CSPI03G04060 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04060
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 3341672 .. 3342549 (-)
RNA-Seq Expression	CSPI03G04060
Synteny	CSPI03G04060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAGAAGAAAAAGAGAATTACCCATTTCTCCCTTTCCTAAACAAAACATAACATTTTAGCCTCAACCCTCAGTCAGGGAATCTCTGAACGGGAAAAGAAAAAAGAACAAAAAAAGGTGAAATTGAGTTCGGGTTTTGTTGATCATCGTCTTGATTCTTGATTTGATTTCAATTTGATCCATCCATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAAATCAATCAAATCCATCATACACGGTTCTTTTTCTCTTCTTTCTCTACTACTTACTACTTACTACTTCTCAATCTAAATCCTCGTAAATCAATTATTATTAATTACTCTAATTTTTCTTTTACTTAATAACCGCTTTTTCTCTAATCCATTCCCCTCCAAATCTCCGATCTGATGTCATGAATATGAACATATATATGTCTCTGTTTTGTACTTTTTGTAATTTAATTTCTTGAGATCCATTACTGGTAGTGTGTGTTTAGATGAATCGCTATGTGGTTTTTTTGTTTTTTTGTTTTGTTTCTGCTGGTTATGAATTTCGATTGATGATTCGATGAATTTCGTTAAGAAGATGAAGTGAAAGGTTGTGCTGAATCGACTTGGAGAGTGAAAGGGGAAATTTGATGTGTTTGTTCTTTT

mRNA sequence

GAAAAGAAGAAAAAGAGAATTACCCATTTCTCCCTTTCCTAAACAAAACATAACATTTTAGCCTCAACCCTCAGTCAGGGAATCTCTGAACGGGAAAAGAAAAAAGAACAAAAAAAGGTGAAATTGAGTTCGGGTTTTGTTGATCATCGTCTTGATTCTTGATTTGATTTCAATTTGATCCATCCATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAAATCAATCAAATCCATCATACACGGTTCTTTTTCTCTTCTTTCTCTACTACTTACTACTTACTACTTCTCAATCTAAATCCTCGTAAATCAATTATTATTAATTACTCTAATTTTTCTTTTACTTAATAACCGCTTTTTCTCTAATCCATTCCCCTCCAAATCTCCGATCTGATGTCATGAATATGAACATATATATGTCTCTGTTTTGTACTTTTTGTAATTTAATTTCTTGAGATCCATTACTGGTAGTGTGTGTTTAGATGAATCGCTATGTGGTTTTTTTGTTTTTTTGTTTTGTTTCTGCTGGTTATGAATTTCGATTGATGATTCGATGAATTTCGTTAAGAAGATGAAGTGAAAGGTTGTGCTGAATCGACTTGGAGAGTGAAAGGGGAAATTTGATGTGTTTGTTCTTTT

Coding sequence (CDS)

ATGGAGATCCCAAGCAAAGTAATGAAGTTCAGATTCCACATTCTGGTAACCCTAATCTTATCCCTAACTCTCTTCTCCCTCTTCCTCCTTGCTCCAAGTTTCCTCTCCCTTCTCGCTTACTTCTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCCTTGCCGTTCTCCTCTTCGCCAACACCTCCCTTCCGTCACCTGATAAAGCAGCCGAAGGTCTTCTCAGCTATGTCGCCGGCCACCACGACCTCGACTCCTCCTCTCTCAAATCCGATTAA

Protein sequence

MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFANTSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD*

Homology

[Close]

BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match: A0A0A0L7E9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
          TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match: A0A218XLN4 (uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          M IP+ ++K+R HILV +ILSL+L  L LLAP F++LLAYFWPLFLSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
          TS P+PDKA EGLL YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match: A0A2N9IPE7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.2e-17
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP+ ++K++FH L  LILSL+L +LF +AP FL++LAYFWPLFLSTALFL AVL+F  
Sbjct: 1  MEIPANLLKYKFHFLFALILSLSLTTLFFIAPRFLTILAYFWPLFLSTALFLFAVLVFGK 60

Query: 61 TSLPSP----DKAAEGLLSYVAGH 81
          TS+P+     DKAA+GLL YVAGH
Sbjct: 61 TSVPATEPPGDKAAKGLLDYVAGH 84

[Close]

BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match: A0A371EZD3 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 58/89 (65.17%), Postives = 65/89 (73.03%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV+KFRFH L  L+  LTLFSL L+AP F++LLAYFWPLFLSTA+ L  V  FA 
Sbjct: 1  MEIPEKVLKFRFHFLGALLFCLTLFSLILMAPRFITLLAYFWPLFLSTAVVLALVFFFAK 60

Query: 61 TS-LPSPD-----KAAEGLLSYVAGHHDL 84
          TS LPS D      A +GLL YVAGHHDL
Sbjct: 61 TSPLPSADATSFHNAGQGLLDYVAGHHDL 89

[Close]

BLAST of CSPI03G04060 vs. ExPASy TrEMBL
Match: A0A7N2M8L6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.2e-17
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP+K+++++F  L  LILS+TL +LF LAP FL++LAYFWPLFLSTALFL AVL+F  
Sbjct: 1  MEIPAKLLQYKFQFLFALILSVTLIALFFLAPRFLTILAYFWPLFLSTALFLFAVLVFGK 60

Query: 61 TSLPSPD----KAAEGLLSYVAGH 81
          TS PS D    KA EGLL YVAGH
Sbjct: 61 TSPPSTDAPGGKAGEGLLDYVAGH 84

[Close]

BLAST of CSPI03G04060 vs. NCBI nr
Match: KGN56016.1 (hypothetical protein Csa_010324 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 5.8e-37
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
          TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD
Sbjct: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 91

[Close]

BLAST of CSPI03G04060 vs. NCBI nr
Match: KAG7028299.1 (hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 3.3e-24
Identity = 71/91 (78.02%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV KFRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWKFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 90

[Close]

BLAST of CSPI03G04060 vs. NCBI nr
Match: KAG6577526.1 (hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015588.1 hypothetical protein SDJN02_23224, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.9 bits (302), Expect = 5.6e-24
Identity = 70/87 (80.46%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIP KV KFRFHI+  LILSL LFSL LLAP FLSLLA+FWPL LSTALFLLAVLLF N
Sbjct: 1  MEIPRKVAKFRFHIVAALILSLILFSLLLLAPKFLSLLAFFWPLLLSTALFLLAVLLFTN 60

Query: 61 TSLPSPDKAAEGLLSYVAGH--HDLDS 86
          TSLP PDKAAEGLL+YVAGH  H LD+
Sbjct: 61 TSLPLPDKAAEGLLNYVAGHPDHHLDA 87

[Close]

BLAST of CSPI03G04060 vs. NCBI nr
Match: KAG6596766.1 (hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.6 bits (301), Expect = 7.3e-24
Identity = 70/91 (76.92%), Postives = 75/91 (82.42%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          MEIPSKV +FRFH L  L L LTLFSL LLAP  LSL+AYFWPL LSTALFLLAVLLFAN
Sbjct: 1  MEIPSKVWRFRFHFLAALTLCLTLFSLVLLAPRLLSLVAYFWPLLLSTALFLLAVLLFAN 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHDLDSSSLKSD 92
           SLP PDK  EGLL+YVAGH DLD +SLK+D
Sbjct: 61 ASLPPPDKTGEGLLNYVAGHLDLD-ASLKTD 90

[Close]

BLAST of CSPI03G04060 vs. NCBI nr
Match: XP_031404551.1 (uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical protein CDL15_Pgr012054 [Punica granatum] >PKI77517.1 hypothetical protein CRG98_002123 [Punica granatum])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          M IP+ ++K+R HILV +ILSL+L  L LLAP F++LLAYFWPLFLSTALFL+AV+ F  
Sbjct: 1  MAIPAAILKYRLHILVAVILSLSLLGLVLLAPRFVTLLAYFWPLFLSTALFLVAVVFFGK 60

Query: 61 TSLPSPDKAAEGLLSYVAGHHD 83
          TS P+PDKA EGLL YVAG  D
Sbjct: 61 TSPPTPDKAGEGLLDYVAGDPD 82

[Close]

BLAST of CSPI03G04060 vs. TAIR 10
Match: AT4G16400.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1   MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
           MEI +K+M++RFH +VT+++S+ + SL   AP  L++LAYFWPLF STA FL   + F  
Sbjct: 122 MEIQAKLMEYRFHFMVTIMVSVIVASLVYAAPRILNILAYFWPLFASTAAFLAMAITFGG 181

Query: 61  TSLPSPDKAAEGLLSYVAGH-HDLDSSSLKSD 92
               S +   E L+ YVAG   D   ++L+ D
Sbjct: 182 FQQLSEEATGERLMDYVAGRPEDSHKNNLRDD 213

[Close]

BLAST of CSPI03G04060 vs. TAIR 10
Match: AT3G13175.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 7.6e-11
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 0


Query: 1  MEIPSKVMKFRFHILVTLILSLTLFSLFLLAPSFLSLLAYFWPLFLSTALFLLAVLLFAN 60
          ME   K++KF+  I+   +LSL   +L   +P FL++L+YFWPLFLSTALFL AV  FA 
Sbjct: 1  MEFREKLLKFKLQIVFAFVLSLLTVALVAYSPGFLTVLSYFWPLFLSTALFLAAVFFFAR 60

Query: 61 TS-LPSPDK-----------AAEGLLSYVAG--HHDL 84
          TS LP               AAEG+L YV G  H D+
Sbjct: 61 TSDLPVSSTIIPGEGAGLKVAAEGILDYVVGGQHEDI 97

The following BLAST results are available for this feature:

BLAST of CSPI03G04060 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7E9	2.8e-37	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047770 PE=4 SV=1	[more]
A0A218XLN4	5.0e-18	67.07	uncharacterized protein LOC116213666 OS=Punica granatum OX=22663 GN=LOC116213666...	[more]
A0A2N9IPE7	3.2e-17	64.29	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS55289 PE=4 SV=1	[more]
A0A371EZD3	4.2e-17	65.17	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_49244 P...	[more]
A0A7N2M8L6	7.2e-17	65.48	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CSPI03G04060 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56016.1	5.8e-37	100.00	hypothetical protein Csa_010324 [Cucumis sativus]	[more]
KAG7028299.1	3.3e-24	78.02	hypothetical protein SDJN02_09480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577526.1	5.6e-24	80.46	hypothetical protein SDJN03_25100, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596766.1	7.3e-24	76.92	hypothetical protein SDJN03_09946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_031404551.1	1.0e-17	67.07	uncharacterized protein LOC116213666 [Punica granatum] >OWM85804.1 hypothetical ...	[more]

BLAST of CSPI03G04060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16400.1	1.5e-11	43.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G13175.1	7.6e-11	46.39	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34125	OS01G0762900 PROTEIN	coord: 1..90
None	No IPR available	PANTHER	PTHR34125:SF4	PROTEIN, PUTATIVE-RELATED	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04060.1	CSPI03G04060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane