CSPI03G05540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	(R)-mandelonitrile lyase 1-like
Location	Chr3: 4698720 .. 4699124 (+)
RNA-Seq Expression	CSPI03G05540
Synteny	CSPI03G05540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATCTGGATATGAAGGAATCTAGTCGCAAAATCATTATTGATGAGGAAGTGGTCCAGTCTTTCTTTGATGACTTTGCGTCTGATATTTCGTTTTCAAGTAAACATATCATCTTTTCACCCAGAATTGTGAAGAGCACAATTGTCCCAAGCTTCATGAAACTGGTTCATTTGATTTTGACTTCTACCATTACATAAACAATTAATTTATGAAATTATTCTATTTTCGTAGATAACTCTCAAATAGCTCGTACTCTTAGGAGACGTGAGCACTTGAGGAACTTGGAGTTGGAGCGATATGTTGCACAAAATGAGAAGATTCTCATATCGATTGCTTCAGTACAGGATGAGTTGATCCCTCCACACGCCGTTCACTTCAACTATATCGAGCTGTATGAATAA

mRNA sequence

ATGACTAATCTGGATATGAAGGAATCTAGTCGCAAAATCATTATTGATGAGGAAGTGGTCCAGTCTTTCTTTGATGACTTTGCGTCTGATATTTCGTTTTCAAATAACTCTCAAATAGCTCGTACTCTTAGGAGACGTGAGCACTTGAGGAACTTGGAGTTGGAGCGATATGTTGCACAAAATGAGAAGATTCTCATATCGATTGCTTCAGTACAGGATGAGTTGATCCCTCCACACGCCGTTCACTTCAACTATATCGAGCTGTATGAATAA

Coding sequence (CDS)

ATGACTAATCTGGATATGAAGGAATCTAGTCGCAAAATCATTATTGATGAGGAAGTGGTCCAGTCTTTCTTTGATGACTTTGCGTCTGATATTTCGTTTTCAAATAACTCTCAAATAGCTCGTACTCTTAGGAGACGTGAGCACTTGAGGAACTTGGAGTTGGAGCGATATGTTGCACAAAATGAGAAGATTCTCATATCGATTGCTTCAGTACAGGATGAGTTGATCCCTCCACACGCCGTTCACTTCAACTATATCGAGCTGTATGAATAA

Protein sequence

MTNLDMKESSRKIIIDEEVVQSFFDDFASDISFSNNSQIARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFNYIELYE*

Homology

[Close]

BLAST of CSPI03G05540 vs. ExPASy TrEMBL
Match: A0A5D3CIG3 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00470 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.1e-07
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 32 SFSNNSQ-IARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
          +F + SQ +ART RR EH RNLEL+RYVAQN KILISI   QD+ I PH VHF+
Sbjct: 34 TFLDASQPVARTPRRCEHSRNLELDRYVAQNGKILISIVPGQDKRISPHVVHFS 87

[Close]

BLAST of CSPI03G05540 vs. ExPASy TrEMBL
Match: A0A5A7UNR1 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00210 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 40  ARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
           A T RRREH RNLEL+RYVAQN+KILISIA  QD+ I  H V FN
Sbjct: 72  AHTPRRREHSRNLELDRYVAQNKKILISIAPGQDKSISLHVVRFN 116

[Close]

BLAST of CSPI03G05540 vs. ExPASy TrEMBL
Match: A0A1S4E4L2 (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-06
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 20  VQSFFDDFASDISFSNNSQ-IARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPP 79
           V S      +   F+N SQ +ART RR EH RNLEL+RYVAQN KILI I   QD+ I P
Sbjct: 274 VDSLIHHLKTFAPFTNASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISP 333

Query: 80  HAVHFN 85
           + VHF+
Sbjct: 334 YVVHFS 339

[Close]

BLAST of CSPI03G05540 vs. ExPASy TrEMBL
Match: A0A5D3DED2 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00100 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-06
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1  MTNLDMKESSRKIIIDEEVVQSFFDDFASDISFSNNSQIARTLRRREHLRNLELERYVAQ 60
          +T+LD  ES      + E   +  +  + D + + +   A T +RR+H +NLEL+RYVAQ
Sbjct: 8  LTSLD--ESDGLFDFNVEEFNTVTNTSSVDNTSNASQSAAPTSKRRQHSKNLELDRYVAQ 67

Query: 61 NEKILISIASVQDELIPPHAVHFN 85
          N KILISIA  QD+ I PH V FN
Sbjct: 68 NRKILISIAPGQDKAISPHVVCFN 89

[Close]

BLAST of CSPI03G05540 vs. ExPASy TrEMBL
Match: A0A5D3BGW9 ((R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-05
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 32  SFSNNSQIARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
           ++  +   A TL+RR+H RNLEL++YVA+N KI ISIA  QD+ I PH V F+
Sbjct: 87  TYDASQPAAPTLKRRQHFRNLELDKYVAKNGKIFISIALGQDKSILPHVVRFS 139

[Close]

BLAST of CSPI03G05540 vs. NCBI nr
Match: KAA0063738.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK10964.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 32 SFSNNSQ-IARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
          +F + SQ +ART RR EH RNLEL+RYVAQN KILISI   QD+ I PH VHF+
Sbjct: 34 TFLDASQPVARTPRRCEHSRNLELDRYVAQNGKILISIVPGQDKRISPHVVHFS 87

[Close]

BLAST of CSPI03G05540 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-06
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 0


Query: 20  VQSFFDDFASDISFSNNSQ-IARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPP 79
           V S      +   F+N SQ +ART RR EH RNLEL+RYVAQN KILI I   QD+ I P
Sbjct: 274 VDSLIHHLKTFAPFTNASQPVARTPRRCEHSRNLELDRYVAQNGKILIFIVPGQDKRISP 333

Query: 80  HAVHFN 85
           + VHF+
Sbjct: 334 YVVHFS 339

[Close]

BLAST of CSPI03G05540 vs. NCBI nr
Match: KAA0057523.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK08205.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-06
Identity = 32/45 (71.11%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 40  ARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
           A T RRREH RNLEL+RYVAQN+KILISIA  QD+ I  H V FN
Sbjct: 72  AHTPRRREHSRNLELDRYVAQNKKILISIAPGQDKSISLHVVRFN 116

[Close]

BLAST of CSPI03G05540 vs. NCBI nr
Match: KAA0060287.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK22037.1 (R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 37/84 (44.05%), Postives = 51/84 (60.71%), Query Frame = 0


Query: 1  MTNLDMKESSRKIIIDEEVVQSFFDDFASDISFSNNSQIARTLRRREHLRNLELERYVAQ 60
          +T+LD  ES      + E   +  +  + D + + +   A T +RR+H +NLEL+RYVAQ
Sbjct: 8  LTSLD--ESDGLFDFNVEEFNTVTNTSSVDNTSNASQSAAPTSKRRQHSKNLELDRYVAQ 67

Query: 61 NEKILISIASVQDELIPPHAVHFN 85
          N KILISIA  QD+ I PH V FN
Sbjct: 68 NRKILISIAPGQDKAISPHVVCFN 89

[Close]

BLAST of CSPI03G05540 vs. NCBI nr
Match: TYJ98367.1 ((R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 9.8e-05
Identity = 28/53 (52.83%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 32  SFSNNSQIARTLRRREHLRNLELERYVAQNEKILISIASVQDELIPPHAVHFN 85
           ++  +   A TL+RR+H RNLEL++YVA+N KI ISIA  QD+ I PH V F+
Sbjct: 87  TYDASQPAAPTLKRRQHFRNLELDKYVAKNGKIFISIALGQDKSILPHVVRFS 139

The following BLAST results are available for this feature:

BLAST of CSPI03G05540 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIG3	5.1e-07	64.81	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UNR1	2.5e-06	71.11	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4E4L2	2.5e-06	54.55	uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=...	[more]
A0A5D3DED2	7.4e-06	44.05	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BGW9	4.8e-05	52.83	(R)-mandelonitrile lyase 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CSPI03G05540 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063738.1	1.1e-06	64.81	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK10964.1 (R)-mande...	[more]
XP_016903164.1	5.2e-06	54.55	PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo]	[more]
KAA0057523.1	5.2e-06	71.11	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK08205.1 (R)-mande...	[more]
KAA0060287.1	1.5e-05	44.05	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa] >TYK22037.1 (R)-mande...	[more]
TYJ98367.1	9.8e-05	52.83	(R)-mandelonitrile lyase 1-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G05540 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05540.1	CSPI03G05540.1	mRNA