CSPI03G02860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G02860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 2245253 .. 2245484 (+)
RNA-Seq Expression	CSPI03G02860
Synteny	CSPI03G02860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAACACCAGGGACTAGACATGGTGGCTAGACAACGCACGTATGGGGGAGCGGCTAGATCAACGAAACCTAGTAGTGTCATCGGTAGGATCCACTTGCTCATTCACTGACAAAATGCGGCGATGAACCTAATCGAAGCGTCCGAATGAATGACCAGATGAACGGCGACCTCGTGGTGCGACTTCAGTAAATTGGTGTGCGGTGTGGATAAGCGAAGCGCTCAGCTGA

mRNA sequence

ATGGCAAAACACCAGGGACTAGACATGGTGGCTAGACAACGCACGTATGGGGGAGCGGCTAGATCAACGAAACCTAGTAGTGTCATCGATGAACGGCGACCTCGTGGTGCGACTTCAGTAAATTGGTGTGCGGTGTGGATAAGCGAAGCGCTCAGCTGA

Coding sequence (CDS)

ATGGCAAAACACCAGGGACTAGACATGGTGGCTAGACAACGCACGTATGGGGGAGCGGCTAGATCAACGAAACCTAGTAGTGTCATCGATGAACGGCGACCTCGTGGTGCGACTTCAGTAAATTGGTGTGCGGTGTGGATAAGCGAAGCGCTCAGCTGA

Protein sequence

MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS*

Homology

[Close]

BLAST of CSPI03G02860 vs. ExPASy TrEMBL
Match: A0A0A0L2B2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G026680 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 6.2e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS 53
          MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS
Sbjct: 1  MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS 52

[Close]

BLAST of CSPI03G02860 vs. NCBI nr
Match: KGN55883.1 (hypothetical protein Csa_011081 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS 53
          MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS
Sbjct: 1  MAKHQGLDMVARQRTYGGAARSTKPSSVIDERRPRGATSVNWCAVWISEALS 52

The following BLAST results are available for this feature:

BLAST of CSPI03G02860 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G02860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2B2	6.2e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G026680 PE=4 SV=1	[more]

BLAST of CSPI03G02860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55883.1	1.3e-20	100.00	hypothetical protein Csa_011081 [Cucumis sativus]	[more]

BLAST of CSPI03G02860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G02860.1	CSPI03G02860.1	mRNA