CSPI03G05340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 4349939 .. 4350154 (-)
RNA-Seq Expression	CSPI03G05340
Synteny	CSPI03G05340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGAGGAGGTGAATTAAGCAAAGGTTGCTATAATCATTACAGAAGAACAACGTCAATGGAAATGAAGAAGGAAAAATGGGGACTCATGGGTTTGCTTATTGGGCAGAGTCTAAGAGTGGAAGTTGAAGCCCCAATTCGGGTCAAGGCTGAAGAGAAGACATTTGGGAGTCCAAGGAAGATAGTAGTTGAGTCCCGTGTTTTAAACGCATGA

mRNA sequence

ATGGGCAGAGGAGGTGAATTAAGCAAAGGTTGCTATAATCATTACAGAAGAACAACGTCAATGGAAATGAAGAAGGAAAAATGGGGACTCATGGGTTTGCTTATTGGGCAGAGTCTAAGAGTGGAAGTTGAAGCCCCAATTCGGGTCAAGGCTGAAGAGAAGACATTTGGGAGTCCAAGGAAGATAGTAGTTGAGTCCCGTGTTTTAAACGCATGA

Coding sequence (CDS)

ATGGGCAGAGGAGGTGAATTAAGCAAAGGTTGCTATAATCATTACAGAAGAACAACGTCAATGGAAATGAAGAAGGAAAAATGGGGACTCATGGGTTTGCTTATTGGGCAGAGTCTAAGAGTGGAAGTTGAAGCCCCAATTCGGGTCAAGGCTGAAGAGAAGACATTTGGGAGTCCAAGGAAGATAGTAGTTGAGTCCCGTGTTTTAAACGCATGA

Protein sequence

MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTFGSPRKIVVESRVLNA*

Homology

[Close]

BLAST of CSPI03G05340 vs. ExPASy TrEMBL
Match: A0A0A0L2F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078810 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.2e-30
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTFGSPR 60
          MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTF SPR
Sbjct: 1  MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTFVSPR 60

Query: 61 KIVVESRVLNA 72
          KIVVESRVLNA
Sbjct: 61 KIVVESRVLNA 71

[Close]

BLAST of CSPI03G05340 vs. NCBI nr
Match: KGN56150.1 (hypothetical protein Csa_010289 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 0


Query: 1  MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTFGSPR 60
          MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTF SPR
Sbjct: 1  MGRGGELSKGCYNHYRRTTSMEMKKEKWGLMGLLIGQSLRVEVEAPIRVKAEEKTFVSPR 60

Query: 61 KIVVESRVLNA 72
          KIVVESRVLNA
Sbjct: 61 KIVVESRVLNA 71

The following BLAST results are available for this feature:

BLAST of CSPI03G05340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F9	1.2e-30	98.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078810 PE=4 SV=1	[more]

BLAST of CSPI03G05340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56150.1	2.4e-30	98.59	hypothetical protein Csa_010289 [Cucumis sativus]	[more]

BLAST of CSPI03G05340 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05340.1	CSPI03G05340.1	mRNA