CSPI03G04600 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04600
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glycine-rich cell wall structural protein-like
Location	Chr3: 3743895 .. 3744614 (+)
RNA-Seq Expression	CSPI03G04600
Synteny	CSPI03G04600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGCAAGCTTTTCTTTCTAATGCTCCTTGGCGTCTTCTTTTGCGCCACTGGAGCTCGAAAGCTTGCCCATGATCCTTTAAAAGATGAGAAGTTTTTCCACGGTGGTGGATTAGGTGGTGGAGGCGGTGGCGGGCTTGGTGGAGGTGGAGGTGCAGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGGGGGTCTGGATTTGGTGGGGGTGCTGGTGGTGGGTATGGTGGTGGTGGAGGGTTAGGAGGTGGATCCGGTGGAGGGTTTGGTTCAGGTGGTGGATTTGGTGGAGGTTATGGTAGTGGAGGGGGTGGAGGGTTTGGTGGCGGCAGTGGTGGGGGTGGTGGACTTGGTGGAGGATACGGTGGAGGTGGAGGTGTTGGGAGTGGTGGTGGGTTTGGAGAATTTCCTTGAGAAAAATTAAACAAAGCACGTTTGCATACTATAAACATATATGACGACTACTATATATTTGTATAATGTGTTTCTTTAAACCAATGCTAGAGTGGAAAAATGGAACCTTCAACTTTAAAGTTGTAGTACCAACTTATGTTAGTTGAACTATGTTCATATTAGCTCTACAATGTGTGACTGTGTATGTTTGCGTACATGTATGATGATGAGAGTTTAACGAGGAGCAAGTGTATCTCAACTCTCTTTGTAAGTTTGTTTTCCTACCAGCAGTATACAAAGTATTTTAAAGACAATCAAATC

mRNA sequence

ATGGCTTGCAAGCTTTTCTTTCTAATGCTCCTTGGCGTCTTCTTTTGCGCCACTGGAGCTCGAAAGCTTGCCCATGATCCTTTAAAAGATGAGAAGTTTTTCCACGGTGGTGGATTAGGTGGTGGAGGCGGTGGCGGGCTTGGTGGAGGTGGAGGTGCAGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGGGGGTCTGGATTTGGTGGGGGTGCTGGTGGTGGGTATGGTGGTGGTGGAGGGTTAGGAGGTGGATCCGGTGGAGGGTTTGGTTCAGGTGGTGGATTTGGTGGAGGTTATGGTAGTGGAGGGGGTGGAGGGTTTGGTGGCGGCAGTGGTGGGGGTGGTGGACTTGGTGGAGGATACGGTGGAGGTGGAGGTGTTGGGAGTGGTGGTGGGTTTGGAGAATTTCCTTGAGAAAAATTAAACAAAGCACGTTTGCATACTATAAACATATATGACGACTACTATATATTTGTATAATGTGTTTCTTTAAACCAATGCTAGAGTGGAAAAATGGAACCTTCAACTTTAAAGTTGTAGTACCAACTTATGTTAGTTGAACTATGTTCATATTAGCTCTACAATGTGTGACTGTGTATGTTTGCGTACATGTATGATGATGAGAGTTTAACGAGGAGCAAGTGTATCTCAACTCTCTTTGTAAGTTTGTTTTCCTACCAGCAGTATACAAAGTATTTTAAAGACAATCAAATC

Coding sequence (CDS)

ATGGCTTGCAAGCTTTTCTTTCTAATGCTCCTTGGCGTCTTCTTTTGCGCCACTGGAGCTCGAAAGCTTGCCCATGATCCTTTAAAAGATGAGAAGTTTTTCCACGGTGGTGGATTAGGTGGTGGAGGCGGTGGCGGGCTTGGTGGAGGTGGAGGTGCAGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGGGGGTCTGGATTTGGTGGGGGTGCTGGTGGTGGGTATGGTGGTGGTGGAGGGTTAGGAGGTGGATCCGGTGGAGGGTTTGGTTCAGGTGGTGGATTTGGTGGAGGTTATGGTAGTGGAGGGGGTGGAGGGTTTGGTGGCGGCAGTGGTGGGGGTGGTGGACTTGGTGGAGGATACGGTGGAGGTGGAGGTGTTGGGAGTGGTGGTGGGTTTGGAGAATTTCCTTGA

