CSPI03G03010 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G03010
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	NAC domain-containing protein
Location	Chr3: 2478402 .. 2478835 (-)
RNA-Seq Expression	CSPI03G03010
Synteny	CSPI03G03010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGTGGTGTGTAGGGTTTTCAAGAAGAAAATGACAACAATCCAAAAGATGGGTGACTATGAATCACCTTATTGGCAAGATCATGATCAAATCTCCTTCATGCCAGACATCGATTCTCCAAATCAAATCTCTCACCTTTGCAAGCATGAGGTTGATGATCATCATCATCTTCACTTCGCCATGTTCGACAATGCTTCCCTTCAGCTCCCACGACGTCCCGAGCTGATCTCTGACGTCTCGTCAAGCAGCTATGATCTCCGAGCAAACGCTCCTTCCTCGTCTCAAACATTCTTTCATGCCTTCGATAGCCAGTTGATGGATTGGCGAGCCATGGACCGATTTGTCGCATCTCAGCTGAGTGCAGATCGAGATGATGATCATAGAAGAGAAGAAGAAGCAATTTACTCTGAAGACACCAAATATACAAGTGAATGA

mRNA sequence

GGGTGGTGTGTAGGGTTTTCAAGAAGAAAATGACAACAATCCAAAAGATGGGTGACTATGAATCACCTTATTGGCAAGATCATGATCAAATCTCCTTCATGCCAGACATCGATTCTCCAAATCAAATCTCTCACCTTTGCAAGCATGAGGTTGATGATCATCATCATCTTCACTTCGCCATGTTCGACAATGCTTCCCTTCAGCTCCCACGACGTCCCGAGCTGATCTCTGACGTCTCGTCAAGCAGCTATGATCTCCGAGCAAACGCTCCTTCCTCGTCTCAAACATTCTTTCATGCCTTCGATAGCCAGTTGATGGATTGGCGAGCCATGGACCGATTTGTCGCATCTCAGCTGAGTGCAGATCGAGATGATGATCATAGAAGAGAAGAAGAAGCAATTTACTCTGAAGACACCAAATATACAAGTGAATGA

Coding sequence (CDS)

ATGACAACAATCCAAAAGATGGGTGACTATGAATCACCTTATTGGCAAGATCATGATCAAATCTCCTTCATGCCAGACATCGATTCTCCAAATCAAATCTCTCACCTTTGCAAGCATGAGGTTGATGATCATCATCATCTTCACTTCGCCATGTTCGACAATGCTTCCCTTCAGCTCCCACGACGTCCCGAGCTGATCTCTGACGTCTCGTCAAGCAGCTATGATCTCCGAGCAAACGCTCCTTCCTCGTCTCAAACATTCTTTCATGCCTTCGATAGCCAGTTGATGGATTGGCGAGCCATGGACCGATTTGTCGCATCTCAGCTGAGTGCAGATCGAGATGATGATCATAGAAGAGAAGAAGAAGCAATTTACTCTGAAGACACCAAATATACAAGTGAATGA

Protein sequence

MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLPRRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRREEEAIYSEDTKYTSE*

Homology

[Close]

BLAST of CSPI03G03010 vs. ExPASy TrEMBL
Match: A0A0A0L6Z7 (NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G034810 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.3e-70
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP
Sbjct: 160 MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQ MDWRAMDRFVASQLSADRDDDHRRE
Sbjct: 220 RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQSMDWRAMDRFVASQLSADRDDDHRRE 279

Query: 121 EEAIYSEDTKYTSE 135
           EEAIYSEDTKYTSE
Sbjct: 280 EEAIYSEDTKYTSE 293

[Close]

BLAST of CSPI03G03010 vs. ExPASy TrEMBL
Match: A0A5D3D7R0 (NAC domain-containing protein 26-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G001450 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-62
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MT IQKMGDYESPYWQDHDQ+SFMPDIDSPNQISHLCKHEVDDHHHLHFAMFD+AS QLP
Sbjct: 1   MTAIQKMGDYESPYWQDHDQMSFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDDASPQLP 60

Query: 61  RRPELISDVSSSSYD-LRANA-PSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHR 120
           RRPELISD+SSSSYD LRAN+ PSSSQTFFHAFD+Q MDWRAMDRFVASQLSADRDD H 
Sbjct: 61  RRPELISDISSSSYDHLRANSTPSSSQTFFHAFDNQSMDWRAMDRFVASQLSADRDDHHG 120

Query: 121 REEEAIYSEDTKYTSE 135
           REEEAIYSEDTKYTSE
Sbjct: 121 REEEAIYSEDTKYTSE 136

[Close]

BLAST of CSPI03G03010 vs. ExPASy TrEMBL
Match: A0A1S3BKR6 (NAC domain-containing protein 26-like OS=Cucumis melo OX=3656 GN=LOC103490919 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.2e-62
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MT IQKMGDYESPYWQDHDQ+SFMPDIDSPNQISHLCKHEVDDHHHLHFAMFD+AS QLP
Sbjct: 160 MTAIQKMGDYESPYWQDHDQMSFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDDASPQLP 219

Query: 61  RRPELISDVSSSSYD-LRANA-PSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHR 120
           RRPELISD+SSSSYD LRAN+ PSSSQTFFHAFD+Q MDWRAMDRFVASQLSADRDD H 
Sbjct: 220 RRPELISDISSSSYDHLRANSTPSSSQTFFHAFDNQSMDWRAMDRFVASQLSADRDDHHG 279

Query: 121 REEEAIYSEDTKYTSE 135
           REEEAIYSEDTKYTSE
Sbjct: 280 REEEAIYSEDTKYTSE 295

[Close]

BLAST of CSPI03G03010 vs. ExPASy TrEMBL
Match: A0A6J1FVP0 (NAC domain-containing protein 26-like OS=Cucurbita moschata OX=3662 GN=LOC111448526 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 4.1e-45
Identity = 100/134 (74.63%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTT QKMGDYESPYWQD DQISFMP IDSPNQISH CKHE+D   HLHFA+FD+A  QLP
Sbjct: 160 MTTAQKMGDYESPYWQD-DQISFMPQIDSPNQISHPCKHEID---HLHFAVFDDAFPQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           R  EL SD+SS SYD R+NAPSSSQTFFH  D++LMDW+AMDR+VASQLS DRDD H R 
Sbjct: 220 RHLELNSDMSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTDRDDHHGR- 279

Query: 121 EEAIYSEDTKYTSE 135
           +EA YS  TKY SE
Sbjct: 280 DEANYSHPTKYASE 288

[Close]

BLAST of CSPI03G03010 vs. ExPASy TrEMBL
Match: A0A345BTE4 (NAC7 OS=Cucurbita pepo OX=3663 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.0e-43
Identity = 98/134 (73.13%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTT QKMGDYESPYWQD DQISFMP IDSPNQIS  CKHE+D   HLHF +FD+A  QLP
Sbjct: 160 MTTAQKMGDYESPYWQD-DQISFMPQIDSPNQISQPCKHEID---HLHFTVFDDAFPQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           R  EL SD+SS SYD R+NAPSSSQTFFH  D++LMDW+AMDR+VASQLS DRDD H R 
Sbjct: 220 RHLELNSDMSSCSYDPRSNAPSSSQTFFHGVDNKLMDWQAMDRYVASQLSTDRDDHHGR- 279

Query: 121 EEAIYSEDTKYTSE 135
           +EA YS  TKY SE
Sbjct: 280 DEANYSHPTKYASE 288

[Close]

BLAST of CSPI03G03010 vs. NCBI nr
Match: KAE8650072.1 (hypothetical protein Csa_010254 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP
Sbjct: 160 MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQ MDWRAMDRFVASQLSADRDDDHRRE
Sbjct: 220 RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQSMDWRAMDRFVASQLSADRDDDHRRE 279

Query: 121 EEAIYSEDTKYTSE 135
           EEAIYSEDTKYTSE
Sbjct: 280 EEAIYSEDTKYTSE 293

[Close]

BLAST of CSPI03G03010 vs. NCBI nr
Match: XP_004147975.1 (NAC domain-containing protein 26 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP
Sbjct: 160 MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQ MDWRAMDRFVASQLSADRDDDHRRE
Sbjct: 220 RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQSMDWRAMDRFVASQLSADRDDDHRRE 279

Query: 121 EEAIYSEDTKYTSE 135
           EEAIYSEDTKYTSE
Sbjct: 280 EEAIYSEDTKYTSE 293

[Close]

BLAST of CSPI03G03010 vs. NCBI nr
Match: XP_008448890.1 (PREDICTED: NAC domain-containing protein 26-like [Cucumis melo])

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MT IQKMGDYESPYWQDHDQ+SFMPDIDSPNQISHLCKHEVDDHHHLHFAMFD+AS QLP
Sbjct: 160 MTAIQKMGDYESPYWQDHDQMSFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDDASPQLP 219

Query: 61  RRPELISDVSSSSYD-LRANA-PSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHR 120
           RRPELISD+SSSSYD LRAN+ PSSSQTFFHAFD+Q MDWRAMDRFVASQLSADRDD H 
Sbjct: 220 RRPELISDISSSSYDHLRANSTPSSSQTFFHAFDNQSMDWRAMDRFVASQLSADRDDHHG 279

Query: 121 REEEAIYSEDTKYTSE 135
           REEEAIYSEDTKYTSE
Sbjct: 280 REEEAIYSEDTKYTSE 295

[Close]

BLAST of CSPI03G03010 vs. NCBI nr
Match: TYK19490.1 (NAC domain-containing protein 26-like [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-62
Identity = 124/136 (91.18%), Postives = 129/136 (94.85%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MT IQKMGDYESPYWQDHDQ+SFMPDIDSPNQISHLCKHEVDDHHHLHFAMFD+AS QLP
Sbjct: 1   MTAIQKMGDYESPYWQDHDQMSFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDDASPQLP 60

Query: 61  RRPELISDVSSSSYD-LRANA-PSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHR 120
           RRPELISD+SSSSYD LRAN+ PSSSQTFFHAFD+Q MDWRAMDRFVASQLSADRDD H 
Sbjct: 61  RRPELISDISSSSYDHLRANSTPSSSQTFFHAFDNQSMDWRAMDRFVASQLSADRDDHHG 120

Query: 121 REEEAIYSEDTKYTSE 135
           REEEAIYSEDTKYTSE
Sbjct: 121 REEEAIYSEDTKYTSE 136

[Close]

BLAST of CSPI03G03010 vs. NCBI nr
Match: XP_038876863.1 (NAC domain-containing protein 26-like [Benincasa hispida] >XP_038876864.1 NAC domain-containing protein 26-like [Benincasa hispida])

HSP 1 Score: 197.6 bits (501), Expect = 6.9e-47
Identity = 104/134 (77.61%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MTTIQKMGDYESPYWQDHDQISFMPDIDSPNQISHLCKHEVDDHHHLHFAMFDNASLQLP 60
           MTTIQKMGDYESPYWQ+ DQ SFMP IDSPNQISH CKHEVD   HL F MFD+A  QLP
Sbjct: 160 MTTIQKMGDYESPYWQE-DQFSFMPHIDSPNQISHPCKHEVD--RHLCFTMFDDAFPQLP 219

Query: 61  RRPELISDVSSSSYDLRANAPSSSQTFFHAFDSQLMDWRAMDRFVASQLSADRDDDHRRE 120
           RRPELISDVSS SYDLR NAPS SQT  H  D+Q MDWRAMDR+VASQLS D+DD H RE
Sbjct: 220 RRPELISDVSSCSYDLRENAPSLSQTLLHDLDNQSMDWRAMDRYVASQLSTDQDDRHGRE 279

Query: 121 EEAIYSEDTKYTSE 135
           EEA YSE TKY SE
Sbjct: 280 EEANYSEGTKYASE 290

The following BLAST results are available for this feature:

BLAST of CSPI03G03010 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G03010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Z7	6.3e-70	99.25	NAC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G034810 PE=4 SV...	[more]
A0A5D3D7R0	2.2e-62	91.18	NAC domain-containing protein 26-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BKR6	2.2e-62	91.18	NAC domain-containing protein 26-like OS=Cucumis melo OX=3656 GN=LOC103490919 PE...	[more]
A0A6J1FVP0	4.1e-45	74.63	NAC domain-containing protein 26-like OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]
A0A345BTE4	1.0e-43	73.13	NAC7 OS=Cucurbita pepo OX=3663 PE=2 SV=1	[more]

BLAST of CSPI03G03010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650072.1	1.3e-69	99.25	hypothetical protein Csa_010254 [Cucumis sativus]	[more]
XP_004147975.1	1.3e-69	99.25	NAC domain-containing protein 26 [Cucumis sativus]	[more]
XP_008448890.1	4.5e-62	91.18	PREDICTED: NAC domain-containing protein 26-like [Cucumis melo]	[more]
TYK19490.1	4.5e-62	91.18	NAC domain-containing protein 26-like [Cucumis melo var. makuwa]	[more]
XP_038876863.1	6.9e-47	77.61	NAC domain-containing protein 26-like [Benincasa hispida] >XP_038876864.1 NAC do...	[more]

BLAST of CSPI03G03010 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G03010.1	CSPI03G03010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding