CSPI03G07550 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G07550
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 6618744 .. 6619587 (+)
RNA-Seq Expression	CSPI03G07550
Synteny	CSPI03G07550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCTAACCCCAGATAGCTACGTCAATTGCTGATGCTAATTTCAAACTTTGATGAAATCCTACGCTTTGTATCTTGTCTACAATCACTTGCCAAATAAAATCCTTCTGTCCCTATACAGCCATCTCTCTCTCTCTCCCTCCCTCCCACTTTCTCTGTTTTTTCTTTTCTTTCTTTTTGGTTCAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGGTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGATCATTTATATACAATTTTACTTTGCCATTACAACAATTCTTCCTTTTTATTTCCTTCTCAAGTTTCTTAGGTTACAAGACTGTAAATGTTTCTCCTGAAAAAGAGTTATATATCAGATACATTTGGCTGAGCCTAATCAGAAATGTATCATAGTTGACTACGACAACTATGAGATTGAAGGCTTAAAAAAACCTTTAACTTTGGTTCAAATTTTGACTCATGTGGTTGGTTGTAATC

mRNA sequence

AAAAATCTAACCCCAGATAGCTACGTCAATTGCTGATGCTAATTTCAAACTTTGATGAAATCCTACGCTTTGTATCTTGTCTACAATCACTTGCCAAATAAAATCCTTCTGTCCCTATACAGCCATCTCTCTCTCTCTCCCTCCCTCCCACTTTCTCTGTTTTTTCTTTTCTTTCTTTTTGGTTCAGCCATTTCTAGTTCTTCTGAAGAGCTTATTAGGTGAGTTTGTAGTAATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGATCATTTATATACAATTTTACTTTGCCATTACAACAATTCTTCCTTTTTATTTCCTTCTCAAGTTTCTTAGGTTACAAGACTGTAAATGTTTCTCCTGAAAAAGAGTTATATATCAGATACATTTGGCTGAGCCTAATCAGAAATGTATCATAGTTGACTACGACAACTATGAGATTGAAGGCTTAAAAAAACCTTTAACTTTGGTTCAAATTTTGACTCATGTGGTTGGTTGTAATC

Coding sequence (CDS)

ATGGATCAAACATGGAGATTTGCAAGGGGTGGAGATGAAGAAGCTGGATTTCCAATGGAGTCAGCAATGAAAGAAGAAGATAGAGATAAGAAGAGGAATGGGAATATGAAGAGTTGTAAGATAGCAACTTGGGTGATTTCAATGGTAGTGGCATGCCTGACGGGAGGACTTGTTTTTGGTTGGTGGGTGTTTCAGTTTCATCCAACAAATAGACAACTATGGATGGTACCTTTTAGTCTTGTTTTGATGATTGCACCCATATTTGTTATGATGTCTCTTCTTATCTCTGCTTTCTGCAATTCCATGGATCAAACTACTACTTCTGCAGCTCCATCCTCAGACCATGTCATCCACCAATCTGTTCAAATTCGATGA

Protein sequence

MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQSVQIR*

Homology

[Close]

BLAST of CSPI03G07550 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.5e-62
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQS 120
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVI QS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQIR 125
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CSPI03G07550 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.7e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGTEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. ExPASy TrEMBL
Match: A0A2N9FJR8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 26  EDRDKKRNGNMKSCKIATW--VISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLM 85
           ++  K++   +K+C + +W  ++SM+     GGL F WW F++HPTN QLWMVPFSL+L+
Sbjct: 9   DESHKEQKERVKTCIVYSWSFMVSMI-----GGLAFTWWEFEYHPTNTQLWMVPFSLILL 68

Query: 86  IAPIFVMMSLLISAFCNS-MDQTTTSAAP 112
           + P+FV  S+ +S  C+S MD    ++ P
Sbjct: 69  VTPLFVWFSIFVSDLCSSKMDDVPKASQP 92

[Close]

BLAST of CSPI03G07550 vs. ExPASy TrEMBL
Match: A0A7N2MCB4 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.6e-11
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 26  EDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMIA 85
           E+   +R   +K+C + +W  S++V+ + GGL  GWW +++H TN QLWMVPF LVL+I 
Sbjct: 9   EESHGERRERVKTCIVYSW--SLLVS-MIGGLTMGWWEYEYHSTNSQLWMVPFGLVLLIT 68

Query: 86  PIFVMMSLLISAFCNSMDQTTTSAAPS 113
           P+FV  S+ +S  C+S  Q   SAA S
Sbjct: 69  PLFVWFSIFVSDLCSSKVQDAPSAAAS 92

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: KGN56384.1 (hypothetical protein Csa_011278 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 3.2e-62
Identity = 122/124 (98.39%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60
           MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG
Sbjct: 1   MDQTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFG 60

Query: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQS 120
           WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVI QS
Sbjct: 61  WWVFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIQQS 120

Query: 121 VQIR 125
           VQ R
Sbjct: 121 VQTR 124

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: KAG6582696.1 (hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 3   QTWRFARGGDEEAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWW 62
           +TW FA GG EEAG PMESAMKE         NMKSCK+ATWV+SM V  + GG+VFGWW
Sbjct: 4   KTWGFA-GGGEEAGQPMESAMKE---------NMKSCKMATWVVSMAVTSMVGGVVFGWW 63

Query: 63  VFQFHPTNRQLWMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDHVIHQSVQ 122
            F+FHPTNRQLWMVPF L+LM  P+FV+MSLLISAF +     T+     +   I +SVQ
Sbjct: 64  EFRFHPTNRQLWMVPFGLILMTTPMFVIMSLLISAFMDQPISMTSMDQNQNTTAIKKSVQ 114

Query: 123 I 124
           I
Sbjct: 124 I 114

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: KGN56386.1 (hypothetical protein Csa_010779 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGIEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: KAA0048855.1 (putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 putative permease/transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 6.1e-13
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 14  EAGFPMESAMKEEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQL 73
           + G  +E  MK E   KK+    +  K     + +V+  ++G  + GWW  +FH + +Q 
Sbjct: 2   QVGTEIEDVMKGEGEQKKQKN--RKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQ 61

Query: 74  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 116
           WMVPFSLVLMIAPIFV++S+ IS+FCNSMD+  +S   S DH
Sbjct: 62  WMVPFSLVLMIAPIFVLISVSISSFCNSMDR-ISSLVSSLDH 100

[Close]

BLAST of CSPI03G07550 vs. NCBI nr
Match: KAF3973370.1 (hypothetical protein CMV_003195 [Castanea mollissima])

HSP 1 Score: 78.6 bits (192), Expect = 4.3e-11
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 25  EEDRDKKRNGNMKSCKIATWVISMVVACLTGGLVFGWWVFQFHPTNRQLWMVPFSLVLMI 84
           +E+   +R   +KSC + +W  S++V+ + GGL+ GWW +++H TNRQLWMVPF LVL+I
Sbjct: 8   KEESHGERKERVKSCIVYSW--SLMVS-MIGGLIMGWWEYEYHRTNRQLWMVPFGLVLLI 67

Query: 85  APIFVMMSLLISAFCNSMDQTTTSAAPSSDHV 117
            P FV  S+ +S +C+S  +   S   +S  V
Sbjct: 68  TPPFVWFSIFVSDWCSSKGEDAPSTTATSQPV 96

The following BLAST results are available for this feature:

BLAST of CSPI03G07550 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G07550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5S1	1.5e-62	98.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A0A0L8F5	1.7e-13	44.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A5D3DB24	2.9e-13	44.12	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A2N9FJR8	2.7e-11	41.57	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18938 PE=4 SV=1	[more]
A0A7N2MCB4	3.6e-11	44.83	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CSPI03G07550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56384.1	3.2e-62	98.39	hypothetical protein Csa_011278 [Cucumis sativus]	[more]
KAG6582696.1	3.9e-28	59.50	hypothetical protein SDJN03_22698, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN56386.1	3.6e-13	44.12	hypothetical protein Csa_010779 [Cucumis sativus]	[more]
KAA0048855.1	6.1e-13	44.12	putative permease/transmembrane protein [Cucumis melo var. makuwa] >TYK20807.1 p...	[more]
KAF3973370.1	4.3e-11	42.39	hypothetical protein CMV_003195 [Castanea mollissima]	[more]

BLAST of CSPI03G07550 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 46..96 e-value: 5.6E-17 score: 61.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 19..116
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 19..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G07550.1	CSPI03G07550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane