CSPI03G06950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gag-pol fusion protein
Location	Chr3: 6200839 .. 6201165 (+)
RNA-Seq Expression	CSPI03G06950
Synteny	CSPI03G06950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

mRNA sequence

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Coding sequence (CDS)

ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCATAACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAGCTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG

Protein sequence

MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV*

Homology

[Close]

BLAST of CSPI03G06950 vs. ExPASy TrEMBL
Match: A0A0A0L6V7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.1e-54
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CSPI03G06950 vs. ExPASy TrEMBL
Match: A0A5A7VJU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00430 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 36/89 (40.45%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 14  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFV 73
           ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C             
Sbjct: 40  STPLSTFKMPKGHLIAWHPTSKYIAFNITHLAYLHGPQCIMPLSFGC----------MVA 99

Query: 74  ARPTYLPQLAKPQLSYLTMPLPPNFSSRL 103
             PT+        L  L MP  PN ++RL
Sbjct: 100 VHPTH--------LHCLIMPWLPNLATRL 110

[Close]

BLAST of CSPI03G06950 vs. ExPASy TrEMBL
Match: A0A5A7TG48 (Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G001070 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 25/42 (59.52%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 15  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP 57
           T+KS +KM  HHLVAW PN   I LN  HSA SH SQC++ P
Sbjct: 122 TTKSITKMLMHHLVAWFPNLLRIALNGSHSASSHVSQCIIPP 163

[Close]

BLAST of CSPI03G06950 vs. NCBI nr
Match: KGN56322.1 (hypothetical protein Csa_010482 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60
           MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC
Sbjct: 1   MEKLFRKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSC 60

Query: 61  GPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV 109
           GPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSSRLAHHQNV
Sbjct: 61  GPYSRALPWPHFVARPTYLPQLAKPQLPYLTMPLPPNFSSRLAHHQNV 108

[Close]

BLAST of CSPI03G06950 vs. NCBI nr
Match: KAA0068098.1 (hypothetical protein E6C27_scaffold238G00560 [Cucumis melo var. makuwa] >TYK26080.1 hypothetical protein E5676_scaffold1185G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-05
Identity = 36/89 (40.45%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 14  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFV 73
           ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C             
Sbjct: 40  STPLSTFKMPKGHLIAWHPTSKYIAFNITHLAYLHGPQCIMPLSFGC----------MVA 99

Query: 74  ARPTYLPQLAKPQLSYLTMPLPPNFSSRL 103
             PT+        L  L MP  PN ++RL
Sbjct: 100 VHPTH--------LHCLIMPWLPNLATRL 110

The following BLAST results are available for this feature:

BLAST of CSPI03G06950 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G06950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6V7	5.1e-54	98.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G115110 PE=4 SV=1	[more]
A0A5A7VJU1	3.3e-05	40.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TG48	8.2e-04	59.52	Gag-pol fusion protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]

BLAST of CSPI03G06950 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56322.1	1.1e-53	98.15	hypothetical protein Csa_010482 [Cucumis sativus]	[more]
KAA0068098.1	6.9e-05	40.45	hypothetical protein E6C27_scaffold238G00560 [Cucumis melo var. makuwa] >TYK2608...	[more]

BLAST of CSPI03G06950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06950.1	CSPI03G06950.1	mRNA