CSPI03G05420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Location	Chr3: 4468753 .. 4469723 (+)
RNA-Seq Expression	CSPI03G05420
Synteny	CSPI03G05420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGATCAAAATAAAAAGAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCTCCCTCCATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCCCAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCGGAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAAGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGAGAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAATGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCAAGGTGTAGACAAGCTATACTCGTTGCTAATTCTTTTTGAGTTATATAACAAATTGTTGAGGCAATTCATTTCTCTTTGTATAGTGTATCAGTCCATTTTTTTCACCCTAATTCAAATTTAGTTTAGATTCTGCTTTGCATCGTGTGGTTTGTCCCTAATACATATTTCCCTTCTTCCAACTATCTGTTTGCTTTAATACCTCTTTGTGGATTTCTTGTCGTTGCAAACAATAAGCAGAGAATATGAAAATACTGTTCATACTATTATTAGTACACAGAATTTTATGGATGTTAGGCCAAACAATATCAT

mRNA sequence

CAATGATCAAAATAAAAAGAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCTCCCTCCATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCCCAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCGGAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAAGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGAGAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAATGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCAAGGTGTAGACAAGCTATACTCGTTGCTAATTCTTTTTGAGTTATATAACAAATTGTTGAGGCAATTCATTTCTCTTTGTATAGTGTATCAGTCCATTTTTTTCACCCTAATTCAAATTTAGTTTAGATTCTGCTTTGCATCGTGTGGTTTGTCCCTAATACATATTTCCCTTCTTCCAACTATCTGTTTGCTTTAATACCTCTTTGTGGATTTCTTGTCGTTGCAAACAATAAGCAGAGAATATGAAAATACTGTTCATACTATTATTAGTACACAGAATTTTATGGATGTTAGGCCAAACAATATCAT

Coding sequence (CDS)

ATGATCAAAATAAAAAGAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCTCCCTCCATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCCCAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCGGAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAAGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGAGAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAATGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCAAGGTGTAGACAAGCTATACTCGTTGCTAATTCTTTTTGA

Protein sequence

MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF*

Homology

[Close]

BLAST of CSPI03G05420 vs. ExPASy TrEMBL
Match: A0A0A0L6D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081380 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKC 60
           MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIKC
Sbjct: 1   MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKC 60

Query: 61  NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK 120
           NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK
Sbjct: 61  NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK 120

Query: 121 RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV 180
           RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV
Sbjct: 121 RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV 180

Query: 181 EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF 232

[Close]

BLAST of CSPI03G05420 vs. ExPASy TrEMBL
Match: A0A1S3BT06 (uncharacterized protein LOC103493403 OS=Cucumis melo OX=3656 GN=LOC103493403 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 3.8e-107
Identity = 206/213 (96.71%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF 
Sbjct: 1   MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKYNSQDSESDPNFPSPDPNFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPETFPIEKRRRSEILRQRKPTTEIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL
Sbjct: 121 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. ExPASy TrEMBL
Match: A0A5D3C0F1 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00480 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 1.9e-106
Identity = 205/213 (96.24%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F 
Sbjct: 1   MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKYNSQDSESDPNFPSPDPKFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPETFPIEKRRRSEILRQRKPTTEIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL
Sbjct: 121 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. ExPASy TrEMBL
Match: A0A6J1EVI2 (uncharacterized protein LOC111438454 OS=Cucurbita moschata OX=3662 GN=LOC111438454 PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 4.8e-94
Identity = 181/213 (84.98%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MA  HLH L  PNP+LLLP S P+FT PLQIT KR LS+KC+S+ SESDPNFPSP+P+FG
Sbjct: 1   MACLHLHLLCAPNPLLLLPRSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPNPDFG 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPE+FPIEKRRRS+I+RQR+PS +I KPEPPNFEIGWKRTKEI++EKP+GWMIMDFL
Sbjct: 61  ALNQPESFPIEKRRRSEIVRQRRPSKDIVKPEPPNFEIGWKRTKEINLEKPVGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDL
Sbjct: 121 EKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAVKDETLSERL QAKARCRQAILVANSF
Sbjct: 181 AMVKAAVKDETLSERLAQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. ExPASy TrEMBL
Match: A0A6J1JD53 (uncharacterized protein LOC111483306 OS=Cucurbita maxima OX=3661 GN=LOC111483306 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 8.2e-94
Identity = 179/213 (84.04%), Postives = 197/213 (92.49%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MA  HLH L  PNP+LLLP S P+FT PLQIT KR LS+KC+S+ SESDPNFPSPDP+FG
Sbjct: 1   MACLHLHILCAPNPLLLLPQSQPTFTNPLQITPKRRLSLKCSSESSESDPNFPSPDPDFG 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPE+FP+EKRRRS+I+RQR+PS EI KPEPPNFEIGWKRTKEI++EKP+GWMIMDFL
Sbjct: 61  ALNQPESFPVEKRRRSEIVRQRRPSKEIVKPEPPNFEIGWKRTKEINLEKPVGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDL
Sbjct: 121 EKLEELMEREFGSTELLAKVGEIVAERAREEAEILLDDGKVEDRMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAV+DETL++RL QAKARCRQAILVANSF
Sbjct: 181 AMVKAAVQDETLTQRLAQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. NCBI nr
Match: XP_004152910.2 (uncharacterized protein LOC101210146 [Cucumis sativus] >KGN56162.1 hypothetical protein Csa_011377 [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 8.1e-120
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKC 60
           MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIKC
Sbjct: 1   MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKC 60

Query: 61  NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK 120
           NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK
Sbjct: 61  NSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWK 120

Query: 121 RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV 180
           RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV
Sbjct: 121 RTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKV 180

Query: 181 EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 EERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAILVANSF 232

[Close]

BLAST of CSPI03G05420 vs. NCBI nr
Match: XP_008452345.1 (PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo])

HSP 1 Score: 397.5 bits (1020), Expect = 7.9e-107
Identity = 206/213 (96.71%), Postives = 210/213 (98.59%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF 
Sbjct: 1   MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKYNSQDSESDPNFPSPDPNFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPETFPIEKRRRSEILRQRKPTTEIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL
Sbjct: 121 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. NCBI nr
Match: KAA0025435.1 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa] >TYK04748.1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa])

HSP 1 Score: 395.2 bits (1014), Expect = 3.9e-106
Identity = 205/213 (96.24%), Postives = 209/213 (98.12%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F 
Sbjct: 1   MASSHLHFLSTPNPILLLPQSHPSFTTPLQITSKRDLSIKYNSQDSESDPNFPSPDPKFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPETFPIEKRRRSEILRQRKPTTEIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL
Sbjct: 121 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 233
           AMVKAAVKDETLSERLGQAKARCRQAILVANSF
Sbjct: 181 AMVKAAVKDETLSERLGQAKARCRQAILVANSF 213

[Close]

BLAST of CSPI03G05420 vs. NCBI nr
Match: XP_038903493.1 (uncharacterized protein LOC120090072 isoform X2 [Benincasa hispida])

HSP 1 Score: 363.2 bits (931), Expect = 1.6e-96
Identity = 186/207 (89.86%), Postives = 198/207 (95.65%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPIL+LP S PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF 
Sbjct: 1   MASSHLHFLSTPNPILILPQSQPSFTTPLQITSKRNHSIKCNSQNSESDPNFPSPDPNFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPESFPIEKRRRSEIVRQRRPTTDIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD 
Sbjct: 121 EKLEGLMDREFGSTELLAKVGEIVAERAREEAEILLDDGKVEERMVTELFRVLKLMEMDF 180

Query: 200 AMVKAAVKDETLSERLGQAKARCRQAI 227
           AMVKAAVKDETLSERLGQAKARC   I
Sbjct: 181 AMVKAAVKDETLSERLGQAKARCSSQI 207

[Close]

BLAST of CSPI03G05420 vs. NCBI nr
Match: XP_038903492.1 (uncharacterized protein LOC120090072 isoform X1 [Benincasa hispida])

HSP 1 Score: 359.0 bits (920), Expect = 3.1e-95
Identity = 184/202 (91.09%), Postives = 196/202 (97.03%), Query Frame = 0


Query: 20  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFG 79
           MASSHLHFLSTPNPIL+LP S PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF 
Sbjct: 1   MASSHLHFLSTPNPILILPQSQPSFTTPLQITSKRNHSIKCNSQNSESDPNFPSPDPNFS 60

Query: 80  ALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFL 139
           ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGWKRTKEI++EKPIGWMIMDFL
Sbjct: 61  ALNQPESFPIEKRRRSEIVRQRRPTTDIAKPEPPNFEIGWKRTKEINLEKPIGWMIMDFL 120

Query: 140 EKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDL 199
           EKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD 
Sbjct: 121 EKLEGLMDREFGSTELLAKVGEIVAERAREEAEILLDDGKVEERMVTELFRVLKLMEMDF 180

Query: 200 AMVKAAVKDETLSERLGQAKAR 222
           AMVKAAVKDETLSERLGQAKAR
Sbjct: 181 AMVKAAVKDETLSERLGQAKAR 202

[Close]

BLAST of CSPI03G05420 vs. TAIR 10
Match: AT1G51100.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 230.3 bits (586), Expect = 1.6e-60
Identity = 136/206 (66.02%), Postives = 156/206 (75.73%), Query Frame = 0


Query: 28  LSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFP-SPDPNFGALNQPET 87
           LS+ N  + +P    SF   ++ T+K   S KC+S     D     +P P        E 
Sbjct: 12  LSSKNLHIAVPIRTNSF---VRRTTK--FSTKCSSNPESKDQFINLTPAPESINTTSAEK 71

Query: 88  FPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLM 147
           FPIEKRRRS+I+R R     I KPEPPNFEIGWKRTKEI++EKP G++IMDFLEK E LM
Sbjct: 72  FPIEKRRRSEIIRDR-TQRGIEKPEPPNFEIGWKRTKEINLEKPKGYVIMDFLEKFEALM 131

Query: 148 EREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAV 207
            REFGS ELLAK GEIVAERAREEAE+LRD+GKVEERMVTELFRVLKLMEMDLAMVKA+V
Sbjct: 132 AREFGSKELLAKAGEIVAERAREEAEVLRDEGKVEERMVTELFRVLKLMEMDLAMVKASV 191

Query: 208 KDETLSERLGQAKARCRQAILVANSF 233
           KDETLS+R+ QA+ARCRQAILVANSF
Sbjct: 192 KDETLSQRIEQARARCRQAILVANSF 211

The following BLAST results are available for this feature:

BLAST of CSPI03G05420 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6D8	3.9e-120	99.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G081380 PE=4 SV=1	[more]
A0A1S3BT06	3.8e-107	96.71	uncharacterized protein LOC103493403 OS=Cucumis melo OX=3656 GN=LOC103493403 PE=...	[more]
A0A5D3C0F1	1.9e-106	96.24	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 O...	[more]
A0A6J1EVI2	4.8e-94	84.98	uncharacterized protein LOC111438454 OS=Cucurbita moschata OX=3662 GN=LOC1114384...	[more]
A0A6J1JD53	8.2e-94	84.04	uncharacterized protein LOC111483306 OS=Cucurbita maxima OX=3661 GN=LOC111483306...	[more]

BLAST of CSPI03G05420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152910.2	8.1e-120	99.57	uncharacterized protein LOC101210146 [Cucumis sativus] >KGN56162.1 hypothetical ...	[more]
XP_008452345.1	7.9e-107	96.71	PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]	[more]
KAA0025435.1	3.9e-106	96.24	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [...	[more]
XP_038903493.1	1.6e-96	89.86	uncharacterized protein LOC120090072 isoform X2 [Benincasa hispida]	[more]
XP_038903492.1	3.1e-95	91.09	uncharacterized protein LOC120090072 isoform X1 [Benincasa hispida]	[more]

BLAST of CSPI03G05420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51100.1	1.6e-60	66.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..80
None	No IPR available	PANTHER	PTHR36719	OS01G0676200 PROTEIN	coord: 20..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05420.1	CSPI03G05420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0009570	chloroplast stroma