CSPI03G07380 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G07380
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 6533725 .. 6533978 (-)
RNA-Seq Expression	CSPI03G07380
Synteny	CSPI03G07380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTAGTTCAATGTATTGTTTTCATGGTTGTGTATACTGTACTGTTAGTGTTGTTCTCCTTTTCTTGCCTGCATTTTAGTTGATAATTCAGTAGTGCAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

mRNA sequence

ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTATAGTGCAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

Coding sequence (CDS)

ATGGTTGGAGTCTCTAATTCCCCTCATCCTTTGTTAGACAGTATGCAGGACGAACTGAAGAAGGTTGAGCAGGATTATAGTGCAAAACTCCTTACCATCGAAGCCATCAGCGAAAGCACACCACATGGTTGTCGCCACTTGAATGATCTTCTTTCACACTTGCCGTAG

Protein sequence

MVGVSNSPHPLLDSMQDELKKVEQDYSAKLLTIEAISESTPHGCRHLNDLLSHLP*

Homology

[Close]

BLAST of CSPI03G07380 vs. ExPASy TrEMBL
Match: A0A0A0L6Z5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118020 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSAKLLTIEAISESTPHGCRHLNDLLSHLP 56
          MVGVSNSPHPLLDSMQDELKKVEQDYS KLLTIEAISESTPHGCRHLNDLLSHLP
Sbjct: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 55

[Close]

BLAST of CSPI03G07380 vs. NCBI nr
Match: KGN56367.1 (hypothetical protein Csa_009795 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0


Query: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSAKLLTIEAISESTPHGCRHLNDLLSHLP 56
          MVGVSNSPHPLLDSMQDELKKVEQDYS KLLTIEAISESTPHGCRHLNDLLSHLP
Sbjct: 1  MVGVSNSPHPLLDSMQDELKKVEQDYSEKLLTIEAISESTPHGCRHLNDLLSHLP 55

The following BLAST results are available for this feature:

BLAST of CSPI03G07380 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G07380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Z5	2.6e-22	98.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118020 PE=4 SV=1	[more]

BLAST of CSPI03G07380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56367.1	5.5e-22	98.18	hypothetical protein Csa_009795 [Cucumis sativus]	[more]

BLAST of CSPI03G07380 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 12..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G07380.1	CSPI03G07380.1	mRNA