CSPI03G00580 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G00580
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	SKP1-like protein
Location	Chr3: 415390 .. 417143 (-)
RNA-Seq Expression	CSPI03G00580
Synteny	CSPI03G00580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCACCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGTACTTCCTTTTTTCTTCACTCCTCAGATACAATTGCTTTCAACGTTGGTCTCAAAGGGAAAGTTCTACTGGAAATTGTTTTGTATATTGAAGTTATCCGTTTTCGATCAATGGGTATGGTGTCTCCCACAGATTAATGAAATCTTGTTTTTTGTATAGTATCTTTATATAGTGTTGAATTAATGATAACCATGGTCATGTCTATTGCGAATTCATTTTTCTCTACCCCACCCCCACCGCCATATTCATAAAAAGTGTGAGAAAAATGAAGATCAGGATAATGATCTCTAATGTGATACTATATAAAAAGGAGACAGAAATACGCTGAGACGTAAGAAGAAAACTAGATTTCATTTGTTTGTGAAGATGGGTCATTAATCATTTACATGGCCGAGAATGGGTCTTCTGTAGAAAAAACTTCAAAAAATTTATTATGACAGGTTTAATGCTTTTGCCATTCTCCCTAAGATTGATACTAATGAACGTCTGTCTCCGGCTAATCCTCCACAAGATAGGAGTGCAAAACTAATTGCTAAAAGGACTCCAATCCAAAAGAACGAGAACAGTATCATATTACACGACAGTCTAGTGACCTACTACCAAACAGAAGCATTAAACCTCACCAACTCTCAAACCTCCTCTCTAGACTTCTTCACATCCCTAAGAATTTTACTATTACACTCCAACCAAATACCCCAAAAAATTCCAAAGGAAATTCGTGGATTTACACTCCACAACAAATGATCTAGATCCTCTTGATGCTCATGGCGAGCACCATTGCGGACCCAAGAATTAACTCTCTCGCCAAGCATTAACCTTTTTTTGGAACTTCTGTCTTCCACAGAGATTAGGCGACTCAAAGCCTTGGGAGCACTCGATTGAGCAGGGAAAGTGGATGAAAGGTTAAAATGGGAATGACAAGAAAGCCCCCTAGCAGGGTTAGGGAACCACCTCCTGACATCCTTTCCCCTATGAACAGTAAGACAATCTCAAGGATAAGAAGGAGATCCTTAGGAATTGAATAATGTCTAGGAGATGACAACACCGAGGTGACAGGATTTATTCATTGTCAAATGAAATGATTGTGGCTTAGTTTAACGTTGATAAACTTGATTTGTTGTCCATATGTCAACAGCTATGATTTACCATGCTCTACATTATGCTGTGTTCTTGTTGCATAGAGTTTCAAGCTGCCTGGGGAATTTTTTTACTATTATTATTGTTGATCATAGTCTTTTCTTGATTTGGCGCCATGTTAAAATTCTCTCGTTTATTCTACAATGCAGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCGGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

mRNA sequence

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCACCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCGGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

Coding sequence (CDS)

ATGTCCTCCTCCAACAAAATCACTCTCAAGAGCTCCGATGGCGACTATTTCCAAGTCGACGATGCCGTTGCCCTCCAATCTCAGACCATCCGCCATATGATCGAAGACAACTGCGCCCATAACGGCATCCCTCTTCCCAACGTCAACAGTAAAATTCTCGCCAAAGTCATCCAGTACTGCCGTAAACACGTTGATGCTTCCTCCACCGATCCCCTCCCCTCCGAAGACGATCTCAAGACCTGGGATCGTGACTTTGTTAATGTCGATCAGGCTACTCTTTTCGATCTCATTCTGGCTGCAAATTATCTGGACGTCAAGAGCTTGTTAGACCTGACATGTCAGACTGTAGCTGACATGATCAAGGGAAAGAAGCCGGAGGAGATTCGAAAAACCTTCAACATCAAGAACGACTTCACACCGGCGGAAGAGGAGGAAGTTCGCAGGGAGAATCAGTGGGCTTGTGAATGA

Protein sequence

MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE*

Homology

[Close]

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot
Match: Q6PL11 (SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 7.0e-62
Identity = 119/164 (72.56%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHV-- 66
           ITLKSSDG+ F+V++AVA++SQTIRHMIED+CA NGIPLPNVNSKIL+KVI+YC KHV  
Sbjct: 10  ITLKSSDGEEFEVEEAVAMESQTIRHMIEDDCADNGIPLPNVNSKILSKVIEYCNKHVHA 69

Query: 67  -------------DASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDL 126
                         A++  P PS +DLK WD DFV VDQATLFDLILAANYL++K LLDL
Sbjct: 70  AAAAASKAADDAASAAAAVPPPSGEDLKNWDADFVKVDQATLFDLILAANYLNIKGLLDL 129

Query: 127 TCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           TCQTVADMIKGK PEEIRKTFNIKNDFTP EEEE+RRENQWA E
Sbjct: 130 TCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 173

[Close]

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot
Match: Q9FHW7 (SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.7e-61
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MS+  KITLKSSDG+ F++D+AVAL+SQTI+HMIED+C  NGIPLPNV SKIL+KVI+YC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDASSTDPL----------------PSEDDLKTWDRDFVNVDQATLFDLILAANYLD 120
           ++HV+A+                      S++DLKTWD +F+ VDQ TLFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 VKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           +K LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot
Match: Q39255 (SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.8e-60
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           S+ KI LKSSDG+ F+V++AVAL+SQTI HM+ED+C  NG+PLPNV SKILAKVI+YC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASST------DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTV 122
           HV+A+++          S+DDLK WD DF+ +DQATLF+LILAANYL++K+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ADMIKGK PEEIR TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot
Match: Q651E8 (SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 4.4e-56
Identity = 112/165 (67.88%), Postives = 130/165 (78.79%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVD- 66
           ITL+S +G  F+V +AVA++SQTIRHMIED CA  GIPLPNV++KIL+KVI+YC KHV+ 
Sbjct: 11  ITLRSCEGQVFEVAEAVAMESQTIRHMIEDKCADTGIPLPNVSAKILSKVIEYCSKHVEA 70

Query: 67  -------ASSTDPLPS--------EDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLD 126
                  A    P P+        ED+LKT+D +FV VDQ+TLFDLILAANYL++K LLD
Sbjct: 71  RGGAAAAADGDAPAPAAVEANKAVEDELKTFDAEFVKVDQSTLFDLILAANYLNIKGLLD 130

Query: 127 LTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           LTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 131 LTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 175

[Close]

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot
Match: O49484 (SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 5.9e-53
Identity = 102/153 (66.67%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKG 122
           H      +P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANPI-SEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           K PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL
Match: A0A0A0L1L3 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G002630 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.3e-82
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC
Sbjct: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASS DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE
Sbjct: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 155

[Close]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL
Match: A0A1S3BJV5 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 141/155 (90.97%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHV+ASS DP PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMI
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL
Match: A0A6J1HJY3 (SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASS DP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL
Match: A0A5A7UGS7 (SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00530 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 11  SSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSTD 70
           +SDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YCRKHV+ASS D
Sbjct: 14  TSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYCRKHVNASSLD 73

Query: 71  PLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRK 130
           P PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMIKGK PEEIRK
Sbjct: 74  PAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRK 133

Query: 131 TFNIKNDFTPAEEEEVRRENQWACE 156
           TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 134 TFNIKNDFTPEEEEEVRRENQWAFE 158

[Close]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL
Match: A0A6J1CWB0 (SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.0e-68
Identity = 131/155 (84.52%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KI LKSSDG+ F+VD+AVAL+SQTIRHMIED+CA NGIPLPNV+SKILAKVI+YC
Sbjct: 1   MSSSKKIILKSSDGEPFEVDEAVALESQTIRHMIEDDCADNGIPLPNVSSKILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDAS+++P  SE+DLK WDRDFVNVDQATLFDLILAANYL++K+LLDLTCQTVADMI
Sbjct: 61  RKHVDASNSEPRASEEDLKAWDRDFVNVDQATLFDLILAANYLNIKNLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. NCBI nr
Match: XP_004146156.1 (SKP1-like protein 1 [Cucumis sativus] >KGN55643.1 hypothetical protein Csa_010015 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.3e-81
Identity = 154/155 (99.35%), Postives = 154/155 (99.35%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC
Sbjct: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASS DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE
Sbjct: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 155

[Close]

BLAST of CSPI03G00580 vs. NCBI nr
Match: XP_008448523.1 (PREDICTED: SKP1-like protein 1B [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 5.0e-73
Identity = 141/155 (90.97%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHV+ASS DP PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMI
Sbjct: 61  RKHVNASSLDPAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. NCBI nr
Match: XP_038903121.1 (SKP1-like protein 1A [Benincasa hispida])

HSP 1 Score: 273.9 bits (699), Expect = 8.8e-70
Identity = 136/155 (87.74%), Postives = 143/155 (92.26%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDGD F+VD+AVALQSQTIRHMIED+CA NGIPLPNV S ILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGDSFEVDEAVALQSQTIRHMIEDDCADNGIPLPNVTSNILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
           RKHVDASS DP  S+DDLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  RKHVDASSADPRLSDDDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. NCBI nr
Match: XP_022965297.1 (SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015829.1 SKP1-like protein 1A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 132/155 (85.16%), Postives = 142/155 (91.61%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MSSS KITLKSSDG+ F++D+ VAL+SQTIRHMIED+CA NGIPLPNV SKILAKVI+YC
Sbjct: 1   MSSSKKITLKSSDGESFEIDEVVALESQTIRHMIEDDCADNGIPLPNVTSKILAKVIEYC 60

Query: 61  RKHVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMI 120
            KHVDASS DP  SE+DLK WDRDFVNVDQATLFDLILAANYL++KSLLDLTCQTVADMI
Sbjct: 61  HKHVDASSADPRVSEEDLKAWDRDFVNVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 120

Query: 121 KGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           KGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155

[Close]

BLAST of CSPI03G00580 vs. NCBI nr
Match: KAA0052945.1 (SKP1-like protein 1B [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 3.7e-68
Identity = 131/145 (90.34%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 11  SSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSTD 70
           +SDGDYF+VD AVALQSQTIRHMIED+CA NGIPLPNVNSKILAKVI+YCRKHV+ASS D
Sbjct: 14  TSDGDYFEVDGAVALQSQTIRHMIEDSCADNGIPLPNVNSKILAKVIEYCRKHVNASSLD 73

Query: 71  PLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRK 130
           P PS DDLKTWDRDFVNVDQATLFDLILAANYLD+KSLLDLTCQTVADMIKGK PEEIRK
Sbjct: 74  PAPSVDDLKTWDRDFVNVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRK 133

Query: 131 TFNIKNDFTPAEEEEVRRENQWACE 156
           TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 134 TFNIKNDFTPEEEEEVRRENQWAFE 158

[Close]

BLAST of CSPI03G00580 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 234.6 bits (597), Expect = 5.5e-62
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 1   MSSSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYC 60
           MS+  KITLKSSDG+ F++D+AVAL+SQTI+HMIED+C  NGIPLPNV SKIL+KVI+YC
Sbjct: 1   MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYC 60

Query: 61  RKHVDASSTDPL----------------PSEDDLKTWDRDFVNVDQATLFDLILAANYLD 120
           ++HV+A+                      S++DLKTWD +F+ VDQ TLFDLILAANYL+
Sbjct: 61  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLN 120

Query: 121 VKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           +K LLDLTCQTVADMIKGK PEEIRKTFNIKNDFTP EEEEVRRENQWA E
Sbjct: 121 IKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171

[Close]

BLAST of CSPI03G00580 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-61
Identity = 112/159 (70.44%), Postives = 135/159 (84.91%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           S+ KI LKSSDG+ F+V++AVAL+SQTI HM+ED+C  NG+PLPNV SKILAKVI+YC++
Sbjct: 2   SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKR 61

Query: 63  HVDASST------DPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTV 122
           HV+A+++          S+DDLK WD DF+ +DQATLF+LILAANYL++K+LLDLTCQTV
Sbjct: 62  HVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTV 121

Query: 123 ADMIKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ADMIKGK PEEIR TFNIKNDFTP EEEEVRRENQWA E
Sbjct: 122 ADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160

[Close]

BLAST of CSPI03G00580 vs. TAIR 10
Match: AT4G34210.1 (SKP1-like 11 )

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-54
Identity = 102/153 (66.67%), Postives = 125/153 (81.70%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  HVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKG 122
           H      +P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSLLDLTCQTVADMIKG
Sbjct: 62  H-HVDEANPI-SEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKG 121

Query: 123 KKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           K PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 KTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CSPI03G00580 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 205.7 bits (522), Expect = 2.7e-53
Identity = 103/154 (66.88%), Postives = 126/154 (81.82%), Query Frame = 0


Query: 3   SSNKITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRK 62
           SS  I L SSDG  F+V++AVA+QSQTI HM+ED+C  +GIPL NV SKIL KVI+YC+K
Sbjct: 2   SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKK 61

Query: 63  -HVDASSTDPLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIK 122
            HVD    +P+ SE+DL  WD  F++++Q+T+F+LILAANYL++KSL DLTCQTVADMIK
Sbjct: 62  YHVD--EANPI-SEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIK 121

Query: 123 GKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           GK PEEIR TFNI+NDFTP EEE VR+ENQWA E
Sbjct: 122 GKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152

[Close]

BLAST of CSPI03G00580 vs. TAIR 10
Match: AT1G20140.1 (SKP1-like 4 )

HSP 1 Score: 198.4 bits (503), Expect = 4.4e-51
Identity = 96/156 (61.54%), Postives = 121/156 (77.56%), Query Frame = 0


Query: 7   ITLKSSDGDYFQVDDAVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDA 66
           I LKSSDG+ F++++AVA++SQTI+HMIED+CA NGIPLPNV   ILAKVI+YC+KHV+A
Sbjct: 8   IILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEA 67

Query: 67  SSTD-------PLPSEDDLKTWDRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADM 126
           ++              D+LK WD +FV VDQ TLFDLILAANYL++  LLDLTC+ VAD 
Sbjct: 68  AAEAGGDKDFYGSAENDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQ 127

Query: 127 IKGKKPEEIRKTFNIKNDFTPAEEEEVRRENQWACE 156
           ++GK PE++R  FNIKND+TP EE EVR EN+WA E
Sbjct: 128 MRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163

The following BLAST results are available for this feature:

BLAST of CSPI03G00580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PL11	7.0e-62	72.56	SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1	[more]
Q9FHW7	7.7e-61	67.84	SKP1-like protein 1B OS=Arabidopsis thaliana OX=3702 GN=SKP1B PE=1 SV=1	[more]
Q39255	3.8e-60	70.44	SKP1-like protein 1A OS=Arabidopsis thaliana OX=3702 GN=SKP1A PE=1 SV=1	[more]
Q651E8	4.4e-56	67.88	SKP1-like protein 20 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP20 PE=1 SV=1	[more]
O49484	5.9e-53	66.67	SKP1-like protein 11 OS=Arabidopsis thaliana OX=3702 GN=ASK11 PE=1 SV=1	[more]

BLAST of CSPI03G00580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1L3	6.3e-82	99.35	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G002630 PE=3 SV=1	[more]
A0A1S3BJV5	2.4e-73	90.97	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103490674 PE=3 SV=1	[more]
A0A6J1HJY3	1.0e-68	85.16	SKP1-like protein OS=Cucurbita maxima OX=3661 GN=LOC111465205 PE=3 SV=1	[more]
A0A5A7UGS7	1.8e-68	90.34	SKP1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00...	[more]
A0A6J1CWB0	3.0e-68	84.52	SKP1-like protein OS=Momordica charantia OX=3673 GN=LOC111014883 PE=3 SV=1	[more]

BLAST of CSPI03G00580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146156.1	1.3e-81	99.35	SKP1-like protein 1 [Cucumis sativus] >KGN55643.1 hypothetical protein Csa_01001...	[more]
XP_008448523.1	5.0e-73	90.97	PREDICTED: SKP1-like protein 1B [Cucumis melo]	[more]
XP_038903121.1	8.8e-70	87.74	SKP1-like protein 1A [Benincasa hispida]	[more]
XP_022965297.1	2.2e-68	85.16	SKP1-like protein 1A [Cucurbita maxima] >KAG6577790.1 SKP1-like protein 1A, part...	[more]
KAA0052945.1	3.7e-68	90.34	SKP1-like protein 1B [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G00580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42190.1	5.5e-62	67.84	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	2.7e-61	70.44	S phase kinase-associated protein 1	[more]
AT4G34210.1	4.2e-54	66.67	SKP1-like 11	[more]
AT4G34470.1	2.7e-53	66.88	SKP1-like 12	[more]
AT1G20140.1	4.4e-51	61.54	SKP1-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 4..105 e-value: 3.0E-49 score: 179.6
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 5..64 e-value: 3.2E-27 score: 94.5
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 106..153 e-value: 1.7E-28 score: 98.3
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..155 e-value: 3.1E-65 score: 216.9
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 1..154
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..155 e-value: 2.3E-71 score: 241.1
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 6..65
None	No IPR available	PANTHER	PTHR11165:SF145	PUTATIVE-RELATED	coord: 1..154
None	No IPR available	CDD	cd18322	BTB_POZ_SKP1	coord: 6..120 e-value: 2.34705E-58 score: 175.473
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 78..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00580.1	CSPI03G00580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding