMDDEAMAISYDDQDFDL---DSGLNKMS 600
           PTYDEEEE+E   GSSDED AE+FPD+I+ENLMDDEAMA SYD+++FDL   D+ L+KMS
Sbjct: 541 PTYDEEEEDE---GSSDEDVAEVFPDKIEENLMDDEAMATSYDNREFDLDEFDNALDKMS 600

Query: 601 ITPRNSLQYRCDFVQMPSRIRPSMSPE 624
           ITPRNSL +R D V+MPSRIRPSMSPE
Sbjct: 601 ITPRNSLPFRQDCVRMPSRIRPSMSPE 624

[Close]

BLAST of CSPI03G08750 vs. NCBI nr
Match: XP_004133864.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus] >XP_011650750.1 RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus])

HSP 1 Score: 1223.0 bits (3163), Expect = 0.0e+00
Identity = 625/626 (99.84%), Postives = 625/626 (99.84%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK
Sbjct: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF
Sbjct: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYD-EEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP 600
           PTYD EEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP
Sbjct: 541 PTYDEEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITP 600

Query: 601 RNSLQYRCDFVQMPSRIRPSMSPEFF 626
           RNSLQYRCDFVQMPSRIRPSMSPEFF
Sbjct: 601 RNSLQYRCDFVQMPSRIRPSMSPEFF 626

[Close]

BLAST of CSPI03G08750 vs. NCBI nr
Match: XP_008438040.1 (PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438041.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >XP_008438044.1 PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo] >TYK17601.1 RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1168.7 bits (3022), Expect = 0.0e+00
Identity = 593/623 (95.18%), Postives = 609/623 (97.75%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDII HESLLAAIFKMSLWDYG NVMD+LIELIISLAVSNGK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAIFKMSLWDYGPNVMDSLIELIISLAVSNGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YV+SCLDMLVNNFMPPNSYMD LKKPHGLT+K+EVLSRVHTALKDISDLVPLAPLRLEQ 
Sbjct: 121 YVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLSRVHTALKDISDLVPLAPLRLEQI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDD+TTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYACSLDPEVCGARFA+SLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACSLDPEVCGARFAVSLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYG+TLNVDPNPKAHKVF
Sbjct: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGETLNVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFL+QAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLQQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSE FIFNGLLES+YSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITPR 600
           PTY EEEE+E+DGGSSDEDAE+FPD I+ENLMDD AMA SYDDQDFDLDSGLN MSITPR
Sbjct: 541 PTYAEEEEQEEDGGSSDEDAEVFPDIIEENLMDDVAMARSYDDQDFDLDSGLNNMSITPR 600

Query: 601 NSLQYRCDFVQMPSRIRPSMSPE 624
           NSLQYR DFV+MPSRIRPSMSPE
Sbjct: 601 NSLQYRHDFVKMPSRIRPSMSPE 623

[Close]

BLAST of CSPI03G08750 vs. NCBI nr
Match: KAA0048966.1 (RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var. makuwa])

HSP 1 Score: 1155.6 bits (2988), Expect = 0.0e+00
Identity = 593/646 (91.80%), Postives = 609/646 (94.27%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAELENNQAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQLVGVIHHRDRLSPD
Sbjct: 1   MGAELENNQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDTDGYNQLVGVIHHRDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAA-----------------------IFKMSLW 120
           EVALLVTCLKALSGAVSCIDII HESLLAA                       IFKMSLW
Sbjct: 61  EVALLVTCLKALSGAVSCIDIIQHESLLAAVSLCLNSESLSCNFVVVMEVLSQIFKMSLW 120

Query: 121 DYGSNVMDALIELIISLAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLS 180
           DYG NVMD+LIELIISLAVSNGKYV+SCLDMLVNNFMPPNSYMD LKKPHGLT+K+EVLS
Sbjct: 121 DYGPNVMDSLIELIISLAVSNGKYVNSCLDMLVNNFMPPNSYMDFLKKPHGLTKKDEVLS 180

Query: 181 RVHTALKDISDLVPLAPLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRK 240
           RVHTALKDISDLVPLAPLRLEQ VVHKMQRVFF ESLTTIYVENMLRLEKGALSEFVGRK
Sbjct: 181 RVHTALKDISDLVPLAPLRLEQIVVHKMQRVFFKESLTTIYVENMLRLEKGALSEFVGRK 240

Query: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRS 300
           ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDD+TTDDINEDSSELPRELSRRS
Sbjct: 241 ILTALVDKLLDLDVEIGWDDILQDDFSKGIFEMELEDDDETTDDINEDSSELPRELSRRS 300

Query: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFY 360
           LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FY
Sbjct: 301 LGGNVIAETLDSLIVLTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFY 360

Query: 361 ACSLDPEVCGARFAISLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420
           ACSLDPEVCGARFA+SLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL
Sbjct: 361 ACSLDPEVCGARFAVSLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRL 420

Query: 421 VDWCLEYGKTLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480
           VDWCLEYG+TLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL
Sbjct: 421 VDWCLEYGETLNVDPNPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLL 480

Query: 481 THRLSPLKVCLPSIVEEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPF 540
           THRLSPLKVCLPSIVEEFL+QAKVANLFTPSE FIFNGLLES+YSRSFGGLERLDMFFPF
Sbjct: 481 THRLSPLKVCLPSIVEEFLQQAKVANLFTPSETFIFNGLLESEYSRSFGGLERLDMFFPF 540

Query: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAM 600
           DPCLLKKCDRYLRPHFVYWSMVRPTY EEEE+E+DGGSSDEDAE+FPD I+ENLMDD AM
Sbjct: 541 DPCLLKKCDRYLRPHFVYWSMVRPTYAEEEEQEEDGGSSDEDAEVFPDIIEENLMDDVAM 600

Query: 601 AISYDDQDFDLDSGLNKMSITPRNSLQYRCDFVQMPSRIRPSMSPE 624
           A SYDDQDFDLDSGLN MSITPRNSLQYR DFV+MPSRIRPSMSPE
Sbjct: 601 ARSYDDQDFDLDSGLNNMSITPRNSLQYRHDFVKMPSRIRPSMSPE 646

[Close]

BLAST of CSPI03G08750 vs. NCBI nr
Match: XP_038896673.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1125.2 bits (2909), Expect = 0.0e+00
Identity = 574/629 (91.26%), Postives = 599/629 (95.23%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MGAE EN QAQLH MEDVNLTDAQLVDFIRGFLSSVSLGD DGYNQL+GVIHH+DRLSPD
Sbjct: 1   MGAEFENGQAQLHDMEDVNLTDAQLVDFIRGFLSSVSLGDNDGYNQLIGVIHHKDRLSPD 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           E+ALLVTCLKALSGAVSCIDIILHESLL+AIFKMSLWDYG NVMDALIELIISLAVS+G 
Sbjct: 61  EIALLVTCLKALSGAVSCIDIILHESLLSAIFKMSLWDYGPNVMDALIELIISLAVSSGN 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YVDSCLDMLVNNFMPP SY D LKKPHGLTRK+EVLSRVHTALKDISDLVPLAPLRLEQ 
Sbjct: 121 YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDISDLVPLAPLRLEQI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVENMLRLEKGA+SEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVENMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMELEDDD+T DD NEDSSELPRELSR+SLGGNVIAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELEDDDETADDSNEDSSELPRELSRKSLGGNVIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQF++FYAC+L PEVCG RFA+SLADMFVS
Sbjct: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFVIFYACALYPEVCGERFAVSLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPL RMSAVSYLAS+LSRGKFL+TSLVT+ILKRLVDWCLEYGKTL+V+PNPKAHKVF
Sbjct: 361 CNDPPLTRMSAVSYLASYLSRGKFLSTSLVTSILKRLVDWCLEYGKTLDVEPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGP+LTHRLSPLKVCLPSIVEEFLRQAK
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPVLTHRLSPLKVCLPSIVEEFLRQAK 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLFTPSE ++FNGLLESDYSR+FGG+ERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR
Sbjct: 481 VANLFTPSETYVFNGLLESDYSRTFGGIERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDED-AEIFPDRIDENLMDDEAMAISYDDQDFDL---DSGLNKMS 600
           PTYD   EEE DGGSSDED AE+FPDRI+ENLMDDEAMA SYDDQDFDL   DS LN MS
Sbjct: 541 PTYD---EEEGDGGSSDEDVAEVFPDRIEENLMDDEAMARSYDDQDFDLDEFDSALNNMS 600

Query: 601 ITPRNSLQYRCDFVQMPSRIRPSMSPEFF 626
           ITPRNSLQYR DFVQMPSRIRPSMSPE F
Sbjct: 601 ITPRNSLQYRRDFVQMPSRIRPSMSPESF 626

[Close]

BLAST of CSPI03G08750 vs. NCBI nr
Match: XP_038901148.1 (RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa hispida])

HSP 1 Score: 1090.9 bits (2820), Expect = 0.0e+00
Identity = 555/627 (88.52%), Postives = 592/627 (94.42%), Query Frame = 0


Query: 1   MGAELENNQAQLHAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPD 60
           MG ELE  QAQLH ME VNLTDAQLVDF+RGFLSSVSLGD DGYNQLVGVIHH+DRL+P+
Sbjct: 1   MGVELEKGQAQLHDMEGVNLTDAQLVDFVRGFLSSVSLGDNDGYNQLVGVIHHKDRLTPE 60

Query: 61  EVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGK 120
           EVALLVTCLKALSGAVSCIDI+LHESLLAAIFK SLWDYG NVMDALIELIISLAVS+GK
Sbjct: 61  EVALLVTCLKALSGAVSCIDIVLHESLLAAIFKRSLWDYGRNVMDALIELIISLAVSSGK 120

Query: 121 YVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQK 180
           YVDSCLDMLVNNFMPP SY D LKKPHGLTRK+EVLSRVHTALKDI DLVPLAPLRLEQ 
Sbjct: 121 YVDSCLDMLVNNFMPPYSYKDFLKKPHGLTRKDEVLSRVHTALKDILDLVPLAPLRLEQI 180

Query: 181 VVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240
           VVHKMQRVFF ESLTTIYVE+MLRLEKGA+SEFVGRKILTALVDKLLDLDVEIGWDDILQ
Sbjct: 181 VVHKMQRVFFKESLTTIYVESMLRLEKGAMSEFVGRKILTALVDKLLDLDVEIGWDDILQ 240

Query: 241 DDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLES 300
           DDFSKGIFEMEL DDD+TT+DINE SSELPRELSR+SLGGN+IAETLDSLIVLTFEHLES
Sbjct: 241 DDFSKGIFEMELADDDETTEDINEASSELPRELSRKSLGGNIIAETLDSLIVLTFEHLES 300

Query: 301 CERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVS 360
           CERDGRLNEVFD+LLLSFQRTVLTAYKSKFAQF++FYAC+LDPEVCGARFA+ LADMFVS
Sbjct: 301 CERDGRLNEVFDVLLLSFQRTVLTAYKSKFAQFVIFYACALDPEVCGARFAVWLADMFVS 360

Query: 361 CNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVF 420
           CNDPPL RM AVSYLAS+LSRGKFL+TSLVT ILKRLVDWCLEYGKTL+VDPNPKAHKVF
Sbjct: 361 CNDPPLTRMKAVSYLASYLSRGKFLSTSLVTIILKRLVDWCLEYGKTLDVDPNPKAHKVF 420

Query: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAK 480
           YSGCQAIMYVLCFRMRSILEIPRLKSQLLL+PIGP+LTHRLSPLKVCLPSIVEEFLRQA+
Sbjct: 421 YSGCQAIMYVLCFRMRSILEIPRLKSQLLLIPIGPVLTHRLSPLKVCLPSIVEEFLRQAE 480

Query: 481 VANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVR 540
           VANLF+PSE FIFNGLLES+YS++FGG+ERLDMFFPFDPCLLK CDRYLRPHFVYWSMVR
Sbjct: 481 VANLFSPSETFIFNGLLESEYSQTFGGIERLDMFFPFDPCLLKTCDRYLRPHFVYWSMVR 540

Query: 541 PTYDEEEEEEDDGGSSDED-AEIFPDRIDENLMDDEAMAISYDDQDFDL---DSGLNKMS 600
           PTYDEEE     GGSSDED AE+FPDRI+ENLMDDEA+A SYDD+DFDL   DS LN+MS
Sbjct: 541 PTYDEEEY----GGSSDEDVAEVFPDRIEENLMDDEAVARSYDDRDFDLDEFDSALNEMS 600

Query: 601 ITPRNSLQYRCDFVQMPSRIRPSMSPE 624
           ITPRNSLQYR DFVQMP +IRP++SPE
Sbjct: 601 ITPRNSLQYRRDFVQMPLQIRPTISPE 623

[Close]

BLAST of CSPI03G08750 vs. TAIR 10
Match: AT2G34750.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 595.9 bits (1535), Expect = 3.8e-170
Identity = 324/634 (51.10%), Postives = 446/634 (70.35%), Query Frame = 0


Query: 1   MGA-ELENNQAQLHAME----DVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHH-- 60
           MGA EL ++ + L  +E    +V+L+D QLV  +R  L+SV  GD D Y+++VGV+    
Sbjct: 1   MGAVELMSDPSSLCTVENYVDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDI 60

Query: 61  RDRLSPDEVALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIIS 120
           ++   PD VA L T LKALSGAV+CID++ H+ LL+A+F+M LWD+  +VMDAL+ L+IS
Sbjct: 61  KEFKDPDVVAQLETVLKALSGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVIS 120

Query: 121 LAVSNGKYVDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLA 180
           LAV++GKY+DSCL+MLV+NF+PP   ++ L     L +K +VLSRVH AL  IS LVPL 
Sbjct: 121 LAVTSGKYLDSCLNMLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLT 180

Query: 181 PLRLEQKVVHKMQRVFFNESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEI 240
           P RL   +  +M ++   +    IYVE++L+LE  ++ +  G  IL  ++++L DLD+EI
Sbjct: 181 PSRLVPMLFQQMPKMHKKDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEI 240

Query: 241 GWDDILQDDFSKGIFEMELEDDDDTTDDINEDSSELP-RELSRRSLGGNVIAETLDSLIV 300
            WDDI QDD S+G+F+MELED  + T     D  ELP   L + +  G+++++ LD L+V
Sbjct: 241 EWDDIPQDDSSRGMFDMELEDAAEGT---MNDGDELPVGPLKQDTSDGSIVSKLLDKLMV 300

Query: 301 LTFEHLESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAI 360
           + FEHLESC+ DGRL++VF+ L  SF+  +L  YKSKF QF++FYACSLDPE CG +FA 
Sbjct: 301 VAFEHLESCQNDGRLDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFAS 360

Query: 361 SLADMFVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDP 420
            L ++F+S N     RMSAV+YLASFL+RGKFL  S V ++LKRL+D C+ Y +T N D 
Sbjct: 361 KLVEIFLSSNKHVATRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDT 420

Query: 421 NPKAHKVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIV 480
            P+AH++F+SGCQAIMYVLCFRMRSIL++PR +SQ  L P+  +L H+L+PL VCLPS+V
Sbjct: 421 RPEAHQIFFSGCQAIMYVLCFRMRSILDVPRFRSQ--LTPLESILMHKLNPLMVCLPSVV 480

Query: 481 EEFLRQAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPH 540
            EFLRQAK   LF  S++FIF+ LLES+ SR+FGG ERLD FFPFDPCLLK  + ++ P+
Sbjct: 481 AEFLRQAKEGGLFIVSDSFIFDDLLESELSRAFGGFERLDTFFPFDPCLLKSSNSFISPN 540

Query: 541 FVYWSMVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGL 600
           F+YWSMV+ TYDE+++        D DAE+  +  +++  DDEA          DLD  L
Sbjct: 541 FIYWSMVKATYDEDDD--------DNDAEVIVNGDEDSDEDDEA----------DLDYAL 600

Query: 601 NKMSITPRNSLQYRCD---FVQMPSRIRPSMSPE 624
           NKMSITP++S + + +    ++MPSRIRPS SPE
Sbjct: 601 NKMSITPKHSFKNKMERDRLLRMPSRIRPSTSPE 611

[Close]

BLAST of CSPI03G08750 vs. TAIR 10
Match: AT1G30590.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 522.3 bits (1344), Expect = 5.3e-148
Identity = 297/613 (48.45%), Postives = 403/613 (65.74%), Query Frame = 0


Query: 13  HAMEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPDEVALLVTCLKAL 72
           +AM++   TD  LV  +R  L+SV  GD D Y+QL  V+   +    D VA L T LK+L
Sbjct: 14  NAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADFDAVAQLETVLKSL 73

Query: 73  SGAVSCIDIILHESLLAAIFKMSLW--DYGSNVMDALIELIISLAVSNGKYVDSCLDMLV 132
           S +V+ ID++ H+ LL A   MSLW   +  +VMDAL++LIISLA ++GKY+D CL+MLV
Sbjct: 74  SVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLIISLAATSGKYLDPCLNMLV 133

Query: 133 NNFMPPNSYMDLLKKPHGLTRKEEVLSRVHTALKDISDLVPLAPLRLEQKVVHKMQRVFF 192
            NF  P ++   + +   + + +EV  RVH AL  IS L+PLAP  L   +   M+++  
Sbjct: 134 RNFSQP-TFKHKVSQTQLVKKMQEVHPRVHAALHKISYLIPLAPWNLVSILAQNMRKIDK 193

Query: 193 NESLTTIYVENMLRLEKGALSEFVGRKILTALVDKLLDLDVEIGWDDILQDDFSKGIFEM 252
            +     YV+N+LRLE  ++ E VG  IL  +++++LDLD+  G      DD + G+F+M
Sbjct: 194 KDPSIVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLVSGC-----DDSNGGMFDM 253

Query: 253 ELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEHLESCERDGRLNEV 312
           ELED  ++T  +NE        L + + GGNV++E LD L+VL F HLESC+   RL+EV
Sbjct: 254 ELEDAVEST--MNEGDEFPVGALKQNTSGGNVVSELLDKLMVLFFHHLESCQNSDRLDEV 313

Query: 313 FDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADMFVSCNDPPLIRMS 372
           F+IL  SF+  +L  YK+KF+QF++FYACSLDPE CG RFA  L D+++S N   L RMS
Sbjct: 314 FEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFASKLLDIYLSSNTCRLTRMS 373

Query: 373 AVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAHKVFYSGCQAIMYV 432
           AV+YLAS+LSRGKFL  S V ++LKRLVD C EY  T N D  P+AH+VFYSGCQAI+YV
Sbjct: 374 AVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDVKPEAHQVFYSGCQAILYV 433

Query: 433 LCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLRQAKVANLFTPSEN 492
           LCFRMRSI+EIPR +SQ     +  +L+H+L+PL VCLPS+V EFL+QAK   LF  SE+
Sbjct: 434 LCFRMRSIVEIPRFQSQ--FRSLESILSHKLNPLLVCLPSVVSEFLKQAKAGGLFIVSES 493

Query: 493 FIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWSMVRPTYDEEEEEE 552
           FIF+ L ES+ SR+FGG ERLD FFPFDPCLLK    Y+ P+F +WSMV+ TY E+ +EE
Sbjct: 494 FIFDDLHESELSRAFGGFERLDTFFPFDPCLLKMSSSYISPNFNFWSMVKTTYGEDGDEE 553

Query: 553 DDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSITPRNSLQYRCD-F 612
                            DE +++ +A +    D D +LDS +N MS TP++S     +  
Sbjct: 554 ---------------LCDEVIVNGDADSAEEPDDDVELDSEMNTMSTTPKHSFMRETERL 598

Query: 613 VQMPSRIRPSMSP 623
           ++MPSRIRPS SP
Sbjct: 614 LKMPSRIRPSTSP 598

[Close]

BLAST of CSPI03G08750 vs. TAIR 10
Match: AT2G39240.1 (RNA polymerase I specific transcription initiation factor RRN3 protein )

HSP 1 Score: 426.8 bits (1096), Expect = 3.0e-119
Identity = 265/626 (42.33%), Postives = 372/626 (59.42%), Query Frame = 0


Query: 15  MEDVNLTDAQLVDFIRGFLSSVSLGDIDGYNQLVGVIHHRDRLSPDE------------- 74
           +E  +L+D  LV  IR  L+S   GD D YN+LV +++ + + S D+             
Sbjct: 6   VETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMYIKKKKSGDDAMAQPEVPDDVDV 65

Query: 75  VALLVTCLKALSGAVSCIDIILHESLLAAIFKMSLWDYGSNVMDALIELIISLAVSNGKY 134
           VA   T LK LS +V+C+D + H  LL  I    +WD+  NV+ AL++LIISLA ++GK+
Sbjct: 66  VAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLATTSGKH 125

Query: 135 VDSCLDMLVNNFMPPNSYMDLLKKPHGLTRKE-EVLSRVHTALKDISDLVPLAPLRLEQK 194
           + SCLD LV+N         L  +P  L  K  EVLSRVH AL  IS LVPLAP  L   
Sbjct: 126 LSSCLDTLVSN---------LRSQPRKLDNKMLEVLSRVHAALHKISYLVPLAPSILLPI 185

Query: 195 VVHKMQRVFFNESLTTI--YVENMLRLEKGA-LSEFVGRKILTALVDKLLDLDVEIGWDD 254
           +   M  V     L  +  YV+N+L+LE  + + + VG+ IL  ++ +  DLD EI  DD
Sbjct: 186 LAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSEIECDD 245

Query: 255 ILQDDFSKGIFEMELEDDDDTTDDINEDSSELPRELSRRSLGGNVIAETLDSLIVLTFEH 314
            LQ+D S  +F+MEL+                       ++ G ++++ LD L+V +F H
Sbjct: 246 NLQNDSSLAMFDMELD----------------------VAVEGTLVSKLLDDLMVESFNH 305

Query: 315 LESCERDGRLNEVFDILLLSFQRTVLTAYKSKFAQFIVFYACSLDPEVCGARFAISLADM 374
           L+SC+  GRL+EVF+ L  SF+  +L   K KF+QF++FYACSLDPE CG +FA  L + 
Sbjct: 306 LKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFASKLLEK 365

Query: 375 FVSCNDPPLIRMSAVSYLASFLSRGKFLTTSLVTTILKRLVDWCLEYGKTLNVDPNPKAH 434
           F+S N+  + R +AV+YLAS+L+R  FL+ S V ++LKRLVD C +Y +T N D  P+ H
Sbjct: 366 FLSSNNNQVTRTNAVTYLASYLARANFLSASFVASMLKRLVDECADYCRTCNDDARPEVH 425

Query: 435 KVFYSGCQAIMYVLCFRMRSILEIPRLKSQLLLMPIGPLLTHRLSPLKVCLPSIVEEFLR 494
           +VFYSGCQAI+YVLCFRMRSILE+P  +SQ  L P+  +L+H+L PL+VCL S+V EFL 
Sbjct: 426 QVFYSGCQAILYVLCFRMRSILEVPHFQSQ--LTPLESVLSHKLDPLRVCLSSVVSEFLI 485

Query: 495 QAKVANLFTPSENFIFNGLLESDYSRSFGGLERLDMFFPFDPCLLKKCDRYLRPHFVYWS 554
           QAK   LF  S+ FIF+ L ES+ SR+ GG      FFPF P LL+K +  + PHF+  S
Sbjct: 486 QAKACGLFIVSDAFIFDDLSESELSRALGG------FFPF-PWLLEKSNSLISPHFIKRS 545

Query: 555 MVRPTYDEEEEEEDDGGSSDEDAEIFPDRIDENLMDDEAMAISYDDQDFDLDSGLNKMSI 614
            V+ TY++ E        ++ED+                      D D D D+ +NKMSI
Sbjct: 546 EVKKTYEQAEVTVYGDTDNEEDS----------------------DDDVDPDNEMNKMSI 569

Query: 615 TPRNSLQYRCD-FVQMPSRIRPSMSP 623
           TP++S+ +  +  ++MPSRI PS SP
Sbjct: 606 TPKHSVMHETERLLKMPSRISPSTSP 569

The following BLAST results are available for this feature:

BLAST of CSPI03G08750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B2RS91	7.7e-35	27.05	RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus O...	[more]
Q5R4N9	5.2e-31	27.18	RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii O...	[more]
Q9NYV6	7.5e-30	26.46	RNA polymerase I-specific transcription initiation factor RRN3 OS=Homo sapiens O...	[more]
Q10110	4.8e-29	26.52	RNA polymerase I-specific transcription initiation factor rrn3 OS=Schizosaccharo...	[more]
P36070	2.1e-16	24.05	RNA polymerase I-specific transcription initiation factor RRN3 OS=Saccharomyces ...	[more]

BLAST of CSPI03G08750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7G6	0.0e+00	99.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122360 PE=3 SV=1	[more]
A0A1S3AV30	0.0e+00	95.18	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo O...	[more]
A0A5D3D051	0.0e+00	95.18	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A5A7U3Y2	0.0e+00	91.80	RNA polymerase I-specific transcription initiation factor RRN3 OS=Cucumis melo v...	[more]
A0A6J1F0A3	5.1e-308	86.76	RNA polymerase I-specific transcription initiation factor RRN3-like isoform X1 O...	[more]

BLAST of CSPI03G08750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133864.1	0.0e+00	99.84	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis sativus]...	[more]
XP_008438040.1	0.0e+00	95.18	PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 [Cucum...	[more]
KAA0048966.1	0.0e+00	91.80	RNA polymerase I-specific transcription initiation factor RRN3 [Cucumis melo var...	[more]
XP_038896673.1	0.0e+00	91.26	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]
XP_038901148.1	0.0e+00	88.52	RNA polymerase I-specific transcription initiation factor RRN3-like [Benincasa h...	[more]

BLAST of CSPI03G08750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34750.1	3.8e-170	51.10	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT1G30590.1	5.3e-148	48.45	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]
AT2G39240.1	3.0e-119	42.33	RNA polymerase I specific transcription initiation factor RRN3 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PFAM	PF05327	RRN3	coord: 20..540 e-value: 2.2E-120 score: 402.8
IPR007991	RNA polymerase I specific transcription initiation factor RRN3	PANTHER	PTHR12790	TRANSCRIPTION INITIATION FACTOR IA RRN3	coord: 6..615

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G08750.1	CSPI03G08750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006361	transcription initiation from RNA polymerase I promoter
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001042	RNA polymerase I core binding
molecular_function	GO:0001181	RNA polymerase I general transcription initiation factor activity
molecular_function	GO:0003743	translation initiation factor activity