CSPI03G04630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glycine-rich cell wall structural protein-like
Location	Chr3: 3762907 .. 3763503 (-)
RNA-Seq Expression	CSPI03G04630
Synteny	CSPI03G04630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGAAGGATCTAATGCTTTTACTATCAAATTAGAGCAGAGAAAAAAAAAAGTGTCTTTAAGAAACCCCATCTCATATTATAGTTTTTCGTATATTATAGTTTTTGCATGTGCAATAATGTGTTTGGTGTTTGTTGTATTAAAATTAGAATTAGGTTCATATGTGAAAAAGCTCTCTCTTTTAGCTCACAATTTCTTATATGCCTAATTGTAATTTCCAAGAAGATAAAATATTTTTAAAAAATT

mRNA sequence

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGAAGGATCTAATGCTTTTACTATCAAATTAGAGCAGAGAAAAAAAAAAGTGTCTTTAAGAAACCCCATCTCATATTATAGTTTTTCGTATATTATAGTTTTTGCATGTGCAATAATGTGTTTGGTGTTTGTTGTATTAAAATTAGAATTAGGTTCATATGTGAAAAAGCTCTCTCTTTTAGCTCACAATTTCTTATATGCCTAATTGTAATTTCCAAGAAGATAAAATATTTTTAAAAAATT

Coding sequence (CDS)

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGAAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTTCATCGTCCCAGATTTGGAGGTGGCGGATTGGGTGGAGGAGGTGGTGGAGGATTCGGTGGAGGTGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTCGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGGTTTGGTGGGGGAGGTGGAGGTGGACTTGGTGGTGGAGCAGGCGGAGGATTCGGTGGTGGGGCCGGTGCAGGAGGTGGATTCCCTTGA

Protein sequence

MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGGLGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGFP*

Homology

[Close]

BLAST of CSPI03G04630 vs. ExPASy TrEMBL
Match: A0A0A0L2A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 115
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAG 114

[Close]

BLAST of CSPI03G04630 vs. ExPASy TrEMBL
Match: A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-23
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGA----GGGFGGGAGAGGG 117
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGG+    G GFGGG+G GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

[Close]

BLAST of CSPI03G04630 vs. ExPASy TrEMBL
Match: A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.5e-22
Identity = 116/156 (74.36%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGG----------------------------------- 119
           LGGGSGGGFGGGSGFGGGVGGGAGG                                   
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

[Close]

BLAST of CSPI03G04630 vs. ExPASy TrEMBL
Match: A0A6J1DAT8 (glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-12
Identity = 95/121 (78.51%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKI+FLV L AFL TTS ARKL+T SF D+KFFHRP FG    GGGGGGGFGGGGGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFG----GGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGG-----GGGGGLGGGAGGGFGGGAGAGG 117
           L    GGGFGGGSGFGGG GGGAGGG GGGFGG     GGGGG+GGGAGGGFGGGAGAGG
Sbjct: 61  L----GGGFGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGG 113

[Close]

BLAST of CSPI03G04630 vs. ExPASy TrEMBL
Match: A0A6P8EH97 (glycine-rich protein 5-like OS=Punica granatum OX=22663 GN=LOC116214803 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 2   ASKIVFLVFLGAFLFTTSGARKL------STASFQDEK-FFHRPRFGGGGLGGGGGGGFG 61
           +SK++FLV LGA + +   +R L       +ASF++EK F+H P+FGGGGLGGGGGGGFG
Sbjct: 3   SSKLLFLVLLGALVCSACSSRGLLGEKVSGSASFEEEKTFYHHPKFGGGGLGGGGGGGFG 62

Query: 62  GGGGGGLGGGSGGGFGGGSGFGGGVGGGA--GGGGGGGFGGGGGGGLGGGAGGGFGGGAG 117
           GGG GGLGGGS  GFGGG+G GGG+GGG   GGGGGGGFGGGGGGG+GGGAGGGFGGGAG
Sbjct: 63  GGGRGGLGGGS--GFGGGAGAGGGLGGGGGLGGGGGGGFGGGGGGGVGGGAGGGFGGGAG 122

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 3.6e-23
Identity = 111/120 (92.50%), Postives = 114/120 (95.00%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPR+GGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRYGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGA----GGGFGGGAGAGGG 117
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGG+    G GFGGG+G GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGG 120

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: XP_011650511.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-23
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFF RPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFRRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGG 117
           LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGG+  GFGGGAG GGG
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGGGGGGGLGGGS--GFGGGAGFGGG 114

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 116/156 (74.36%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKIVFLVFLGAFLF+TSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGG----------------------------------- 119
           LGGGSGGGFGGGSGFGGGVGGGAGG                                   
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: XP_022151305.1 (glycine-rich protein 5 [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 95/121 (78.51%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 1   MASKIVFLVFLGAFLFTTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60
           MASKI+FLV L AFL TTS ARKL+T SF D+KFFHRP FG    GGGGGGGFGGGGGGG
Sbjct: 1   MASKILFLVLLSAFLCTTSWARKLTTTSFHDQKFFHRPGFG----GGGGGGGFGGGGGGG 60

Query: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGGGFGG-----GGGGGLGGGAGGGFGGGAGAGG 117
           L    GGGFGGGSGFGGG GGGAGGG GGGFGG     GGGGG+GGGAGGGFGGGAGAGG
Sbjct: 61  L----GGGFGGGSGFGGGAGGGAGGGAGGGFGGGGGGLGGGGGIGGGAGGGFGGGAGAGG 113

[Close]

BLAST of CSPI03G04630 vs. NCBI nr
Match: OWM85792.1 (hypothetical protein CDL15_Pgr012042 [Punica granatum])

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-06
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 2   ASKIVFLVFLGAFLFTTSGARKL------STASFQDEK-FFHRPRFGGGGLGGGGGGGFG 61
           +SK++FLV LGA + +   +R L       +ASF++EK F+H P+FGGGGLGGGGGGGFG
Sbjct: 3   SSKLLFLVLLGALVCSACSSRGLLGEKVSGSASFEEEKTFYHHPKFGGGGLGGGGGGGFG 62

Query: 62  GGGGGGLGGGSGGGFGGGSGFGGGVGGGA--GGGGGGGFGGGGGGGLGGGAGGGFGGGAG 117
           GGG GGLGGGS  GFGGG+G GGG+GGG   GGGGGGGFGGGGGGG+GGGAGGGFGGGAG
Sbjct: 63  GGGRGGLGGGS--GFGGGAGAGGGLGGGGGLGGGGGGGFGGGGGGGVGGGAGGGFGGGAG 122

The following BLAST results are available for this feature:

BLAST of CSPI03G04630 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2A7	1.1e-25	98.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064240 PE=4 SV=1	[more]
A0A5A7VJD1	1.7e-23	92.50	Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A5D3BB90	1.5e-22	74.36	Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1DAT8	2.4e-12	78.51	glycine-rich protein 5 OS=Momordica charantia OX=3673 GN=LOC111019269 PE=4 SV=1	[more]
A0A6P8EH97	5.1e-07	70.16	glycine-rich protein 5-like OS=Punica granatum OX=22663 GN=LOC116214803 PE=4 SV=...	[more]

BLAST of CSPI03G04630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0065825.1	3.6e-23	92.50	glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa]	[more]
XP_011650511.1	4.7e-23	94.83	glycine-rich cell wall structural protein-like [Cucumis sativus]	[more]
KAA0065824.1	3.1e-22	74.36	glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96...	[more]
XP_022151305.1	4.9e-12	78.51	glycine-rich protein 5 [Momordica charantia]	[more]
OWM85792.1	1.1e-06	70.16	hypothetical protein CDL15_Pgr012042 [Punica granatum]	[more]

BLAST of CSPI03G04630 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04630.1	CSPI03G04630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033512	L-lysine catabolic process to acetyl-CoA via saccharopine
biological_process	GO:0006099	tricarboxylic acid cycle
cellular_component	GO:0045252	oxoglutarate dehydrogenase complex
molecular_function	GO:0004149	dihydrolipoyllysine-residue succinyltransferase activity