Protein sequence

MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGGSGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLGGGYGGGGGVGSGGGFGEFP*

Homology

[Close]

BLAST of CSPI03G04600 vs. ExPASy TrEMBL
Match: A0A0A0L4Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064230 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.6e-36
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60
           MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG
Sbjct: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60

Query: 61  SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG 120
           SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG
Sbjct: 61  SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG 120

Query: 121 GGYGGGGGVGSGGGFGEFP 140
           GGY  GGGVGSGGGFGEFP
Sbjct: 121 GGY--GGGVGSGGGFGEFP 137

[Close]

BLAST of CSPI03G04600 vs. ExPASy TrEMBL
Match: A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 100/146 (68.49%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 1   MACKLFFLMLLGVF-FCATGARKLAHDPLKDEKFFH-----GGGLGGGGGGGLGGGGGAG 60
           MA K+ FL+ LG F F  +GARKL+    +DEKFFH     GGGLGGGGGGG GGGGG G
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  GGFGGGSGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGY----GSGGGGGFG 120
            G G G GFGGGSGFGGG GGG GGGGG GGG GGG G G GFGGG     GSGGGGG G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

Query: 121 GGSGGGGGLGGGYGGGGGVGSGGGFG 137
           GG+GGGGG GGG GGG G G+GGGFG
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFG 146

[Close]

BLAST of CSPI03G04600 vs. NCBI nr
Match: XP_031737995.1 (glycine-rich protein 5 [Cucumis sativus] >KGN56074.1 hypothetical protein Csa_011582 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 7.5e-36
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60
           MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG
Sbjct: 1   MACKLFFLMLLGVFFCATGARKLAHDPLKDEKFFHGGGLGGGGGGGLGGGGGAGGGFGGG 60

Query: 61  SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG 120
           SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG
Sbjct: 61  SGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGYGSGGGGGFGGGSGGGGGLG 120

Query: 121 GGYGGGGGVGSGGGFGEFP 140
           GGY  GGGVGSGGGFGEFP
Sbjct: 121 GGY--GGGVGSGGGFGEFP 137

[Close]

BLAST of CSPI03G04600 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-05
Identity = 100/146 (68.49%), Postives = 107/146 (73.29%), Query Frame = 0


Query: 1   MACKLFFLMLLGVF-FCATGARKLAHDPLKDEKFFH-----GGGLGGGGGGGLGGGGGAG 60
           MA K+ FL+ LG F F  +GARKL+    +DEKFFH     GGGLGGGGGGG GGGGG G
Sbjct: 1   MASKIVFLVFLGAFLFSTSGARKLSTASFQDEKFFHRPRFGGGGLGGGGGGGFGGGGGGG 60

Query: 61  GGFGGGSGFGGGSGFGGGAGGGYGGGGGLGGGSGGGFGSGGGFGGGY----GSGGGGGFG 120
            G G G GFGGGSGFGGG GGG GGGGG GGG GGG G G GFGGG     GSGGGGG G
Sbjct: 61  LGGGSGGGFGGGSGFGGGVGGGAGGGGGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLG 120

Query: 121 GGSGGGGGLGGGYGGGGGVGSGGGFG 137
           GG+GGGGG GGG GGG G G+GGGFG
Sbjct: 121 GGAGGGGGFGGGGGGGLGGGAGGGFG 146

The following BLAST results are available for this feature:

BLAST of CSPI03G04600 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Y2	3.6e-36	98.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G064230 PE=4 SV=1	[more]
A0A5D3BB90	5.1e-06	68.49	Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of CSPI03G04600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737995.1	7.5e-36	98.56	glycine-rich protein 5 [Cucumis sativus] >KGN56074.1 hypothetical protein Csa_01...	[more]
KAA0065824.1	1.0e-05	68.49	glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96...	[more]

BLAST of CSPI03G04600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 138..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04600.1	CSPI03G04600.1	mRNA