CSPI03G03240 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G03240
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionacidic leucine-rich nuclear phosphoprotein 32 family member B-like
LocationChr3: 2622532 .. 2622957 (-)
RNA-Seq ExpressionCSPI03G03240
SyntenyCSPI03G03240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACTGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAA

mRNA sequence

ATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACTGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAA

Coding sequence (CDS)

ATGAGAAACCATGAGGAGCCACAACCTCATGAACAATTTGATATAATGGAACTTATTCTTCAATTATCTCCCTATCATAATAAGCCCCATCATCAAGATACTGAATTTCATGACGATCACAAAGATAAAAGAGTAGAAGACGATGATGGAGATGTAAACACTGACGATCAATATGACAACCGAAATGAGAAAGAAGACAAGGTCAGTGATGAAGATGAAATGAAGGAATGGGATGAGAAAGAAGGTGAAGATGATGAATATGATGAGGCCGAGGGGTGGGACGAGGAAGAAGAAGATGAAGAGTTGGAGATGAGGATTGAAGAGTTCATAGCAAAGGTGAACAAGAGATGGAGAGAAGAGAAGTTAAGGGACCATTTGCTTATTCAAATTTGTTCTACTAATAATGTTACTAATATCTCAAATTAA

Protein sequence

MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDNRNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREEKLRDHLLIQICSTNNVTNISN*
Homology
BLAST of CSPI03G03240 vs. ExPASy TrEMBL
Match: A0A0A0L728 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 3.6e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60
           MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN
Sbjct: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60

Query: 61  RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE 120
           RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE
Sbjct: 61  RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE 120

Query: 121 KLRDHLLIQICSTNNVTNISN 142
           KLRDHLLIQICSTNNVTNISN
Sbjct: 121 KLRDHLLIQICSTNNVTNISN 141

BLAST of CSPI03G03240 vs. ExPASy TrEMBL
Match: A0A5D3D7D0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001210 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.8e-43
Identity = 115/146 (78.77%), Postives = 123/146 (84.25%), Query Frame = 0

Query: 1   MRNHEEPQ-PHEQFDIM--ELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQ 60
           MRNHEEPQ PHEQF+IM  +LIL+LSPYHNKPHHQDT   DD       DD  + NTDDQ
Sbjct: 1   MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPHHQDTREEDD-------DDGDNQNTDDQ 60

Query: 61  YDNRNEKEDK-VSD-EDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNK 120
           YDNRNEKEDK +SD EDEMKEWDEKEGE+DEY EAE WDEEEEDEELE RIEEFIAKVNK
Sbjct: 61  YDNRNEKEDKLISDIEDEMKEWDEKEGEEDEY-EAERWDEEEEDEELEKRIEEFIAKVNK 120

Query: 121 RWREEKLRDHLLIQICSTNNVTNISN 142
           RWREEKLRDHLLIQICSTN ++N SN
Sbjct: 121 RWREEKLRDHLLIQICSTNVISNTSN 138

BLAST of CSPI03G03240 vs. ExPASy TrEMBL
Match: A0A6J1KZL9 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita maxima OX=3661 GN=LOC111498513 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.0e-06
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 0

Query: 9   PHEQFDIME--LILQLSPYHNKPHHQDTEFHDDHKDKRVE-----------------DDD 68
           PH  F I    ++L +  YH  P HQ + +H       +E                 DD+
Sbjct: 42  PHFMFSIFNSIILLIIVTYHRPPLHQ-SPYHIRKGSCYLESYQGYYTPCQNIEFYACDDE 101

Query: 69  GDVNTDDQYDNRNEKED-KVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEE 128
            D + + + D++NEK++ +  +EDE ++ DE++ + D+ D+ E  DE++ D+ELE RIEE
Sbjct: 102 HDSDDEYEDDSQNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEKDNDDELEKRIEE 161

Query: 129 FIAKVNKRWREEKLRDHLLIQICSTN 135
           FIAKVNKRWREEKLRD+L  Q CS+N
Sbjct: 162 FIAKVNKRWREEKLRDNLFNQFCSSN 186

BLAST of CSPI03G03240 vs. NCBI nr
Match: KAE8650077.1 (hypothetical protein Csa_010314 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 7.5e-68
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0

Query: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 60
           MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN
Sbjct: 50  MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQYDN 109

Query: 61  RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE 120
           RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE
Sbjct: 110 RNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWREE 169

Query: 121 KLRDHLLIQICSTNNVTNISN 142
           KLRDHLLIQICSTNNVTNISN
Sbjct: 170 KLRDHLLIQICSTNNVTNISN 190

BLAST of CSPI03G03240 vs. NCBI nr
Match: TYK19467.1 (hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-43
Identity = 115/146 (78.77%), Postives = 123/146 (84.25%), Query Frame = 0

Query: 1   MRNHEEPQ-PHEQFDIM--ELILQLSPYHNKPHHQDTEFHDDHKDKRVEDDDGDVNTDDQ 60
           MRNHEEPQ PHEQF+IM  +LIL+LSPYHNKPHHQDT   DD       DD  + NTDDQ
Sbjct: 1   MRNHEEPQRPHEQFEIMDDQLILRLSPYHNKPHHQDTREEDD-------DDGDNQNTDDQ 60

Query: 61  YDNRNEKEDK-VSD-EDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNK 120
           YDNRNEKEDK +SD EDEMKEWDEKEGE+DEY EAE WDEEEEDEELE RIEEFIAKVNK
Sbjct: 61  YDNRNEKEDKLISDIEDEMKEWDEKEGEEDEY-EAERWDEEEEDEELEKRIEEFIAKVNK 120

Query: 121 RWREEKLRDHLLIQICSTNNVTNISN 142
           RWREEKLRDHLLIQICSTN ++N SN
Sbjct: 121 RWREEKLRDHLLIQICSTNVISNTSN 138

BLAST of CSPI03G03240 vs. NCBI nr
Match: XP_038876855.1 (glutamic acid-rich protein-like [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 97/143 (67.83%), Postives = 111/143 (77.62%), Query Frame = 0

Query: 1   MRNHEEPQPHEQFDIMELILQLSPYHNKPHHQDTEFH--DDHKDKRVEDDDGDVNTDDQY 60
           MRNH EP P EQF+IMEL LQLSPYH KP HQD EF   D  +D R ED+D D N   +Y
Sbjct: 67  MRNH-EPHPREQFEIMELTLQLSPYH-KP-HQDIEFSACDQREDTREEDEDEDKNV--EY 126

Query: 61  DNRNEKEDKVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEEFIAKVNKRWR 120
            N+NEKED+ +DEDE+K+ +EKE ED++ D  E  D EEEDEELE RIEEFIAKVNKRWR
Sbjct: 127 GNKNEKEDEFNDEDEIKQLNEKEHEDEDNDRDEVGD-EEEDEELEKRIEEFIAKVNKRWR 186

Query: 121 EEKLRDHLLIQICSTNNVTNISN 142
           EEKLRDHLLIQICS NNV++ SN
Sbjct: 187 EEKLRDHLLIQICS-NNVSSTSN 202

BLAST of CSPI03G03240 vs. NCBI nr
Match: XP_023005569.1 (acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita maxima])

HSP 1 Score: 63.2 bits (152), Expect = 2.1e-06
Identity = 58/146 (39.73%), Postives = 86/146 (58.90%), Query Frame = 0

Query: 9   PHEQFDIME--LILQLSPYHNKPHHQDTEFHDDHKDKRVE-----------------DDD 68
           PH  F I    ++L +  YH  P HQ + +H       +E                 DD+
Sbjct: 42  PHFMFSIFNSIILLIIVTYHRPPLHQ-SPYHIRKGSCYLESYQGYYTPCQNIEFYACDDE 101

Query: 69  GDVNTDDQYDNRNEKED-KVSDEDEMKEWDEKEGEDDEYDEAEGWDEEEEDEELEMRIEE 128
            D + + + D++NEK++ +  +EDE ++ DE++ + D+ D+ E  DE++ D+ELE RIEE
Sbjct: 102 HDSDDEYEDDSQNEKDEIEQLNEDETEQCDEEDEDVDDEDDTERCDEKDNDDELEKRIEE 161

Query: 129 FIAKVNKRWREEKLRDHLLIQICSTN 135
           FIAKVNKRWREEKLRD+L  Q CS+N
Sbjct: 162 FIAKVNKRWREEKLRDNLFNQFCSSN 186

BLAST of CSPI03G03240 vs. NCBI nr
Match: KAG6577589.1 (hypothetical protein SDJN03_25163, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 55/126 (43.65%), Postives = 72/126 (57.14%), Query Frame = 0

Query: 32  QDTEFHDDHKDKRVEDDDGDVNTD-----------DQYDNRNEKEDKVSDEDEMKEWDEK 91
           QD EF    +D+   +DD D N D           D+ +  NE++++ +D D   E +++
Sbjct: 25  QDAEFSAREEDEDKREDDEDENADSSENEKIDRDRDEIEQLNEEDEEDADNDGFDEDEDR 84

Query: 92  EG-------EDDE------YDEAEGWD--EEEEDEELEMRIEEFIAKVNKRWREEKLRDH 132
           +G       E+DE       DE E WD  EEEE+EEL  RIEEFIAK NKRWREEKLRD+
Sbjct: 85  DGDEIEQSNEEDEDNDSVDKDETERWDDEEEEEEEELVRRIEEFIAKENKRWREEKLRDN 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7283.6e-68100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G036520 PE=4 SV=1[more]
A0A5D3D7D01.8e-4378.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1KZL91.0e-0639.73acidic leucine-rich nuclear phosphoprotein 32 family member B-like OS=Cucurbita ... [more]
Match NameE-valueIdentityDescription
KAE8650077.17.5e-68100.00hypothetical protein Csa_010314 [Cucumis sativus][more]
TYK19467.13.7e-4378.77hypothetical protein E5676_scaffold443G001210 [Cucumis melo var. makuwa][more]
XP_038876855.15.2e-2967.83glutamic acid-rich protein-like [Benincasa hispida][more]
XP_023005569.12.1e-0639.73acidic leucine-rich nuclear phosphoprotein 32 family member B-like [Cucurbita ma... [more]
KAG6577589.11.2e-0443.65hypothetical protein SDJN03_25163, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..101
NoneNo IPR availablePANTHERPTHR36595:SF2SUBFAMILY NOT NAMEDcoord: 1..132
NoneNo IPR availablePANTHERPTHR36595TRANSMEMBRANE PROTEINcoord: 1..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G03240.1CSPI03G03240.1mRNA