CSPI03G05640 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G05640
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDSBA domain-containing protein
LocationChr3: 4773458 .. 4775528 (-)
RNA-Seq ExpressionCSPI03G05640
SyntenyCSPI03G05640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGTGTACGCGCTCAATAGGCAAGGACGTACTCTATACGACTTCGGAGGTTTGGGTTAATGAAACCTAGGGCTTGGATTTGGAGGTTTTGACTAATAATGTATGGGAAGTTGCAAACTGAAATGCATCAGATCTGAGGTTTTCTTATAAAAAAAATGGAAGAAGGAAAGCACAAGCTTCTGACTATACTGACATCAAAATATGTAGTGGTAAAAACTTTGAGTCGACTTCAGAAATAATAGCTGCTGCATACATTCATTTTATTTTAATTCATTTTTTCTTTTGTTTATGAAGAGTATTTATTCTTCTCCCACTTTGTTACTTCCTCTTTAATTTATGTTCCTGACATAGTACGATTTTTCTTTTCGTTCTTTGTCAAAAAAAATTCTTTTATTTTTGCGTTGAATAATGGGGAAATTTTAGGTTTCGTTGGCTTTATTTTGTCTATTTAATGAACTATTGACCTAATCATTCTTAATTTAAAATTTGGCAAGAGAATATGTAATACCAAGTTTCAAAGGCCTGAATGAGAAGCTGAAGAATTATTTATTTATTTATTTTGCTATAATTGGATGTGAATGTTTTGTGGTTGATTGATTCTTACACTTTAGTATTTTTTTTTTCTCCATATTTAAGTTATGAAGTTCATTGGTTGTGGTATATAGAGTTAAGCAATAGTTCCGCAATATTTTGGGTTTCTACTTTGAGTTGGCTAGTTTATGGTCCTGGATCTTGTTAAAAATTTATCTTTCTTTTGCCTTTGTAAAAACATGTTTCTGTTTGTATAGCTACTACTATTTTTTGTAATTTGGGATTGACATAGAACATAGTTAGATTTTGGTCTGTTAAGAAAGAAAGAAAATAAAGAAGCAAAAGAAGCTTGGAACTTCATTCATCTTTTTCTCACTCTTTTCTTGGTGAATGTATTCAGGTCCTGAAGATTATGTAGCAGAGTACTACCAGCAGCAGGTAGAAATGCTTGCTCCGTACTTGTATGTTTTTTTATGATTTAAGACATTCTTCACTGCTCAAACCAAAAATTTGTTTTCTTCTCTAGCATTTTTGCTTTCTGTCTAAAAAGAAATATGTTTTCTTGTTTGCTTCGCAATATTAATTCTAGGCAAGTTGAGAATGCATATTTTGATCTTGATTTCTGATATACTGTGAAAGAATTTCTATATTGCTTCTTGATTTCTTCAATTTGATCTTAGTAACTTTGTTTTTTAACAATAAGCGGCGAGAGTTCAGTGCAAGGTTGGTTGAAATAAAAAAGGTAAATTGACATTCGTAAATGTGTGGAATAGTTTTATGCAATACTTGAATTTCCTTCATTTTTAACACATCGTATGCTTTCATTTTTATCCTAATGAACTTCTCCCAAACATCCTCTAGCCCTCTAAATTTATCCATGAAGAATTGAAGATCCTATAATTCCTCATCAACCTTATACCACTCGTAGAACATAAAAGCAATGTACAAACCATAATGCTTTTTAGGCGGAACATTTGACTATTTGAGAACCCTGAATTTACTTTCAGGGGTAGAGCCTTGGACATTTGAGCAATGTTTGGGGGATAAATATTAAAAAGAAAAAGTCACCTTGTCCCCAATTTCAGAGATAAATATTAATGAGAAGGCTGCAGTGGACTTTGACTTGGCAACTACAGCCAACATAGATGAAGGTCCTCCCTTCACAAACTCCGGGATCAAAGAAGACTTTACCTTGACAGTTTGCCTTGCCTATTATTTTTGGTTTGCTTGATAGTTAAGACTGAATATTATAGACTTTGAAAGTATGAATAGACTTTGAAACTATGATTTTTGCTGACACTTGCATTGTATTTTCAGGGGAAATACTCTAGACAGCCATAAGCTTATATATTTGGAAGGTCAACAAGACTTAGGCAAACAACAAGTTCTTGTGGAGGAGTTGTGCGTTGAATACTTCACTCAGGGAAAATACATTGGTGACCGGTAACTCAATTGTGAATAAGATTTTAGGATGATGTGATTTATGTAATTGTGAACAATATTTATTATTAATTGTGCACAACACTTATTATTA

mRNA sequence

ATGGATGTTGTGTACGCGCTCAATAGGCAAGGACGTACTCTATACGACTTCGGAGATCTGAGGTTTTCTTATAAAAAAAATGGAAGAAGGAAAGCACAAGCTTCTGACTATACTGACATCAAAATATGTAGTGGTCCTGAAGATTATGTAGCAGAGTACTACCAGCAGCAGATAAATATTAATGAGAAGGCTGCAGTGGACTTTGACTTGGCAACTACAGCCAACATAGATGAAGGTCCTCCCTTCACAAACTCCGGGATCAAAGAAGACTTTACCTTGACAGTTTGCCTTGCCTATTATTTTTGGGGAAATACTCTAGACAGCCATAAGCTTATATATTTGGAAGGTCAACAAGACTTAGGCAAACAACAAGTTCTTGTGGAGGAGTTGTGCGTTGAATACTTCACTCAGGGAAAATACATTGGTGACCGGTAACTCAATTGTGAATAAGATTTTAGGATGATGTGATTTATGTAATTGTGAACAATATTTATTATTAATTGTGCACAACACTTATTATTA

Coding sequence (CDS)

ATGGATGTTGTGTACGCGCTCAATAGGCAAGGACGTACTCTATACGACTTCGGAGATCTGAGGTTTTCTTATAAAAAAAATGGAAGAAGGAAAGCACAAGCTTCTGACTATACTGACATCAAAATATGTAGTGGTCCTGAAGATTATGTAGCAGAGTACTACCAGCAGCAGATAAATATTAATGAGAAGGCTGCAGTGGACTTTGACTTGGCAACTACAGCCAACATAGATGAAGGTCCTCCCTTCACAAACTCCGGGATCAAAGAAGACTTTACCTTGACAGTTTGCCTTGCCTATTATTTTTGGGGAAATACTCTAGACAGCCATAAGCTTATATATTTGGAAGGTCAACAAGACTTAGGCAAACAACAAGTTCTTGTGGAGGAGTTGTGCGTTGAATACTTCACTCAGGGAAAATACATTGGTGACCGGTAA

Protein sequence

MDVVYALNRQGRTLYDFGDLRFSYKKNGRRKAQASDYTDIKICSGPEDYVAEYYQQQININEKAAVDFDLATTANIDEGPPFTNSGIKEDFTLTVCLAYYFWGNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR*
Homology
[Close]
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match: A0A0A0L7T2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G095030 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 1   MDVVYALNRQGRTLYDFGDLRFSYKKNGRRKAQASDYTDIKICSGPEDYVAEYYQQQINI 60
           MDVVYALN+QGRTLYDFGDLRFSYKKNGRRKAQASDYTDIKICSGPEDYVAEYYQQQINI
Sbjct: 1   MDVVYALNKQGRTLYDFGDLRFSYKKNGRRKAQASDYTDIKICSGPEDYVAEYYQQQINI 60

Query: 61  NEKAAVDFDLATTANIDEGPPFTNSGIKEDFTLTVCLAYYFWGNTLDSHKLIYLEGQQDL 120
           NEKAAVDFDLATTANIDEGPPFTNSGIKEDFTLTVCLAYYFWGNTLDSHKLIYLEGQQDL
Sbjct: 61  NEKAAVDFDLATTANIDEGPPFTNSGIKEDFTLTVCLAYYFWGNTLDSHKLIYLEGQQDL 120

Query: 121 GKQQVLVEELCVEYFTQGKYIGDR 145
           GKQQVLVEELCVEYFTQGKYIGDR
Sbjct: 121 GKQQVLVEELCVEYFTQGKYIGDR 144

[Close]
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match: A0A5A7U4Z3 (DSBA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00140 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 152 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 193

[Close]
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match: A0A5D3CTQ6 (DSBA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1623G00040 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 152 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 193

[Close]
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match: A0A1S3CLY8 (uncharacterized protein YwbO isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502411 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 105 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 146

[Close]
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match: A0A1S3CMA4 (uncharacterized protein YwbO isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502411 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 105 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 146

[Close]
BLAST of CSPI03G05640 vs. NCBI nr
Match: TYK14915.1 (hypothetical protein E5676_scaffold1623G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 152 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 193

[Close]
BLAST of CSPI03G05640 vs. NCBI nr
Match: XP_038900410.1 (uncharacterized protein YwbO [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 136 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 177

[Close]
BLAST of CSPI03G05640 vs. NCBI nr
Match: KAA0048695.1 (hypothetical protein E6C27_scaffold4358G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 152 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 193

[Close]
BLAST of CSPI03G05640 vs. NCBI nr
Match: XP_008464572.1 (PREDICTED: uncharacterized protein YwbO isoform X3 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 105 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 146

[Close]
BLAST of CSPI03G05640 vs. NCBI nr
Match: XP_008464571.1 (PREDICTED: uncharacterized protein YwbO isoform X2 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-11
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GNTLDSHKLIYL GQQ LGKQ  LVEELC+ YFTQGKYIGDR
Sbjct: 105 GNTLDSHKLIYLAGQQGLGKQHDLVEELCLGYFTQGKYIGDR 146

[Close]
BLAST of CSPI03G05640 vs. TAIR 10
Match: AT5G38900.1 (Thioredoxin superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 103 GNTLDSHKLIYLEGQQDLGKQQVLVEELCVEYFTQGKYIGDR 145
           GN+LDSH+LI+  G+Q   KQ  LVEEL + YFTQGK+IGDR
Sbjct: 104 GNSLDSHRLIHYTGKQAPEKQHTLVEELFIGYFTQGKFIGDR 145

The following BLAST results are available for this feature:
BLAST of CSPI03G05640 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G05640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L7T21.4e-7899.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G095030 PE=4 SV=1[more]
A0A5A7U4Z32.4e-1185.71DSBA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3CTQ62.4e-1185.71DSBA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3CLY82.4e-1185.71uncharacterized protein YwbO isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502411 ... [more]
A0A1S3CMA42.4e-1185.71uncharacterized protein YwbO isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502411 ... [more]
BLAST of CSPI03G05640 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK14915.15.0e-1185.71hypothetical protein E5676_scaffold1623G00040 [Cucumis melo var. makuwa][more]
XP_038900410.15.0e-1185.71uncharacterized protein YwbO [Benincasa hispida][more]
KAA0048695.15.0e-1185.71hypothetical protein E6C27_scaffold4358G00140 [Cucumis melo var. makuwa][more]
XP_008464572.15.0e-1185.71PREDICTED: uncharacterized protein YwbO isoform X3 [Cucumis melo][more]
XP_008464571.15.0e-1185.71PREDICTED: uncharacterized protein YwbO isoform X2 [Cucumis melo][more]
BLAST of CSPI03G05640 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38900.11.3e-0964.29Thioredoxin superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10Glutaredoxincoord: 45..144
e-value: 4.4E-5
score: 25.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G05640.1CSPI03G05640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity