CSPI03G04270 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04270
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Nuclear transcription factor Y subunit B-9
Location	Chr3: 3491286 .. 3492005 (+)
RNA-Seq Expression	CSPI03G04270
Synteny	CSPI03G04270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTATCTTGATGAATCTGAATTTGAAGTACTTGTGTCGTTATTCAGGACTGAACACGATGCTGACCCCAAACAACGCAACCTCCATCAACAGCAATCCAAACACCAATCACCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGGTTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

mRNA sequence

ATGAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTATCTTGATGAATCTGAATTTGAAGTACTTGTGTCGTTATTCAGGACTGAACACGATGCTGACCCCAAACAACGCAACCTCCATCAACAGCAATCCAAACACCAATCACCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGGTTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Coding sequence (CDS)

ATGAAGGAAGGAAATGAATATGGATATTTTTATGTATATGTTATCTTGATGAATCTGAATTTGAAGTACTTGTGTCGTTATTCAGGACTGAACACGATGCTGACCCCAAACAACGCAACCTCCATCAACAGCAATCCAAACACCAATCACCATCTCTCGAACGGAGGAACCTCCATTGGCAACTCCTCAGCTACCAGCCCCCTCTCGGTCGCCGCCACTGCCAACAATAATGAGCAAAACCAACAATGCATGGTGCGAGAACAAGACCAATACATGCCGATGGCTAATGTGATACGAATCATGAAGCGGATTTTACCCTCCCATGCAAAAATATCCGACGACACCAAAGAGACCATCCAAGAATGTGTGTCGGAGTACATTAGCTTCATCACTAGCGAGGCGAACGAACGATGCCACCGGGAGCAACGCAAGACGGTGACTGCAGAGGATGTTCTTTGGGCTATGGGGAAGTTAGGTTTTGACAACTACATAGAACCGCTAACTGTTTTCCTTAACCGCTATCGTGAGTCGGAGAGTATTCGTACTGAACCAATGTTGAGGCGCAATGTGGGTTATGGGGCACAAGTGGGGATGATATCACCGTATGGGCAGGCGTTTCAGATAGGGCAAGTCCCTGCAGGGATGTTTGATGCAATGGGTGGATACTATGGTGGAGGAGGGAGCGGTGGGCCGAGCGCAGGGAACAACAGCCAGCTTTGA

Protein sequence

MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL*

Homology

[Close]

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot
Match: Q9SFD8 (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NFYB9 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-45
Identity = 104/180 (57.78%), Postives = 120/180 (66.67%), Query Frame = 0


Query: 65  TSPLSVAATANNN-----EQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETI 124
           TS + VA   + N     +Q   C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETI
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 125 QECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE- 184
           QECVSEYISF+T EANERC REQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E 
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 185 ----SIRTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFD---AMGG--YYGGGGSG 230
               ++R EP   R    G  +G   P       G    GM D    MGG  YY  G SG
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSSG 211

[Close]

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot
Match: Q84W66 (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 174.1 bits (440), Expect = 1.9e-42
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 73  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 132
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 133 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 182
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 75  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 134
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 135 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVGY 194
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT        G 
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT--------GL 132

Query: 195 G-AQVGMISPYGQAFQIGQVPAGMFDAM---GGYYGGGG 228
           G  Q G           G+V     DA+   GG+YGGGG
Sbjct: 133 GRPQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 86  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 145
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 146 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRR--NVGYGAQVGMISPYG 205
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T    R+    G G   G  S  G
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAGSGSG 139

Query: 206 QAFQIGQVPAGMFDAMG 221
            A   G    GM   MG
Sbjct: 140 GAPMYG---GGMVTTMG 153

[Close]

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot
Match: Q60EQ4 (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-31
Identity = 58/94 (61.70%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 85  VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRK 144
           VREQD+++P+AN+ RIMK+ +P++ KI+ D KET+QECVSE+ISFITSEA+++C RE+RK
Sbjct: 36  VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95

Query: 145 TVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE 179
           T+  +D+LWAM  LGF++YIEPL V+L +YRE E
Sbjct: 96  TINGDDLLWAMATLGFEDYIEPLKVYLQKYREME 129

[Close]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL
Match: A0A0A0L2U1 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G049440 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 4.2e-125
Identity = 233/239 (97.49%), Postives = 235/239 (98.33%), Query Frame = 0


Query: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNATSINSNPNTNHHLSNGGTSIG 60
           MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNN TSINSNPNTN HLSNGGTSIG
Sbjct: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIG 60

Query: 61  NSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120
           NSSATSPLSVAATANNNEQNQQC+VREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ
Sbjct: 61  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120

Query: 121 ECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 180
           ECVSEYISFITSEANERC REQRKTVTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESI 180

Query: 181 RTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           RTEPMLRRNV YGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL
Match: A0A0A0L4W1 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G055940 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.5e-98
Identity = 194/239 (81.17%), Postives = 200/239 (83.68%), Query Frame = 0


Query: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNATSINSNPNTNHHLSNGGTSIG 60
           +KEGNEYGYFYVYV+LMNLNL+YLCRYS LN MLTPNN  SIN+NPNTNHHLS+GGTSIG
Sbjct: 12  IKEGNEYGYFYVYVLLMNLNLQYLCRYSELNMMLTPNNPNSINNNPNTNHHLSDGGTSIG 71

Query: 61  NSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120
           NSSATSPLSVAATANNNEQNQQC+VREQDQYMPMAN                        
Sbjct: 72  NSSATSPLSVAATANNNEQNQQCLVREQDQYMPMAN------------------------ 131

Query: 121 ECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 180
                YISFITSEANERC REQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI
Sbjct: 132 -----YISFITSEANERCQREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 191

Query: 181 RTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           RTEPMLRRNV YG QVGMISPYGQAFQIG VPAGMFDAMGGYYGGGGS GPS GNNSQL
Sbjct: 192 RTEPMLRRNVDYGPQVGMISPYGQAFQIGHVPAGMFDAMGGYYGGGGSCGPSTGNNSQL 221

[Close]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL
Match: A0A5D3CPF3 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00390 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 188/209 (89.95%), Postives = 196/209 (93.78%), Query Frame = 0


Query: 33  MLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 92
           M+TPN ATSINS PN+NHHLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINSTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYM 61

Query: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 152
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 153 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYGQAFQIGQ 212
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNV YG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           VPAGMFDAMGGYYGGGG GGPSAGN SQL
Sbjct: 182 VPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL
Match: A0A1S3BKV5 (nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC103491142 PE=3 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 2.8e-97
Identity = 187/209 (89.47%), Postives = 196/209 (93.78%), Query Frame = 0


Query: 33  MLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 92
           M+TPN ATSIN+ PN+NHHLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINNTPNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYM 61

Query: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 152
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 153 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYGQAFQIGQ 212
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNV YG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           VPAGMFDAMGGYYGGGG GGPSAGN SQL
Sbjct: 182 VPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL
Match: A0A5A7VC19 (Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00440 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.8e-96
Identity = 187/209 (89.47%), Postives = 195/209 (93.30%), Query Frame = 0


Query: 33  MLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 92
           M+TPN ATSINS  N+NHHLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MVTPNKATSINSTLNSNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVREQDQYM 61

Query: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 152
           P+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVTAEDVL
Sbjct: 62  PIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVL 121

Query: 153 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYGQAFQIGQ 212
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNV YG QVGMISPYGQAFQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQAFQIGH 181

Query: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           VPAGMFDAMGGYYGGGG GGPSAGN SQL
Sbjct: 182 VPAGMFDAMGGYYGGGGGGGPSAGNGSQL 210

[Close]

BLAST of CSPI03G04270 vs. NCBI nr
Match: XP_031738747.1 (nuclear transcription factor Y subunit B-9-like [Cucumis sativus])

HSP 1 Score: 463.4 bits (1191), Expect = 1.2e-126
Identity = 236/239 (98.74%), Postives = 236/239 (98.74%), Query Frame = 0


Query: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNATSINSNPNTNHHLSNGGTSIG 60
           MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNN TSINSNPNTN HLSNGGTSIG
Sbjct: 1   MKEGNEYGYFYVYVILMNLNLKYLCRYSGLNTMLTPNNPTSINSNPNTNQHLSNGGTSIG 60

Query: 61  NSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120
           NSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ
Sbjct: 61  NSSATSPLSVAATANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQ 120

Query: 121 ECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 180
           ECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI
Sbjct: 121 ECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESI 180

Query: 181 RTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           RTEPMLRRNV YGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 181 RTEPMLRRNVDYGAQVGMISPYGQAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 239

[Close]

BLAST of CSPI03G04270 vs. NCBI nr
Match: KAE8650108.1 (hypothetical protein Csa_010418 [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 2.3e-109
Identity = 208/211 (98.58%), Postives = 208/211 (98.58%), Query Frame = 0


Query: 29  GLNTMLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 88
           GLNTMLTPNN TSINSNPNTN HLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ
Sbjct: 21  GLNTMLTPNNPTSINSNPNTNQHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQ 80

Query: 89  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 148
           DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA
Sbjct: 81  DQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTA 140

Query: 149 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVGYGAQVGMISPYGQAFQI 208
           EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNV YGAQVGMISPYGQAFQI
Sbjct: 141 EDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVDYGAQVGMISPYGQAFQI 200

Query: 209 GQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           GQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 201 GQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 231

[Close]

BLAST of CSPI03G04270 vs. NCBI nr
Match: KAE8650109.1 (hypothetical protein Csa_010950 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 7.1e-103
Identity = 198/216 (91.67%), Postives = 205/216 (94.91%), Query Frame = 0


Query: 26  RYSGLNTMLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMV 85
           R+ GLN MLTPNN TSIN+NPNTNHHLS+GGTSIGNSSATSPLSVAATA+NN+QNQQC+V
Sbjct: 8   RHQGLNMMLTPNNPTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATASNNQQNQQCLV 67

Query: 86  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 145
           REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKT
Sbjct: 68  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKT 127

Query: 146 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYG 205
           VTAEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEPM RRNV YG QVGMISPYG
Sbjct: 128 VTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMWRRNVDYGPQVGMISPYG 187

Query: 206 QAFQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           Q FQIG VPAGMFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 188 QGFQIGHVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 223

[Close]

BLAST of CSPI03G04270 vs. NCBI nr
Match: XP_031738739.1 (nuclear transcription factor Y subunit B-9-like [Cucumis sativus] >KAE8650107.1 hypothetical protein Csa_009663 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 5.1e-101
Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 0


Query: 33  MLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVREQDQYM 92
           MLTPNN TSIN+NPNTNHHLS+GGTSIGNSSATSPLSVAATANNNEQNQQC+VREQDQYM
Sbjct: 2   MLTPNNQTSINNNPNTNHHLSDGGTSIGNSSATSPLSVAATANNNEQNQQCLVREQDQYM 61

Query: 93  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVTAEDVL 152
           PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERC REQRKTVTAEDVL
Sbjct: 62  PMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCQREQRKTVTAEDVL 121

Query: 153 WAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYGQAFQIGQ 212
           WAMGKLGFD+YIEPLTVFLNRYRESES  IRTEPMLRRNV YG QVGMISPYGQ FQIG 
Sbjct: 122 WAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPMLRRNVDYGPQVGMISPYGQGFQIGH 181

Query: 213 VPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           VPA MFDAMGGYYGGGGSGGPSAGNNSQL
Sbjct: 182 VPAVMFDAMGGYYGGGGSGGPSAGNNSQL 210

[Close]

BLAST of CSPI03G04270 vs. NCBI nr
Match: KAE8650106.1 (hypothetical protein Csa_009480 [Cucumis sativus])

HSP 1 Score: 374.0 bits (959), Expect = 9.6e-100
Identity = 193/214 (90.19%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 28  SGLNTMLTPNNATSINSNPNTNHHLSNGGTSIGNSSATSPLSVAATANNNEQNQQCMVRE 87
           SGLN MLTPN  TSIN+ PNTNHHLSNGGT+ GNSSATSPLSVAATANNNEQNQQC+VRE
Sbjct: 27  SGLNMMLTPNKPTSINNTPNTNHHLSNGGTATGNSSATSPLSVAATANNNEQNQQCVVRE 86

Query: 88  QDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKTVT 147
           QDQYMP+ANVIRIM+RILPSHAKISDD KETIQECVSEYISFIT EANERC REQRKTVT
Sbjct: 87  QDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVT 146

Query: 148 AEDVLWAMGKLGFDNYIEPLTVFLNRYRESES--IRTEPMLRRNVGYGAQVGMISPYGQA 207
           AEDVLWAMGKLGFD+YIEPLTVFLNRYRESES  IRTEP+LRRNV YG QVGMISPYGQA
Sbjct: 147 AEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRNVDYGPQVGMISPYGQA 206

Query: 208 FQIGQVPAGMFDAMGGYYGGGGSGGPSAGNNSQL 240
           FQIG VPAGMFDAMGGYYGGGGSGGPSAGN SQL
Sbjct: 207 FQIGHVPAGMFDAMGGYYGGGGSGGPSAGNGSQL 240

[Close]

BLAST of CSPI03G04270 vs. TAIR 10
Match: AT1G21970.1 (Histone superfamily protein )

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-46
Identity = 104/180 (57.78%), Postives = 120/180 (66.67%), Query Frame = 0


Query: 65  TSPLSVAATANNN-----EQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETI 124
           TS + VA   + N     +Q   C+ REQDQYMP+ANVIRIM++ LPSHAKISDD KETI
Sbjct: 32  TSSVVVAGAGDKNNGIVVQQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETI 91

Query: 125 QECVSEYISFITSEANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESE- 184
           QECVSEYISF+T EANERC REQRKT+TAED+LWAM KLGFDNY++PLTVF+NRYRE E 
Sbjct: 92  QECVSEYISFVTGEANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIET 151

Query: 185 ----SIRTEPMLRRNVGYGAQVGMISPYGQAFQIGQVPAGMFD---AMGG--YYGGGGSG 230
               ++R EP   R    G  +G   P       G    GM D    MGG  YY  G SG
Sbjct: 152 DRGSALRGEPPSLRQTYGGNGIGFHGPSHGLPPPGPYGYGMLDQSMVMGGGRYYQNGSSG 211

[Close]

BLAST of CSPI03G04270 vs. TAIR 10
Match: AT5G47670.1 (nuclear factor Y, subunit B6 )

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 73  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 132
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 46  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 105

Query: 133 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 182
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 106 EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 152

[Close]

BLAST of CSPI03G04270 vs. TAIR 10
Match: AT5G47670.2 (nuclear factor Y, subunit B6 )

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43
Identity = 84/109 (77.06%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 73  TANNNEQNQQCMVREQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 132
           T+N  E  ++C VREQD++MP+ANVIRIM+RILP+HAKISDD+KETIQECVSEYISFIT 
Sbjct: 17  TSNGGE--EECTVREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITG 76

Query: 133 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIR 182
           EANERC REQRKT+TAEDVLWAM KLGFD+YIEPLT++L+RYRE E  R
Sbjct: 77  EANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 123

[Close]

BLAST of CSPI03G04270 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 138.3 bits (347), Expect = 8.3e-33
Identity = 79/159 (49.69%), Postives = 106/159 (66.67%), Query Frame = 0


Query: 75  NNNEQNQQCMV--REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITS 134
           N N QN Q  +  REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISF+T 
Sbjct: 13  NGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTG 72

Query: 135 EANERCHREQRKTVTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRRNVGY 194
           EA+++C +E+RKT+  +D+LWAM  LGF++Y+EPL V+L R+RE E  RT        G 
Sbjct: 73  EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERT--------GL 132

Query: 195 G-AQVGMISPYGQAFQIGQVPAGMFDAM---GGYYGGGG 228
           G  Q G           G+V     DA+   GG+YGGGG
Sbjct: 133 GRPQTG-----------GEVGEHQRDAVGDGGGFYGGGG 152

[Close]

BLAST of CSPI03G04270 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-32
Identity = 72/137 (52.55%), Postives = 95/137 (69.34%), Query Frame = 0


Query: 86  REQDQYMPMANVIRIMKRILPSHAKISDDTKETIQECVSEYISFITSEANERCHREQRKT 145
           REQD+++P+ANV RIMK+ LP++AKIS D KET+QECVSE+ISFIT EA+++C RE+RKT
Sbjct: 20  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 79

Query: 146 VTAEDVLWAMGKLGFDNYIEPLTVFLNRYRESESIRTEPMLRR--NVGYGAQVGMISPYG 205
           +  +D+LWAM  LGF++Y+EPL V+L +YRE E  +T    R+    G G   G  S  G
Sbjct: 80  INGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGGGGGGGAGSGSG 139

Query: 206 QAFQIGQVPAGMFDAMG 221
            A   G    GM   MG
Sbjct: 140 GAPMYG---GGMVTTMG 153

The following BLAST results are available for this feature:

BLAST of CSPI03G04270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SFD8	4.1e-45	57.78	Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q84W66	1.9e-42	77.06	Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.2e-31	49.69	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	3.4e-31	52.55	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q60EQ4	9.8e-31	61.70	Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica OX=39...	[more]

BLAST of CSPI03G04270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U1	4.2e-125	97.49	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0494...	[more]
A0A0A0L4W1	1.5e-98	81.17	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0559...	[more]
A0A5D3CPF3	1.3e-97	89.95	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BKV5	2.8e-97	89.47	nuclear transcription factor Y subunit B-9 OS=Cucumis melo OX=3656 GN=LOC1034911...	[more]
A0A5A7VC19	1.8e-96	89.47	Nuclear transcription factor Y subunit B-9 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of CSPI03G04270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031738747.1	1.2e-126	98.74	nuclear transcription factor Y subunit B-9-like [Cucumis sativus]	[more]
KAE8650108.1	2.3e-109	98.58	hypothetical protein Csa_010418 [Cucumis sativus]	[more]
KAE8650109.1	7.1e-103	91.67	hypothetical protein Csa_010950 [Cucumis sativus]	[more]
XP_031738739.1	5.1e-101	93.78	nuclear transcription factor Y subunit B-9-like [Cucumis sativus] >KAE8650107.1 ...	[more]
KAE8650106.1	9.6e-100	90.19	hypothetical protein Csa_009480 [Cucumis sativus]	[more]

BLAST of CSPI03G04270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21970.1	2.9e-46	57.78	Histone superfamily protein	[more]
AT5G47670.1	1.4e-43	77.06	nuclear factor Y, subunit B6	[more]
AT5G47670.2	1.4e-43	77.06	nuclear factor Y, subunit B6	[more]
AT5G47640.1	8.3e-33	49.69	nuclear factor Y, subunit B2	[more]
AT4G14540.1	2.4e-32	52.55	nuclear factor Y, subunit B3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 157..175 score: 32.06 coord: 119..137 score: 47.73 coord: 138..156 score: 32.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..67
None	No IPR available	PANTHER	PTHR11064:SF115	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9	coord: 58..204
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 92..155 e-value: 2.6E-24 score: 85.3
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 77..190 e-value: 1.4E-40 score: 140.3
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 88..183
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 58..204
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 122..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04270.1	CSPI03G04270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding