CSPI03G00720 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G00720
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	cold shock domain-containing protein 3
Location	Chr3: 504754 .. 507601 (-)
RNA-Seq Expression	CSPI03G00720
Synteny	CSPI03G00720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGGTGGTTGTTTTAATTGTGGGGAGTATGGGCATATAGCCAGAGATTGCCAGAATGAAAGCCGTGGCAGCGGGGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCGGAAGATTTGGTGGCGGCGGCGGCGGTGGCGGTGGCTCAAACACTTGCTTCAATTGTGGGAAATCGGGGCATTTTGCTAGGGAGTGTCCTGATGCATCTTGATAAGGAGGGGGAAAGAGTAATAGTATATAATTTTTCCTTTAACCTCAATATTGTCCTTTAATTATGTTCTTCTTTTGGTGTGGATGGTGGCTATACGTAGCTTTACTTGAGAGGTTTCTATTAATTTTGATATTTTCCATGGTTGTTTAGCTCTTTAGGGGCAAATTTTTCTGGTTCACACATGATGTGGTAATTCGGTTAAATGAGGCATTTTTATCTTCTGTTCTTTGTTTTGTTACCTTTTCATATTTCGAGTTAATGTTGTGCGATGTCTGATTCAATTGTAATTATCCATGTTAACATTTAATAACACATGGAATGCAGTAGCTAAGTTCGATTTGATGATATACGTTGTTTCTTGTTGGCAATTTCTTTGTTTTAGCAATACCATACTAGGCCATCATTTCGTTTACTTCATCATCAAGAAGGGATTTCTCTTAGAGAATTCATTTATTCTGATCCTCAAGTGTTATGAGGTATGCTTAGGTGCACACTGCTCTGTCTTTCTTAGTTCTTTGTGTTTAGGAGTTGATGCTTGTGTTTGGTATTTCTATGTTTTCAATCCTCTATATTTTTTTTAATTTATTCTTCTAAGTTTCACAGATATAACTCTTACTACTACTAATTTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGGTAGTTTATGTAGGGTTTTGACAAGACGAAGCAGAAGGCACACTTGAAGTGACTTGTGAATAATTGAATTAAAAGAAGACTAATGGATAATGCTTTTGTGATGCAAATAATTGAATGCTTGTTACTGTCTAGTCACTGCCTTCTATATGTGAATGTGAATGTGAATGTGAAGTGTAGGTGAGGGATGGGTTCTCTTTATCCATCTCAACCCTTTTTCTTGAGGACTTGGGGTGGGTTATATGTGTGTTTGTGTGGGGACATTGGTGTGGAATAGTCATCCCAACATTTATTTTAAGTTAAAAGTCTTATGAAGTAACTTCTTATTATATGTTTGATTAGTAGCTAGACTAATGTAAGTGTAGTAAATTCCCATCAATGTGTATTTGACAAGATCACTAATAAGTAAATAGTAGTTTGATCTTGGGTCTTCAACTTTTCTCTACTCCTATCTATGAAATGGAAATTCTTAGAACATTAATTTTTCCCTCCTGGCCCTTGCCCTGTATGAGATATAATGTTTTCTTCATGGTATATAGTATCATTTTGGGCTGGTATGGGAATTAAATGATGTAGTTCTTCTCATACTCAAGAGTTATCTTTTGTGGGTTTTTGGATAAAGCTAATGAATAACTCAGAGGTTCAAGAAGGAGTTTGTGAAGTCTAGTATTCTCCTCAGTCCAAAATCATTTCTTTGAACACCTTTTAGAAAGGAATATAGTTTAAGTGGTCTTTTAGTGTTGAATTCTTTTGTTTGACTGATTTTGATATGTTCTGCATTATGCTTATTCATGTGTTGACTATTATACTTAAGTTCAACTTTATTCTCGTATAGTTTAAAGGAAAGAAAGAAATTATTCCCATCTAGCTCTGTTCAATATAGTTTATCACATCCTAAGAGGTTTACTTAAACACTTGTCCTAAACATATCAATTGTATTTACTTTGGTTATTCTTCCTTAAGCTTTGTTCCTACCCATCTGTGAGAGGCTAATGAAGAATTTCTCATTGCCATTGTTTACTCTCTTTTCCTCGTTGCTCTATGAGTTTTGTAAGTTCATAACCTCAAAGGCTGGCTGTTATTGATTGCTTAGAGAACTTCCAAGCTTTTAACTTGAAGTTAGTTTGCAATATAATTCCTCTAATTGTTCCTTGTGGTGCTGCCATTTATTGACCTTTGCTTTCAACAAGTCTATGAAACGCCTATTAGATGCATGTTGACTCTAAATTTTGTAGTTTATGA

mRNA sequence

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGATATAACTCTTACTACTACTAATTTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGTTTATGA

Coding sequence (CDS)

ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATCTATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATGGATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGATAGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGGTGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGCGGTGGTGGGGCTTGCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGATATAACTCTTACTACTACTAATTTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGTTTATGA

Protein sequence

MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGDITLTTTNFKLAQKIYQKNKGL*

Homology

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BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-41
Identity = 122/221 (55.20%), Postives = 142/221 (64.25%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGG----------GGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G          GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 NSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG- 184
               G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G 
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGG 211
             GGGGG G GG  CY CGG GH ARDC + G GG  GGGG
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGG 223

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BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38
Identity = 117/214 (54.67%), Postives = 135/214 (63.08%), Query Frame = 0


Query: 1   MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIA 60
           MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++ 
Sbjct: 1   MAEESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVE 60

Query: 61  PGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRG-GGGGGGYGFGGWRGGDR--RNG 120
            G DG++KA++V   DG++       GGGGGGRGG G GGG GGYG GG RGG R    G
Sbjct: 61  SGGDGRTKAVDVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYG-GGGRGGSRGYGGG 120

Query: 121 NSGAGGGGCYQCGEQ--GHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG 180
           + G GGGG Y  G +  G            GGG GGG GCF CGE GH ARDC +   GG
Sbjct: 121 DGGYGGGGGYGGGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGG 180

Query: 181 -----GGGGGGGGGGACYNCGGFGHLARDCNRGG 202
                GGGGGGGGGG CY CG  GH AR+C  GG
Sbjct: 181 GGGRFGGGGGGGGGGGCYKCGEDGHFARECTSGG 213

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BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.4e-35
Identity = 116/224 (51.79%), Postives = 131/224 (58.48%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGGY-----GFGGWRGGDRRNGN 124
           KA+ V A  G S  + +N  G G  RGG G G    G  G+     G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 125 SGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G 
Sbjct: 130 ---GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GGGGGG--GGGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG 213
           G   G   GG   CY CG  GH ARDC +  A G   SGGGG G
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSG 230

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BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.0e-33
Identity = 107/201 (53.23%), Postives = 125/201 (62.19%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 123
            KAI+V   DG+   GN      GG GG  GGRGGG G G G+GG  GG    G  G GG
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128

Query: 124 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 183
             CY+CGE GH+ARDC   S  GGG GGGGG    G  G        G  GGGG GGGGG
Sbjct: 129 SDCYKCGEPGHMARDC---SEGGGGYGGGGG----GYGGGGGYGGGGGGYGGGGRGGGGG 188

Query: 184 GGACYNCGGFGHLARDCNRGG 202
           GG+CY+CG  GH ARDC  GG
Sbjct: 189 GGSCYSCGESGHFARDCTSGG 202

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BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 7.4e-31
Identity = 105/208 (50.48%), Postives = 126/208 (60.58%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGYGFGGWRGGDRRNGNSGAGGG 123
            KAIEV   DG+        GG  GGRGG GGGG  GGG G G + GG    G+ G GGG
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGG 132

Query: 124 G----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGG 183
           G    C++CGE GH+AR+C    ++GGGG  GGGGG                G  G GGG
Sbjct: 133 GGDNSCFKCGEPGHMAREC----SQGGGGYSGGGGG----------------GRYGSGGG 192

Query: 184 GGGGGGG-ACYNCGGFGHLARDCNRGGA 203
           GGGGGGG +CY+CG  GH ARDC  GGA
Sbjct: 193 GGGGGGGLSCYSCGESGHFARDCTSGGA 200

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BLAST of CSPI03G00720 vs. ExPASy TrEMBL
Match: A0A0A0L4X7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.4e-109
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 212

[Close]

BLAST of CSPI03G00720 vs. ExPASy TrEMBL
Match: A0A5D3CJR2 (Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00680 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.4e-103
Identity = 209/216 (96.76%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GG GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 215

[Close]

BLAST of CSPI03G00720 vs. ExPASy TrEMBL
Match: E5RDD6 (Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.4e-103
Identity = 209/216 (96.76%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GG GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 215

[Close]

BLAST of CSPI03G00720 vs. ExPASy TrEMBL
Match: A0A1S3BKK1 (cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.4e-103
Identity = 209/216 (96.76%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GG GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 215

[Close]

BLAST of CSPI03G00720 vs. ExPASy TrEMBL
Match: A0A6J1E5N5 (cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111430958 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.8e-100
Identity = 205/212 (96.70%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG G
Sbjct: 121 GGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGGAG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 208

[Close]

BLAST of CSPI03G00720 vs. NCBI nr
Match: XP_004146143.1 (cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetical protein Csa_011109 [Cucumis sativus])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 212

[Close]

BLAST of CSPI03G00720 vs. NCBI nr
Match: XP_038876618.1 (cold shock domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 206/211 (97.63%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           G CYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG
Sbjct: 121 GACYQCGEQGHLARDCTRASNRSGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGG 212
            GACYNCGGFGHLARDCNRGGAGGGSGGGGG
Sbjct: 181 AGACYNCGGFGHLARDCNRGGAGGGSGGGGG 210

[Close]

BLAST of CSPI03G00720 vs. NCBI nr
Match: XP_008448549.1 (PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 cold-shock DNA-binding family protein [Cucumis melo subsp. melo] >KAA0052958.1 cold shock domain-containing protein 3 [Cucumis melo var. makuwa] >TYK11414.1 cold shock domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 9.1e-103
Identity = 209/216 (96.76%), Postives = 209/216 (96.76%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120
           DGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSG 120

Query: 121 AGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGG 180
            GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGG
Sbjct: 121 GGGGGCYQCGEQGHLARDCTRPSNRSGGGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGG 180

Query: 181 GGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GG GGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGSGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 215

[Close]

BLAST of CSPI03G00720 vs. NCBI nr
Match: XP_023551806.1 (cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.4 bits (960), Expect = 7.2e-100
Identity = 204/212 (96.23%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTR SNRGG GGGGGGCFTCGEVGHLARDCPRGNS  GGGGGG G
Sbjct: 121 GGCYQCGEQGHLARDCTRASNRGGVGGGGGGCFTCGEVGHLARDCPRGNS--GGGGGGAG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 208

[Close]

BLAST of CSPI03G00720 vs. NCBI nr
Match: XP_022923189.1 (cold shock domain-containing protein 3-like [Cucurbita moschata])

HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99
Identity = 205/212 (96.70%), Postives = 206/212 (97.17%), Query Frame = 0


Query: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60
           MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD
Sbjct: 1   MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGD 60

Query: 61  DGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 120
           DGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGGYGFGGWRGGDRRNG+SGAGG
Sbjct: 61  DGKSKAIEVVALDGSSGNRRDNF-GGGGGRGGR-GGGGGGYGFGGWRGGDRRNGSSGAGG 120

Query: 121 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 180
           GGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG G
Sbjct: 121 GGCYQCGEQGHLARDCTRASNR-GGGGGGGGCFTCGEVGHLARDCPRGNS-GGGGGGGAG 180

Query: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 213
           GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG
Sbjct: 181 GGACYNCGGFGHLARDCNRGGAGGGSGGGGGG 208

[Close]

BLAST of CSPI03G00720 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 171.4 bits (433), Expect = 8.6e-43
Identity = 122/221 (55.20%), Postives = 142/221 (64.25%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+
Sbjct: 10  RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGG----------GGGGGYGFGGWRGGDRRNG 124
           KAIEV A  G S N+++N   G GG     G          GG GG  FGG  GG RR+G
Sbjct: 70  KAIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGG--GGGRRSG 129

Query: 125 NSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG- 184
               G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G 
Sbjct: 130 ----GEGECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGN 189

Query: 185 --GGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGG 211
             GGGGG G GG  CY CGG GH ARDC + G GG  GGGG
Sbjct: 190 RYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG-GGNVGGGG 223

[Close]

BLAST of CSPI03G00720 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 149.1 bits (375), Expect = 4.6e-36
Identity = 116/224 (51.79%), Postives = 131/224 (58.48%), Query Frame = 0


Query: 5   RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKS 64
           R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+
Sbjct: 10  RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 65  KAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGGY-----GFGGWRGGDRRNGN 124
           KA+ V A  G S  + +N  G G  RGG G G    G  G+     G GG  GG  R   
Sbjct: 70  KAVNVTAPGGGSLKKENNSRGNGARRGGGGSGCYNCGELGHISKDCGIGGGGGGGERRSR 129

Query: 125 SGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGG 184
              GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G 
Sbjct: 130 ---GGEGCYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGN 189

Query: 185 GGGGGG--GGGGACYNCGGFGHLARDCNRGGAGGG--SGGGGGG 213
           G   G   GG   CY CG  GH ARDC +  A G   SGGGG G
Sbjct: 190 GDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSG 230

[Close]

BLAST of CSPI03G00720 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 142.5 bits (358), Expect = 4.3e-34
Identity = 107/201 (53.23%), Postives = 125/201 (62.19%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ +
Sbjct: 9   ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 64  SKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGGYGFGGWRGGDRRNGNSGAGG 123
            KAI+V   DG+   GN      GG GG  GGRGGG G G G+GG  GG    G  G GG
Sbjct: 69  PKAIDVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGG 128

Query: 124 GGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG 183
             CY+CGE GH+ARDC   S  GGG GGGGG    G  G        G  GGGG GGGGG
Sbjct: 129 SDCYKCGEPGHMARDC---SEGGGGYGGGGG----GYGGGGGYGGGGGGYGGGGRGGGGG 188

Query: 184 GGACYNCGGFGHLARDCNRGG 202
           GG+CY+CG  GH ARDC  GG
Sbjct: 189 GGSCYSCGESGHFARDCTSGG 202

[Close]

BLAST of CSPI03G00720 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 135.6 bits (340), Expect = 5.2e-32
Identity = 105/208 (50.48%), Postives = 126/208 (60.58%), Query Frame = 0


Query: 4   ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGK 63
           +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 64  SKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGYGFGGWRGGDRRNGNSGAGGG 123
            KAIEV   DG+        GG  GGRGG GGGG  GGG G G + GG    G+ G GGG
Sbjct: 73  PKAIEVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGG 132

Query: 124 G----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGG 183
           G    C++CGE GH+AR+C    ++GGGG  GGGGG                G  G GGG
Sbjct: 133 GGDNSCFKCGEPGHMAREC----SQGGGGYSGGGGG----------------GRYGSGGG 192

Query: 184 GGGGGGG-ACYNCGGFGHLARDCNRGGA 203
           GGGGGGG +CY+CG  GH ARDC  GGA
Sbjct: 193 GGGGGGGLSCYSCGESGHFARDCTSGGA 200

The following BLAST results are available for this feature:

BLAST of CSPI03G00720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94C69	1.2e-41	55.20	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
P27484	1.3e-38	54.67	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
O65639	6.4e-35	51.79	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]
Q41188	6.0e-33	53.23	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	7.4e-31	50.48	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]

BLAST of CSPI03G00720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4X7	5.4e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G002765 PE=4 SV=1	[more]
A0A5D3CJR2	4.4e-103	96.76	Cold shock domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
E5RDD6	4.4e-103	96.76	Cold-shock DNA-binding family protein OS=Cucumis melo subsp. melo OX=412675 PE=4...	[more]
A0A1S3BKK1	4.4e-103	96.76	cold shock domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103490693 P...	[more]
A0A6J1E5N5	7.8e-100	96.70	cold shock domain-containing protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CSPI03G00720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146143.1	1.1e-108	100.00	cold shock domain-containing protein 3 [Cucumis sativus] >KGN55657.1 hypothetica...	[more]
XP_038876618.1	1.8e-103	97.63	cold shock domain-containing protein 3 [Benincasa hispida]	[more]
XP_008448549.1	9.1e-103	96.76	PREDICTED: cold shock domain-containing protein 3 [Cucumis melo] >ADN33944.1 col...	[more]
XP_023551806.1	7.2e-100	96.23	cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923189.1	1.6e-99	96.70	cold shock domain-containing protein 3-like [Cucurbita moschata]	[more]

BLAST of CSPI03G00720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G17870.1	8.6e-43	55.20	cold shock domain protein 3	[more]
AT4G36020.1	4.6e-36	51.79	cold shock domain protein 1	[more]
AT4G38680.1	4.3e-34	53.23	glycine rich protein 2	[more]
AT2G21060.1	5.2e-32	50.48	glycine-rich protein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 170..180 score: 45.45 coord: 143..158 score: 45.31 coord: 203..221 score: 39.47 coord: 84..95 score: 44.79
None	No IPR available	GENE3D	4.10.60.10		coord: 109..146 e-value: 2.4E-6 score: 29.1 coord: 147..174 e-value: 1.2E-7 score: 33.3 coord: 179..206 e-value: 2.1E-5 score: 26.0
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 3.6E-25 score: 89.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..96
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 113..145
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..112
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 139..213
None	No IPR available	PANTHER	PTHR46565:SF12	COLD SHOCK PROTEIN 2	coord: 1..112
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 139..213
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 113..145
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 8..23 score: 61.03 coord: 44..62 score: 40.09 coord: 29..38 score: 59.44
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 7..71 e-value: 8.5E-23 score: 80.0
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 5..71 score: 30.335478
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 7..69 e-value: 2.15205E-24 score: 89.9454
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 7..72 e-value: 1.5E-24 score: 97.6
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 122..138 e-value: 2.9E-4 score: 30.2 coord: 183..199 e-value: 4.0E-4 score: 29.7 coord: 151..167 e-value: 2.6E-5 score: 33.7
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 151..166 e-value: 9.5E-8 score: 31.8 coord: 122..137 e-value: 2.4E-6 score: 27.4 coord: 183..197 e-value: 2.9E-6 score: 27.1
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 152..167 score: 11.086722
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 123..138 score: 11.004309
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 184..197 score: 10.476859
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 19..38
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 169..198
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 113..169
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 4..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00720.1	CSPI03G00720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding