CSPI03G01340 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G01340
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Prolamin_like domain-containing protein
Location	Chr3: 929868 .. 930278 (+)
RNA-Seq Expression	CSPI03G01340
Synteny	CSPI03G01340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

mRNA sequence

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Coding sequence (CDS)

ATGGGAAAGACAAGCAACTCAATTGGAGCACTATTAGTGGTGGTGATGCTCTCGCTACTTGTGGTAGACTCGTTGGCCTTAGTTCATCCTTCTATAATAGACGACAATGGCATATCATCGATATGGAGTGGTTGGATAGATAAAGATAGAGCACCTATTCTAGCATCGTGTTTGTACCTGATGAAGAGTGATAAATGCCAAGTGGAACTTTATAATTATTACTTTAATAAAAGCAATAAGGAAGTGGATCTAAGTTGTTGCGTGTATGTTAATTACATTGGCGAGGAATGTGCTGCATCATTTGAGTCTTGGTTCTCATCTCTTGGTTTCAAAGCCTTAAAGCCTAATCCAATGAAGCTTTACAACAATTGTTTTAAGAGACTGACTGTTCCAGCACCACCGACACTTTAA

Protein sequence

MGKTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAPPTL*

Homology

[Close]

BLAST of CSPI03G01340 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.4e-70
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNS GALL+VVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKS KEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNNCFKRLTVPAPPTL 137
           YNNCFKRLTVPAPPTL
Sbjct: 121 YNNCFKRLTVPAPPTL 136

[Close]

BLAST of CSPI03G01340 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.1e-50
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NS   LLVVVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CSPI03G01340 vs. ExPASy TrEMBL
Match: A0A5A7TZR1 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001070 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.2e-29
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSI--IDDNGISSIWSGWIDKDRAPILASCL 60
           M   +N++G +L ++   LL V+   LVHPS+  +DD+  S IW+GW+D+DRA  L  CL
Sbjct: 1   MANGTNTVGGILTIL---LLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCL 60

Query: 61  YLMKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPM 120
            +MKS KCQV+LYNYYFN S KE+DL CCV+V  +G+ CA +F  W+   G +  +PNPM
Sbjct: 61  DMMKSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPM 120

Query: 121 KLYNNCFKRLTVPAPPT 136
            +YNNC  RL    PPT
Sbjct: 121 IVYNNCVGRLQA-LPPT 133

[Close]

BLAST of CSPI03G01340 vs. ExPASy TrEMBL
Match: A0A5D3C280 (Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001130 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.9e-27
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 15  VMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYY 74
           +++ L  ++   LV  S +D++  S IW GW+D+DR   L  CL  M+S KCQVELYNYY
Sbjct: 4   IVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYY 63

Query: 75  FNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAP 134
           FN S KE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC  RL  P P
Sbjct: 64  FNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPP 122

[Close]

BLAST of CSPI03G01340 vs. ExPASy TrEMBL
Match: A0A0A0KEB8 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G054340 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.1e-27
Identity = 65/131 (49.62%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +N   A+  +V+L L  ++   LV  S +D++  SSIW+ W+D+DRA  L  CL  M+S 
Sbjct: 2   ANKTNAMRAMVIL-LSAINLAKLVQSSGVDEDYNSSIWNDWLDEDRAFTLRPCLDRMRSA 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNC 121

Query: 125 FKRLTVPAPPT 136
             RL+ P PPT
Sbjct: 122 ATRLSAP-PPT 130

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: KAE8650019.1 (hypothetical protein Csa_009940 [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 0


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60
           MGKTSNS GALL+VVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL
Sbjct: 1   MGKTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYL 60

Query: 61  MKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120
           MKSDKCQVELYNYYFNKS KEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL
Sbjct: 61  MKSDKCQVELYNYYFNKSKKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKL 120

Query: 121 YNN 124
           YNN
Sbjct: 121 YNN 123

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 2.3e-50
Identity = 99/132 (75.00%), Postives = 114/132 (86.36%), Query Frame = 0


Query: 5   SNSIGALLVVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSD 64
           +NS   LLVVVMLSLLVVDSLALV PS +DDNGISSIWS W+D+DRAP LA CL++M+S+
Sbjct: 2   NNSTRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDRAPTLAPCLHMMRSE 61

Query: 65  KCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNC 124
           KCQVELYNYYFN S KE+DLSCCVYVNY+G++CAA+FE WFS    +ALKPNPMK+YNNC
Sbjct: 62  KCQVELYNYYFNISKKELDLSCCVYVNYMGKKCAAAFEFWFSFPSLEALKPNPMKVYNNC 121

Query: 125 FKRLTVPAPPTL 137
           FKRLT PAP  L
Sbjct: 122 FKRLTFPAPTPL 133

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: KAA0046841.1 (hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK04493.1 hypothetical protein E5676_scaffold409G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 8.6e-29
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 0


Query: 1   MGKTSNSIGALLVVVMLSLLVVDSLALVHPSI--IDDNGISSIWSGWIDKDRAPILASCL 60
           M   +N++G +L ++   LL V+   LVHPS+  +DD+  S IW+GW+D+DRA  L  CL
Sbjct: 1   MANGTNTVGGILTIL---LLAVNLAILVHPSMADVDDDYNSPIWNGWVDEDRASNLRPCL 60

Query: 61  YLMKSDKCQVELYNYYFNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPM 120
            +MKS KCQV+LYNYYFN S KE+DL CCV+V  +G+ CA +F  W+   G +  +PNPM
Sbjct: 61  DMMKSAKCQVQLYNYYFNISKKELDLQCCVFVKIMGKYCAHAFAGWYEFPGLEVYEPNPM 120

Query: 121 KLYNNCFKRLTVPAPPT 136
            +YNNC  RL    PPT
Sbjct: 121 IVYNNCVGRLQA-LPPT 133

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: KAA0046835.1 (hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA0046840.1 hypothetical protein E6C27_scaffold216G001400 [Cucumis melo var. makuwa] >KAA0065932.1 hypothetical protein E6C27_scaffold10942G00010 [Cucumis melo var. makuwa] >TYK04499.1 hypothetical protein E5676_scaffold409G001130 [Cucumis melo var. makuwa] >TYK14838.1 hypothetical protein E5676_scaffold6575G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 8.1e-27
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 15  VMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYY 74
           +++ L  ++   LV  S +D++  S IW GW+D+DR   L  CL  M+S KCQVELYNYY
Sbjct: 4   IVILLFAINLSKLVQSSGVDEDYNSPIWDGWVDEDRGYTLRPCLDRMRSAKCQVELYNYY 63

Query: 75  FNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAP 134
           FN S KE+DL+CCV+V  +G++CA +F  W+   G +  +PNPMK+YNNC  RL  P P
Sbjct: 64  FNISKKELDLNCCVFVKVMGKKCAQAFTFWYQFPGLEIYEPNPMKVYNNCITRLDAPPP 122

[Close]

BLAST of CSPI03G01340 vs. NCBI nr
Match: KAG6575254.1 (hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 58/120 (48.33%), Postives = 79/120 (65.83%), Query Frame = 0


Query: 15  VMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDRAPILASCLYLMKSDKCQVELYNYY 74
           +++ LLVV+    V  +  DD+  S IW  W+D+DRA  L  CL LMKS KCQV+LYN Y
Sbjct: 1   MVVLLLVVNLQGFVRVTRADDDYNSPIWDRWLDEDRAYYLRPCLNLMKSAKCQVQLYNNY 60

Query: 75  FNKSNKEVDLSCCVYVNYIGEECAASFESWFSSLGFKALKPNPMKLYNNCFKRLTVPAPP 134
           FN S +E+DL+CCV++  +G++C  +F  WF+   F+  KPNPMKLY  C  RL+   PP
Sbjct: 61  FNLSKEELDLNCCVFIQVMGKKCTLNFAGWFNYPIFEVYKPNPMKLYKRCIARLSSSIPP 120

The following BLAST results are available for this feature:

BLAST of CSPI03G01340 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G01340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L535	6.4e-70	97.79	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]
A0A0A0KQ41	1.1e-50	75.00	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A5A7TZR1	4.2e-29	49.64	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3C280	3.9e-27	48.74	Prolamin_like domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KEB8	5.1e-27	49.62	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0543...	[more]

BLAST of CSPI03G01340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650019.1	2.9e-61	97.56	hypothetical protein Csa_009940 [Cucumis sativus]	[more]
KGN50979.1	2.3e-50	75.00	hypothetical protein Csa_008880 [Cucumis sativus]	[more]
KAA0046841.1	8.6e-29	49.64	hypothetical protein E6C27_scaffold216G001410 [Cucumis melo var. makuwa] >TYK044...	[more]
KAA0046835.1	8.1e-27	48.74	hypothetical protein E6C27_scaffold216G001330 [Cucumis melo var. makuwa] >KAA004...	[more]
KAG6575254.1	1.3e-24	48.33	hypothetical protein SDJN03_25893, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G01340 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 57..124 e-value: 2.5E-6 score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G01340.1	CSPI03G01340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity