CSPI03G03940 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G03940
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transmembrane protein, putative
Location	Chr3: 3222547 .. 3223020 (-)
RNA-Seq Expression	CSPI03G03940
Synteny	CSPI03G03940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTACAAAAACCTCACTTTCCCAACCAAATCCCAAACGCCTTTGAAAAAACTACTATTGCCTTCTTTTCAAGCCAATTCACATTCCCAATCTTCCTTAATTCTTTCTTTCTTTCTCCTCTTAATCCCACAAATTCACACCAACCCAATCCAAGATCTGGACCTCGGAGCCACTATCACAATTCACAATGTGCTGCGTTGGAAAGGTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAGGGTTTCGTTTCTGTGAATCTTTGTTTTTTTTTTTTTTAATTTTAGAGATGTTTTGGGATTGGTTTGTTTGTTTGTTATTTGGCTG

mRNA sequence

AAATTACAAAAACCTCACTTTCCCAACCAAATCCCAAACGCCTTTGAAAAAACTACTATTGCCTTCTTTTCAAGCCAATTCACATTCCCAATCTTCCTTAATTCTTTCTTTCTTTCTCCTCTTAATCCCACAAATTCACACCAACCCAATCCAAGATCTGGACCTCGGAGCCACTATCACAATTCACAATGTGCTGCGTTGGAAAGGTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAGGGTTTCGTTTCTGTGAATCTTTGTTTTTTTTTTTTTTAATTTTAGAGATGTTTTGGGATTGGTTTGTTTGTTTGTTATTTGGCTG

Coding sequence (CDS)

ATGTGCTGCGTTGGAAAGGTTTGCATGCTCTGCACCTGCCTCATTCTCGTCGTTGTCGCCATCGGTTTGCTCTTTGGATTCGGAGTTTTCAAAGATGGATTTCATAAGATTAAAGATAAAGTCGATTTCTGCGATGGAGGTCCCTGCGGCGGCGGTGGACACGGCTCTTTCTCCCCTGCACCTCCGCCTCCTCCGTTCTAG

Protein sequence

MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPAPPPPPF*

Homology

[Close]

BLAST of CSPI03G03940 vs. ExPASy TrEMBL
Match: A0A0A0L2S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.4e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60
          MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

Query: 61 PPPPPF 67
          PPPPPF
Sbjct: 61 PPPPPF 66

[Close]

BLAST of CSPI03G03940 vs. ExPASy TrEMBL
Match: A0A1S3BL26 (uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60
          MCC GK+CMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F PA
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFPA 60

Query: 61 PPP 64
          PPP
Sbjct: 61 PPP 61

[Close]

BLAST of CSPI03G03940 vs. ExPASy TrEMBL
Match: A0A6J1EWB7 (uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC111438773 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-20
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGS--FS 60
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG GG G   F 
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60

Query: 61 PAPPP 64
           APPP
Sbjct: 61 AAPPP 65

[Close]

BLAST of CSPI03G03940 vs. ExPASy TrEMBL
Match: I1M6D3 (Uncharacterized protein OS=Glycine max OX=3847 GN=102665099 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.5e-16
Identity = 45/63 (71.43%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60
          MCC G++CMLCTCL+LVV+AIGL+FGFGVFK GFHKIKD V FCD   CGGGG      A
Sbjct: 1  MCCGGRICMLCTCLVLVVIAIGLVFGFGVFKHGFHKIKDTVSFCDS--CGGGGRPFIGYA 60

Query: 61 PPP 64
          PPP
Sbjct: 61 PPP 61

[Close]

BLAST of CSPI03G03940 vs. ExPASy TrEMBL
Match: I1JJM5 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-15
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCD--GGPCGGGGHGSFS 60
          MCC G+VCMLCTCL+LVV+AIGLLFGFGVFK GFHKIKD V FCD  GG   GGG     
Sbjct: 1  MCCGGRVCMLCTCLVLVVIAIGLLFGFGVFKHGFHKIKDTVSFCDSCGGGAAGGGRPFIG 60

Query: 61 PAPPP 64
           APPP
Sbjct: 61 YAPPP 65

[Close]

BLAST of CSPI03G03940 vs. NCBI nr
Match: XP_011650464.1 (uncharacterized protein LOC105434787 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.0e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60
          MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA
Sbjct: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60

Query: 61 PPPPPF 67
          PPPPPF
Sbjct: 61 PPPPPF 66

[Close]

BLAST of CSPI03G03940 vs. NCBI nr
Match: XP_038905566.1 (uncharacterized protein Os04g0629400 [Benincasa hispida])

HSP 1 Score: 109.8 bits (273), Expect = 9.4e-21
Identity = 56/68 (82.35%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGS---- 60
          MCC GKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVD+CDGG CGGGG G     
Sbjct: 1  MCCFGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDYCDGGLCGGGGGGGGGGR 60

Query: 61 -FSPAPPP 64
           F  APPP
Sbjct: 61 PFFAAPPP 68

[Close]

BLAST of CSPI03G03940 vs. NCBI nr
Match: XP_008449006.1 (PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 55/63 (87.30%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGSFSPA 60
          MCC GK+CMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGG CGGG    F PA
Sbjct: 1  MCCFGKLCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGLCGGG--RPFFPA 60

Query: 61 PPP 64
          PPP
Sbjct: 61 PPP 61

[Close]

BLAST of CSPI03G03940 vs. NCBI nr
Match: XP_022932418.1 (uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932420.1 uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932421.1 uncharacterized protein LOC111438773 [Cucurbita moschata])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGS--FS 60
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG GG G   F 
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGRPFF 60

Query: 61 PAPPP 64
           APPP
Sbjct: 61 AAPPP 65

[Close]

BLAST of CSPI03G03940 vs. NCBI nr
Match: KAG7015596.1 (hypothetical protein SDJN02_23232, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-19
Identity = 53/67 (79.10%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDFCDGGPCGGGGHGS---- 60
          MCC GKVCMLCTCLILVVVA+G LFGFGVFKDGFHKIKDK DFCDGG CG GG G     
Sbjct: 1  MCCFGKVCMLCTCLILVVVAVGFLFGFGVFKDGFHKIKDKADFCDGGICGSGGGGGGGRP 60

Query: 61 FSPAPPP 64
          F  APPP
Sbjct: 61 FFAAPPP 67

[Close]

BLAST of CSPI03G03940 vs. TAIR 10
Match: AT3G13275.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 29 Blast hits to 29 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 1.6e-13
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 1  MCCVGKVCMLCTCLILVVVAIGLLFGFGVFKDGFHKIKDKVDF-CD-----GGPCGGGGH 60
          MCC G++CMLCTCL+LVV+AIG LFGFGVFKDGFHKI + +   CD     GG  G  G+
Sbjct: 1  MCC-GRICMLCTCLLLVVIAIGFLFGFGVFKDGFHKIHESIHLECDPRFGCGGGLGRRGY 60

The following BLAST results are available for this feature:

BLAST of CSPI03G03940 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G03940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2S1	2.4e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G045170 PE=4 SV=1	[more]
A0A1S3BL26	6.0e-21	87.30	uncharacterized protein LOC103491008 OS=Cucumis melo OX=3656 GN=LOC103491008 PE=...	[more]
A0A6J1EWB7	5.0e-20	81.54	uncharacterized protein LOC111438773 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
I1M6D3	7.5e-16	71.43	Uncharacterized protein OS=Glycine max OX=3847 GN=102665099 PE=4 SV=1	[more]
I1JJM5	1.7e-15	72.31	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_02G303200 PE=4 SV=1	[more]

BLAST of CSPI03G03940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650464.1	5.0e-30	100.00	uncharacterized protein LOC105434787 [Cucumis sativus]	[more]
XP_038905566.1	9.4e-21	82.35	uncharacterized protein Os04g0629400 [Benincasa hispida]	[more]
XP_008449006.1	1.2e-20	87.30	PREDICTED: uncharacterized protein LOC103491008 [Cucumis melo]	[more]
XP_022932418.1	1.0e-19	81.54	uncharacterized protein LOC111438773 [Cucurbita moschata] >XP_022932419.1 unchar...	[more]
KAG7015596.1	1.8e-19	79.10	hypothetical protein SDJN02_23232, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI03G03940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13275.1	1.6e-13	60.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36753	TRANSMEMBRANE PROTEIN	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G03940.1	CSPI03G03940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane