CSPI03G06170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr3: 5297007 .. 5297573 (-)
RNA-Seq Expression	CSPI03G06170
Synteny	CSPI03G06170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGTAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

mRNA sequence

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGTAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

Coding sequence (CDS)

ATGATCCCTCAAGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCCATCCTCCCTTTCCTCACCGCGTTCTCGATCGTAATTGTCATCTTCATCACCATCATCATATTCTCTGTGGTTGCTTCTTTTGCCATCATAGTCTGCATCTATGTCATTTGCAAATACCTAATTGGGTCAACGAGTTTAGATGGCCACAGTTCCAACCTCGAAGCGGGTGAGCCAAACGAAAACCAAATGATGATCACTAGGAGTAGGATTTTGTTAACTCATCATCAAACGAGTAGTCATGGAAGAGACATCATGGAGAGGTCAGAAAGTAATGCATGGAGGGAGGACATGGAGAGAACAATAATGATAGAGAAAGTGGCCGCGCCGGTGAGCTATGGGAGCTCGGAGGCGGCGACAAAATGCATTGATTGTGCAATATGTCTGGAGGATTTTGAAAATGGAGAGCTTTGCCAGAATTTTCCAGTGTGTAATCACATCTTTCATTATTCTTGTATTCAACATTGGTTGAAGAAGAACATGACTTGTCCCATTTGTCGCTGTTCTATTGTCAATGATTAA

Protein sequence

MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGSTSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIVND*

Homology

[Close]

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 128 YGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  +  P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot
Match: Q67YI6 (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-10
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 133 AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           +A  C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-10
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 122 VAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPIC 181
           V A  S   S+  +K ++CAICL + E+ E  +  P+CNH+FH  CI  WL  + TCP+C
Sbjct: 106 VFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVC 165

Query: 182 RCSI 186
           R ++
Sbjct: 166 RSNL 169

[Close]

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 126 VSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCS 185
           + Y  ++  T    CAICL D++   L +  P CNH+FH  CI  WL+ N TCP+CR S
Sbjct: 133 ILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTS 191

[Close]

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-10
Identity = 26/65 (40.00%), Postives = 36/65 (55.38%), Query Frame = 0


Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           K + P +Y   E+     DC +C + F  G+ C+N P C H+FH  C+  WL K  TCPI
Sbjct: 96  KFSEPSTYTRYES-----DCVVCFDGFRQGQWCRNLPGCGHVFHRKCVDTWLLKASTCPI 155

Query: 181 CRCSI 186
           CR  +
Sbjct: 156 CRARV 155

[Close]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL
Match: A0A0A0L6M6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.2e-100
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVND 189
           CRCSIVND
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL
Match: A0A5A7UZF7 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005240 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 9.0e-91
Identity = 173/188 (92.02%), Postives = 177/188 (94.15%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVND 189
           CRCSIVND
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL
Match: A0A5D3BTV2 (Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00260 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.7e-69
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFPV
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPV 158

[Close]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL
Match: E5GBS2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.3e-68
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL
Match: A0A7N2L6L4 (RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 6.4e-20
Identity = 73/189 (38.62%), Postives = 105/189 (55.56%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPP--SILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIG 60
           M+PQA   P   PPP   IL F+    I I+ ++ II+ SVV    I++ I  IC  L  
Sbjct: 4   MVPQAFVPPHPMPPPLHPILSFIAIVCIAILFYVVIIVVSVVVPLFILLVIADICD-LFC 63

Query: 61  STSLDGHSSNLEAGEPNENQMM-ITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI 120
             S +    +LE GE   +Q   I  S   + + +  +  + ++E     + RE  +   
Sbjct: 64  MPSNESPVRDLEEGERIAHQPEDIPYSSCFILNIRIWASLKMLIEAVIEVSKREKQQ--- 123

Query: 121 MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMT 180
            +EK+   V+YGS E A+ C  C ICLEDF+NG+ CQ FP CNH+FH +CI +WLKK+ T
Sbjct: 124 ALEKLPPLVNYGSKEIASTCTVCVICLEDFKNGQSCQVFPSCNHVFHSNCIGYWLKKSPT 183

Query: 181 CPICRCSIV 187
           CPICR  ++
Sbjct: 184 CPICRVPVM 188

[Close]

BLAST of CSPI03G06170 vs. NCBI nr
Match: KAA0060638.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 1.9e-90
Identity = 173/188 (92.02%), Postives = 177/188 (94.15%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPI 180

Query: 181 CRCSIVND 189
           CRCSIVND
Sbjct: 181 CRCSIVND 188

[Close]

BLAST of CSPI03G06170 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 301.2 bits (770), Expect = 6.2e-78
Identity = 173/268 (64.55%), Postives = 176/268 (65.67%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE
Sbjct: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQN------------------------- 180
           KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQN                         
Sbjct: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPGFSESEQRGNRNEEMTMTTTTVA 180

Query: 181 ----------------------------------------------------------FP 186
                                                                     FP
Sbjct: 181 TTMVADPEERNRQLQMAMEKLTKPSAYYNCEENDESPSTLSECTICLEDLGERVSCRVFP 240

[Close]

BLAST of CSPI03G06170 vs. NCBI nr
Match: TYK02232.1 (putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFPV
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPV 158

[Close]

BLAST of CSPI03G06170 vs. NCBI nr
Match: ADN33914.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 269.2 bits (687), Expect = 2.6e-68
Identity = 142/158 (89.87%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGST 60
           MIPQALTVPQSNPPPSILPFLTAFSIVIVIFI+IIIFSVVASFAII+ IY+ICKYLIGST
Sbjct: 1   MIPQALTVPQSNPPPSILPFLTAFSIVIVIFISIIIFSVVASFAIIIFIYIICKYLIGST 60

Query: 61  SLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTIMIE 120
           SLD H S+LEAGE NENQ MI RSRILLTHHQTSSHGRDIMERSESN WRE MERTIMIE
Sbjct: 61  SLDEHVSDLEAGETNENQRMIARSRILLTHHQTSSHGRDIMERSESNTWREGMERTIMIE 120

Query: 121 KVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPV 159
           KVAAPVSYGSSE   KCIDCAICLEDFENGELCQNFP+
Sbjct: 121 KVAAPVSYGSSEVVAKCIDCAICLEDFENGELCQNFPL 158

[Close]

BLAST of CSPI03G06170 vs. NCBI nr
Match: KAG6600727.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-52
Identity = 119/197 (60.41%), Postives = 142/197 (72.08%), Query Frame = 0


Query: 1   MIPQAL-TVPQSNPPPSILPFLTAFSIVIVIFITIIIFSVVASFAIIVCIYVICKYLIGS 60
           MIPQAL TVPQSNPPPS LPFLTAFSIVIVI I+I+IFS++ASF+II+ I+V+C+YLIGS
Sbjct: 1   MIPQALTTVPQSNPPPSTLPFLTAFSIVIVIIISIVIFSILASFSIIIFIFVLCQYLIGS 60

Query: 61  TSLDGHSSNLEAGEPNENQMMITRSRILLTHHQTSSHGRDIMERSESNAWREDMERTI-- 120
           T+LDGH  ++EAGE N+NQ    R             GR ++ R ESN WRE +ERT+  
Sbjct: 61  TNLDGHHLDVEAGERNQNQNQTMR-------------GRSLVSRYESNIWREALERTMAE 120

Query: 121 -------MIEKVAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQH 180
                  ++ K+A  V YG SE A K  DCAICLE+FENGE CQ F VC HIFHYSCIQ 
Sbjct: 121 RKGRRAQIVMKMATRVRYGCSEVAAKYTDCAICLEEFENGEDCQIFVVCKHIFHYSCIQR 180

Query: 181 WLKKNMTCPICRCSIVN 188
           WL++NMTCPICR  I N
Sbjct: 181 WLRRNMTCPICRSPIAN 184

[Close]

BLAST of CSPI03G06170 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-11
Identity = 28/59 (47.46%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 128 YGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           YGS E      +CAICL +F +GE  +  P CNH FH SCI  WL  + +CP CR S++
Sbjct: 93  YGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLI 151

[Close]

BLAST of CSPI03G06170 vs. TAIR 10
Match: AT3G18930.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 133 AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           +A  C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of CSPI03G06170 vs. TAIR 10
Match: AT3G18930.2 (RING/U-box superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-11
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 133 AATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCSIV 187
           +A  C DCA+CL +FE G+  +  P+C H FH  CI  WL+ +  CP+CR +I+
Sbjct: 149 SAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202

[Close]

BLAST of CSPI03G06170 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-11
Identity = 27/64 (42.19%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 122 VAAPVSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPIC 181
           V A  S   S+  +K ++CAICL + E+ E  +  P+CNH+FH  CI  WL  + TCP+C
Sbjct: 106 VFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVC 165

Query: 182 RCSI 186
           R ++
Sbjct: 166 RSNL 169

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BLAST of CSPI03G06170 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-11
Identity = 26/59 (44.07%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 126 VSYGSSEAATKCIDCAICLEDFENGELCQNFPVCNHIFHYSCIQHWLKKNMTCPICRCS 185
           + Y  ++  T    CAICL D++   L +  P CNH+FH  CI  WL+ N TCP+CR S
Sbjct: 133 ILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRTS 191

The following BLAST results are available for this feature:

BLAST of CSPI03G06170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.5e-10	47.46	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q67YI6	2.0e-10	44.44	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
Q8W571	2.6e-10	42.19	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q8RX29	3.4e-10	44.07	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9ZV51	4.4e-10	40.00	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]

BLAST of CSPI03G06170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6M6	6.2e-100	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104950 P...	[more]
A0A5A7UZF7	9.0e-91	92.02	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BTV2	5.7e-69	90.51	Putative RING-H2 finger protein ATL19 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
E5GBS2	1.3e-68	89.87	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A7N2L6L4	6.4e-20	38.62	RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CSPI03G06170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060638.1	1.9e-90	92.02	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
XP_011652743.1	6.2e-78	64.55	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]
TYK02232.1	1.2e-68	90.51	putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]	[more]
ADN33914.1	2.6e-68	89.87	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAG6600727.1	1.2e-52	60.41	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CSPI03G06170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	1.1e-11	47.46	RING/U-box superfamily protein	[more]
AT3G18930.1	1.4e-11	44.44	RING/U-box superfamily protein	[more]
AT3G18930.2	1.4e-11	44.44	RING/U-box superfamily protein	[more]
AT4G40070.1	1.8e-11	42.19	RING/U-box superfamily protein	[more]
AT2G35910.1	2.4e-11	44.07	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 140..181 e-value: 6.3E-6 score: 35.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 139..182 e-value: 2.4E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 140..182 score: 12.858103
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 92..187 e-value: 1.0E-18 score: 68.7
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 14..184
None	No IPR available	PANTHER	PTHR45798:SF72	ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED	coord: 14..184
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 139..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06170.1	CSPI03G06170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane