CSPI03G06180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Metallothionein-like protein type 3
Location	Chr3: 5308782 .. 5310223 (+)
RNA-Seq Expression	CSPI03G06180
Synteny	CSPI03G06180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGCGTGTGGTTCTCTCCCATGCTTATCATCTCCCATTGCCAATGGCAGCGATCCTGCAGTATAAATACACAACCAAACTTCATGACTTGGAGATCATAAGCAGAAAAAAAAGAGACCATTAACAAGCTATCTGTTTCCCTTCTCTTGCAACTTTTTAGCTTCTTCACCATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGTAAGTAGTTTTTACCTACAAATTTATCAGCAAATCTAACTAAGAGTTTACTTGTCACAAGACTGATTCTGGTATGGCTACCAAAGTTGTCTTAATATTAATATTGTTCTTGGTTGCCCTTTCGGGTTCAAGCTATATCAAACATGGCCATGAAGATTTGATTAAGAGATTAGTGTTTTTTTTAGCAACGCTTGTGTTGGCTGAATGAGATGTTTCTCTTAATACCATGAAAGTATCCATTTTGATTGTGTTGTGGTGAAGAAGATCAATGTTTTTCCTCAAAATCAACCAAAACCTGTAGAACGTACTATTGGTTTTATGTTTTGTCAATTGAAGGAAAAATTTGCATAGTTAAGTTCTTATAAGAAGTACTGACATGGTTTATAACGACAGGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGGTAATTGTTTCAGCTGATTTTGAGCCCCTTTTCCCCCAATGAGATCTTAAAATTCCAAGGTATGGATATGAGAAAGAATCAAGTAAATCATAATCAAAAGCATGAGTGAATTGAGAAGAGAAAAAAGTGAAAACAGCAAAGGAAGAACTTCACAACAAATTATTGACAAAAAGAGTTTTACAAAGCACCTGCCATCTAATGATATATCTCTTGGTTCTGCAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGAACACATACATCTGTTATTTCAACTAGCACAGCTATGTGAACGCCAGTAATAATGTAGCTGTGTTTGAAAAAAAAAAATAGTGTCTGTTTTATGTTCAAAACCTCTGTTCTTAGCAAGAGGTATGTTATGAATAATGTTTATTTCTGTTCTTCACCCACAGTCATGTAATGTTGGTCACTTCTGTGTCCATGGAGTTAATGGATAAGTTATACTAGTACACTCTCTTCCTCTCCATCCATTTTCATTTTTGTTCCATCTCATTCTTTATTCAAATCGAATTCATGTTTATAGAATCAATGAAACAATCTAGATGAGCTTCAGTACTTGGGAGAAACGTTACAGTATAGATATTACATTATAGATATTGTCTGTATTTGATAATATTATCCAGACTCAAAAGGTCAGGTGGAATGACAAAGGCTTATAAATTGAAATAATAAAAACTTCCAAAATCTTGTGGAG

mRNA sequence

GAGGCGTGTGGTTCTCTCCCATGCTTATCATCTCCCATTGCCAATGGCAGCGATCCTGCAGTATAAATACACAACCAAACTTCATGACTTGGAGATCATAAGCAGAAAAAAAAGAGACCATTAACAAGCTATCTGTTTCCCTTCTCTTGCAACTTTTTAGCTTCTTCACCATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGAACACATACATCTGTTATTTCAACTAGCACAGCTATGTGAACGCCAGTAATAATGTAGCTGTGTTTGAAAAAAAAAAATAGTGTCTGTTTTATGTTCAAAACCTCTGTTCTTAGCAAGAGGTATGTTATGAATAATGTTTATTTCTGTTCTTCACCCACAGTCATGTAATGTTGGTCACTTCTGTGTCCATGGAGTTAATGGATAAGTTATACTAGTACACTCTCTTCCTCTCCATCCATTTTCATTTTTGTTCCATCTCATTCTTTATTCAAATCGAATTCATGTTTATAGAATCAATGAAACAATCTAGATGAGCTTCAGTACTTGGGAGAAACGTTACAGTATAGATATTACATTATAGATATTGTCTGTATTTGATAATATTATCCAGACTCAAAAGGTCAGGTGGAATGACAAAGGCTTATAAATTGAAATAATAAAAACTTCCAAAATCTTGTGGAG

Coding sequence (CDS)

ATGTCGACATGTGGCAACTGCGACTGTTCCGACAAGACCCAATGCGTGAAACAAGGGAGCAGCTATGGCGCTGTCATCACGGAGAATGAGAACAGCTCATTTGATGCCATAGTTATGGACTTCCCAGCGGCCGAGCACAACGACAAGTGCAGCTGCAACCCCTGCAGCTGTCCAGACTGTGGCTGCAACAATTGA

Protein sequence

MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGCNN*

Homology

[Close]

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot
Match: Q40256 (Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.8e-15
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCN-PCSCPD 60
          MSTCGNCDC DK+QCVK+G+SYG  I E E S  D +++   AAEH+ KC C   C+C D
Sbjct: 1  MSTCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVAAEAAEHDGKCKCGAACACTD 60

Query: 61 CGCNN 65
          C C N
Sbjct: 61 CKCGN 65

[Close]

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot
Match: Q96386 (Metallothionein-like protein type 3 OS=Carica papaya OX=3649 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-14
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 3  TCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDCG 62
          TCGNCDC+DKTQCVK+GSSY A I E E S    +VMD PAAE++ KC C P CSC +C 
Sbjct: 4  TCGNCDCADKTQCVKKGSSYTADIIETEKSIM-TVVMDAPAAENDGKCKCGPSCSCTNCT 63

Query: 63 CNN 65
          C +
Sbjct: 64 CGH 65

[Close]

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot
Match: O24059 (Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.0e-14
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDCGC 63
          C NCDC+D TQCVK+G+SY  VI E EN S D + +D PAAEH+ KC C   CSC  C C
Sbjct: 5  CDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFVDAPAAEHDGKCKCGTGCSCVSCTC 64

Query: 64 NN 65
           +
Sbjct: 65 GH 66

[Close]

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot
Match: O48951 (Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-13
Identity = 34/62 (54.84%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNP-CSCPDC 61
          S C NCDCSD +QC K+G S+  VI E EN S D ++MD PAAE+   C C P C+C DC
Sbjct: 3  SKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVIMDAPAAENGGNCKCGPSCACVDC 62

Query: 62 GC 63
           C
Sbjct: 63 KC 64

[Close]

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot
Match: A2WLS0 (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC-NPCSCPDCGC 63
          CGNCDC+DK+QCVK+G+SYG VI E E S F+ +     A E N  C C   CSC DC C
Sbjct: 5  CGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA----AGEENGGCKCGTSCSCTDCKC 60

[Close]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL
Match: D2J0B0 (Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.2e-31
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL
Match: E5GBS4 (Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.3e-28
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MS+CGNCDCSDKTQCVK+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+C
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL
Match: A0A5D3BSV6 (Metallothionein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00300 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 17 KQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGCNN 65
          K+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+CGCNN
Sbjct: 7  KKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGCNN 54

[Close]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL
Match: A0A2P5D400 (Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_098150 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC-NPCSCPDCGC 63
          CG+CDC+DK+QCVK+GSSY  VI E E S  DA+VMD PAAEHN KC C   CSC +C C
Sbjct: 5  CGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCVNCTC 64

Query: 64 NN 65
           +
Sbjct: 65 GH 66

[Close]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL
Match: D6BQM9 (Metallothionein-like MT-3 OS=Jatropha curcas OX=180498 GN=JCGZ_20992 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHND-KCSCNP-CSCPD 61
          STCGNCDC+DK+QCVK+GSSY A I E E S    IVMD PA   ND KC C P C+C D
Sbjct: 3  STCGNCDCADKSQCVKKGSSYTADIVETEKSFVSTIVMDVPAGAENDGKCKCGPSCTCVD 62

Query: 62 CGCNN 65
          CGC +
Sbjct: 63 CGCGH 67

[Close]

BLAST of CSPI03G06180 vs. NCBI nr
Match: ACZ69388.1 (metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical protein Csa_011531 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC
Sbjct: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of CSPI03G06180 vs. NCBI nr
Match: ADN33916.1 (metallothionein-like protein [Cucumis melo subsp. melo])

HSP 1 Score: 132.1 bits (331), Expect = 1.7e-27
Identity = 58/64 (90.62%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 1  MSTCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDC 60
          MS+CGNCDCSDKTQCVK+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+C
Sbjct: 1  MSSCGNCDCSDKTQCVKKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNC 60

Query: 61 GCNN 65
          GCNN
Sbjct: 61 GCNN 64

[Close]

BLAST of CSPI03G06180 vs. NCBI nr
Match: KAG7031367.1 (Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGC 63
          CGNCDCSD + CVK+G+SYGAVI ENE S FDAI MD PAAEHNDKCSCNPCSC DC C
Sbjct: 5  CGNCDCSDSSNCVKKGNSYGAVIMENEKSYFDAIDMDVPAAEHNDKCSCNPCSCKDCHC 63

[Close]

BLAST of CSPI03G06180 vs. NCBI nr
Match: TYK02234.1 (metallothionein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 43/48 (89.58%), Postives = 47/48 (97.92%), Query Frame = 0


Query: 17 KQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSCNPCSCPDCGCNN 65
          K+G+SYGAVI ENENSSFDAIVM+FPAAEHNDKCSCNPCSCP+CGCNN
Sbjct: 7  KKGNSYGAVIMENENSSFDAIVMNFPAAEHNDKCSCNPCSCPNCGCNN 54

[Close]

BLAST of CSPI03G06180 vs. NCBI nr
Match: PON68011.1 (Metallothionein-like protein type [Parasponia andersonii])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 4  CGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC-NPCSCPDCGC 63
          CG+CDC+DK+QCVK+GSSY  VI E E S  DA+VMD PAAEHN KC C   CSC +C C
Sbjct: 5  CGSCDCADKSQCVKKGSSYSLVIVETEKSYMDAVVMDAPAAEHNGKCKCGTSCSCVNCTC 64

Query: 64 NN 65
           +
Sbjct: 65 GH 66

[Close]

BLAST of CSPI03G06180 vs. TAIR 10
Match: AT3G15353.1 (metallothionein 3 )

HSP 1 Score: 67.4 bits (163), Expect = 4.8e-12
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC---NPCSCP 61
          S CG+CDC+DKTQCVK+G+SY   I E + S  +A++MD  A E+N  C C   + CSC 
Sbjct: 3  SNCGSCDCADKTQCVKKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCSCV 62

Query: 62 DCGC 63
          +C C
Sbjct: 63 NCTC 66

[Close]

BLAST of CSPI03G06180 vs. TAIR 10
Match: AT3G15353.2 (metallothionein 3 )

HSP 1 Score: 57.4 bits (137), Expect = 5.0e-09
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2  STCGNCDCSDKTQCVKQGSSYGAVITENENSSFDAIVMDFPAAEHNDKCSC---NPCSCP 61
          S CG+CDC+DKTQ  K+G+SY   I E + S  +A++MD  A E+N  C C   + CSC 
Sbjct: 3  SNCGSCDCADKTQ--KKGTSYTFDIVETQESYKEAMIMDVGAEENNANCKCKCGSSCSCV 62

Query: 62 DCGC 63
          +C C
Sbjct: 63 NCTC 64

The following BLAST results are available for this feature:

BLAST of CSPI03G06180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40256	7.8e-15	56.92	Metallothionein-like protein type 3 OS=Musa acuminata OX=4641 PE=3 SV=1	[more]
Q96386	2.3e-14	61.90	Metallothionein-like protein type 3 OS=Carica papaya OX=3649 PE=3 SV=1	[more]
O24059	5.0e-14	56.45	Metallothionein-like protein type 3 OS=Malus domestica OX=3750 GN=MT2 PE=3 SV=1	[more]
O48951	1.1e-13	54.84	Metallothionein-like protein 1 OS=Prunus avium OX=42229 GN=MT1 PE=3 SV=1	[more]
A2WLS0	4.0e-11	55.00	Metallothionein-like protein 3A OS=Oryza sativa subsp. indica OX=39946 GN=MT3A P...	[more]

BLAST of CSPI03G06180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D2J0B0	6.2e-31	100.00	Metallothionein-like protein type 3 OS=Cucumis sativus OX=3659 GN=MTP-3 PE=2 SV=...	[more]
E5GBS4	8.3e-28	90.63	Metallothionein-like protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3BSV6	1.3e-17	89.58	Metallothionein-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A2P5D400	1.2e-13	62.90	Metallothionein-like protein type OS=Parasponia andersonii OX=3476 GN=PanWU01x14...	[more]
D6BQM9	4.4e-13	63.08	Metallothionein-like MT-3 OS=Jatropha curcas OX=180498 GN=JCGZ_20992 PE=2 SV=1	[more]

BLAST of CSPI03G06180 vs. NCBI nr


Match Name	E-value	Identity	Description
ACZ69388.1	1.3e-30	100.00	metallothionein-like protein type 3 [Cucumis sativus] >KGN56243.1 hypothetical p...	[more]
ADN33916.1	1.7e-27	90.63	metallothionein-like protein [Cucumis melo subsp. melo]	[more]
KAG7031367.1	1.0e-19	79.66	Metallothionein-like protein type 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TYK02234.1	2.8e-17	89.58	metallothionein-like protein [Cucumis melo var. makuwa]	[more]
PON68011.1	2.4e-13	62.90	Metallothionein-like protein type [Parasponia andersonii]	[more]

BLAST of CSPI03G06180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15353.1	4.8e-12	50.00	metallothionein 3	[more]
AT3G15353.2	5.0e-09	46.88	metallothionein 3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06180.1	CSPI03G06180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0008270	zinc ion binding