CSPI03G04800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	zf-CCHC_4 domain-containing protein
Location	Chr3: 3913876 .. 3914370 (+)
RNA-Seq Expression	CSPI03G04800
Synteny	CSPI03G04800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTAAGCTTTTGGATCAATTGATAGTTTAAGAAAGATGTTGATTGTGGAAATTGTCATTGATATTAAGAAACTGATACTTCGAGTTATCAGACTCAACGTCAACGTAGATGGTTTGAAATGGGTGTGTTTGATACCGATGAAGTCTGAACGGTTGTCAAAGTTCTGTTGGCATTGTGGAATCATTGGGCATAATCTCGAGGAATGTAGTGGAAAAGTGAACGATGAAGAAGTTGGGAAAACTTTTTATAGGAAAAAGAGTTGAGTTTTATTGATTATTGCAATAAATTTTCATTTGATACAAATCATGAAGGCTTCAAAGATGATTTAGGAAACGAAGGCAATGAGAGGATGAAATAAGACTAATGAAGATTCTATTTTGAATAAAGGGAATATGATGACTCACTTTTTAAGTTTGTGAAGTTACGATTTCTTGTTCGTGTTGGAATGTTCGAGGATTGGGGATTTTTTTATATTTTGTCTTGTGATGTAGGTG

mRNA sequence

GTTTAAGCTTTTGGATCAATTGATAGTTTAAGAAAGATGTTGATTGTGGAAATTGTCATTGATATTAAGAAACTGATACTTCGAGTTATCAGACTCAACGTCAACGTAGATGGTTTGAAATGGGTGTGTTTGATACCGATGAAGTCTGAACGGTTGTCAAAGTTCTGTTGGCATTGTGGAATCATTGGGCATAATCTCGAGGAATGTAGTGGAAAAGTGAACGATGAAGAAGTTGGGAAAACTTTTTATAGGAAAAAGAGTTGAGTTTTATTGATTATTGCAATAAATTTTCATTTGATACAAATCATGAAGGCTTCAAAGATGATTTAGGAAACGAAGGCAATGAGAGGATGAAATAAGACTAATGAAGATTCTATTTTGAATAAAGGGAATATGATGACTCACTTTTTAAGTTTGTGAAGTTACGATTTCTTGTTCGTGTTGGAATGTTCGAGGATTGGGGATTTTTTTATATTTTGTCTTGTGATGTAGGTG

Coding sequence (CDS)

ATGTTGATTGTGGAAATTGTCATTGATATTAAGAAACTGATACTTCGAGTTATCAGACTCAACGTCAACGTAGATGGTTTGAAATGGGTGTGTTTGATACCGATGAAGTCTGAACGGTTGTCAAAGTTCTGTTGGCATTGTGGAATCATTGGGCATAATCTCGAGGAATGTAGTGGAAAAGTGAACGATGAAGAAGTTGGGAAAACTTTTTATAGGAAAAAGAGTTGA

Protein sequence

MLIVEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVNDEEVGKTFYRKKS*

Homology

[Close]

BLAST of CSPI03G04800 vs. ExPASy TrEMBL
Match: A0A7J8QGH1 (Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_006548 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4   VEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVND 63
           +++ IDI+K + RV+R  V+ DG + + LI  K ERL  FC+ CGIIGH L+ C+ KV++
Sbjct: 197 IKVKIDIEKPLRRVVRF-VDKDGSETIGLI--KYERLPDFCFSCGIIGHTLKTCTTKVDE 256

Query: 64  EEVGKTF 71
           EE+   +
Sbjct: 257 EELNDMY 260

[Close]

BLAST of CSPI03G04800 vs. ExPASy TrEMBL
Match: A0A7J9ANF7 (zf-CCHC_4 domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_022194 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.4e-04
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 4  VEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVND 63
          +++ IDI+K + RV+R  V+ DG + + LI  K ERL  FC+ CGIIGH L+ C  KV++
Sbjct: 34 IKVKIDIEKPLRRVVRF-VDKDGSETIGLI--KYERLPDFCFSCGIIGHTLKTCITKVDE 93

Query: 64 EEVGKTF 71
          EE+   +
Sbjct: 94 EEMNDIY 97

[Close]

BLAST of CSPI03G04800 vs. NCBI nr
Match: MBA0600360.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 55.1 bits (131), Expect = 3.1e-04
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4   VEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVND 63
           +++ IDI+K + RV+R  V+ DG + + LI  K ERL  FC+ CGIIGH L+ C+ KV++
Sbjct: 197 IKVKIDIEKPLRRVVRF-VDKDGSETIGLI--KYERLPDFCFSCGIIGHTLKTCTTKVDE 256

Query: 64  EEVGKTF 71
           EE+   +
Sbjct: 257 EELNDMY 260

[Close]

BLAST of CSPI03G04800 vs. NCBI nr
Match: PPD66832.1 (hypothetical protein GOBAR_DD36291 [Gossypium barbadense])

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-04
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 4   VEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVND 63
           +++ IDI+K + RV+R  V+ DG + + LI  K ERL  FC+ CGIIGH L+ C  KV++
Sbjct: 182 IKVKIDIEKPLRRVVRF-VDKDGSETIGLI--KYERLPDFCFSCGIIGHTLKTCITKVDE 241

Query: 64  EEVGKTF 71
           EE+   +
Sbjct: 242 EEMNDIY 245

[Close]

BLAST of CSPI03G04800 vs. NCBI nr
Match: MBA0725626.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-04
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 4  VEIVIDIKKLILRVIRLNVNVDGLKWVCLIPMKSERLSKFCWHCGIIGHNLEECSGKVND 63
          +++ IDI+K + RV+R  V+ DG + + LI  K ERL  FC+ CGIIGH L+ C  KV++
Sbjct: 34 IKVKIDIEKPLRRVVRF-VDKDGSETIGLI--KYERLPDFCFSCGIIGHTLKTCITKVDE 93

Query: 64 EEVGKTF 71
          EE+   +
Sbjct: 94 EEMNDIY 97

The following BLAST results are available for this feature:

BLAST of CSPI03G04800 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J8QGH1	1.5e-04	44.78	Uncharacterized protein (Fragment) OS=Gossypium raimondii OX=29730 GN=Gorai_0065...	[more]
A0A7J9ANF7	3.4e-04	44.78	zf-CCHC_4 domain-containing protein (Fragment) OS=Gossypium laxum OX=34288 GN=Go...	[more]

BLAST of CSPI03G04800 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0600360.1	3.1e-04	44.78	hypothetical protein [Gossypium raimondii]	[more]
PPD66832.1	7.0e-04	44.78	hypothetical protein GOBAR_DD36291 [Gossypium barbadense]	[more]
MBA0725626.1	7.0e-04	44.78	hypothetical protein [Gossypium laxum]	[more]

BLAST of CSPI03G04800 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 32..58 e-value: 3.2E-7 score: 29.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04800.1	CSPI03G04800.1	mRNA