Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAAATTGAAGGCCGTTTTTCAACAAGCAGTCCATTCATCTCCAGCTTTGACTTTTTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACCACCACCAAGTCCGCCACCAGAGCCTCCTCCGAACCCTGCTCCACCTCCAAAACCACTCCCTCCGCCTAGTCCACCACCACCTCCGCCACCAAACCCTCCTCCACCACCACCACCAGCTCCACCACCAACACCGCCACCAAATCCAGATCCTCCACCAAAACCACCTCCCGAACCACCACCTAACCCTCCGCCTCCACCTCCACCGAATCCCCCCCCACCTCCTCCACCCAATCCGCCACCTCCAAATCTGGGACGACGGAAGAACTTCTCATCTTGA mRNA sequence ATGCAAATTGAAGGCCGTTTTTCAACAAGCAGTCCATTCATCTCCAGCTTTGACTTTTTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACCACCACCAAGTCCGCCACCAGAGCCTCCTCCGAACCCTGCTCCACCTCCAAAACCACTCCCTCCGCCTAGTCCACCACCACCTCCGCCACCAAACCCTCCTCCACCACCACCACCAGCTCCACCACCAACACCGCCACCAAATCCAGATCCTCCACCAAAACCACCTCCCGAACCACCACCTAACCCTCCGCCTCCACCTCCACCGAATCCCCCCCCACCTCCTCCACCCAATCCGCCACCTCCAAATCTGGGACGACGGAAGAACTTCTCATCTTGA Coding sequence (CDS) ATGCAAATTGAAGGCCGTTTTTCAACAAGCAGTCCATTCATCTCCAGCTTTGACTTTTTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCACCACCACCAAGTCCGCCACCAGAGCCTCCTCCGAACCCTGCTCCACCTCCAAAACCACTCCCTCCGCCTAGTCCACCACCACCTCCGCCACCAAACCCTCCTCCACCACCACCACCAGCTCCACCACCAACACCGCCACCAAATCCAGATCCTCCACCAAAACCACCTCCCGAACCACCACCTAACCCTCCGCCTCCACCTCCACCGAATCCCCCCCCACCTCCTCCACCCAATCCGCCACCTCCAAATCTGGGACGACGGAAGAACTTCTCATCTTGA Protein sequence MQIEGRFSTSSPFISSFDFFIXXXXXXXXXXXXXXXXXXXXPPPPSPPPEPPPNPAPPPKPLPPPSPPPPPPPNPPPPPPPAPPPTPPPNPDPPPKPPPEPPPNPPPPPPPNPPPPPPPNPPPPNLGRRKNFSS*
Homology
BLAST of CSPI03G04620 vs. NCBI nr
Match: KAE8650119.1 (hypothetical protein Csa_009728 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 1.4e-15 Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0
Query: 42 PPPPSPPPEPPPNPAPPPKPLPPPSPPPPPPPNPPPPPPPAPPPTPPPNPDPPPKPPPEP 101
PPPPSPPPEPPPNPAPPPKPLPPPSPPPPPPPNPPPPPPPAPPPTPPPNPDPPPKPPPEP
Sbjct: 79 PPPPSPPPEPPPNPAPPPKPLPPPSPPPPPPPNPPPPPPPAPPPTPPPNPDPPPKPPPEP 138
Query: 102 PPNPPPPPPPNPPPPPPPNPPPPNLGRRKNFSS 135
PPNPPPPPPPNPPPPPPPNPPPPNLGRRKNFSS
Sbjct: 139 PPNPPPPPPPNPPPPPPPNPPPPNLGRRKNFSS 171
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650119.1 | 1.4e-15 | 100.00 | hypothetical protein Csa_009728 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR01217 | PRICHEXTENSN | coord: 60..85
score: 36.92
coord: 40..57
score: 52.22
coord: 22..38
score: 44.71 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 18..106 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..114 |
Relationships
The following mRNA feature(s) are a part of this gene:
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