CSPI02G27220 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G27220
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 23229084 .. 23229491 (-)
RNA-Seq Expression	CSPI02G27220
Synteny	CSPI02G27220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGTATGAAAGAAGAGGGAAGAAGAGGAGAATGGAAAGGAATGGAGAGAAGGGATTACGAGAATGAGAGGGGGGATTATGGGATGGAGTTTGAGGGATCACTTCTACAAATTAGGACTTCAACCATGCAAATTGACGAAAATTAGGACTTCAACGACCCAAAATTTGCGTCATCTAACGACAAATGCTCAATCATCTCGATTGCTGACGATGAAGAAGAACCAACCGAGATGCCTAGTCATTCCTACTAAAAAGGTGGATCTGACTGCAAATGCTCGATTGTCGCCTAGTACAAGTTGGATCGCCGACGGCAAACTTACTCCGGCAAACGATTGCAAAAAGAAAAGAAGAAGTTCTTACTCGAACAAAAAAGAAGAGAAAAAAGAAGAGAAAAAGGAAGAAAGATAA

mRNA sequence

GGAGTATGAAAGAAGAGGGAAGAAGAGGAGAATGGAAAGGAATGGAGAGAAGGGATTACGAGAATGAGAGGGGGGATTATGGGATGGAGTTTGAGGGATCACTTCTACAAATTAGGACTTCAACCATGCAAATTGACGAAAATTAGGACTTCAACGACCCAAAATTTGCGTCATCTAACGACAAATGCTCAATCATCTCGATTGCTGACGATGAAGAAGAACCAACCGAGATGCCTAGTCATTCCTACTAAAAAGGTGGATCTGACTGCAAATGCTCGATTGTCGCCTAGTACAAGTTGGATCGCCGACGGCAAACTTACTCCGGCAAACGATTGCAAAAAGAAAAGAAGAAGTTCTTACTCGAACAAAAAAGAAGAGAAAAAAGAAGAGAAAAAGGAAGAAAGATAA

Coding sequence (CDS)

ATGAGAGGGGGGATTATGGGATGGAGTTTGAGGGATCACTTCTACAAATTAGGACTTCAACCATGCAAATTGACGAAAATTAGGACTTCAACGACCCAAAATTTGCGTCATCTAACGACAAATGCTCAATCATCTCGATTGCTGACGATGAAGAAGAACCAACCGAGATGCCTAGTCATTCCTACTAAAAAGGTGGATCTGACTGCAAATGCTCGATTGTCGCCTAGTACAAGTTGGATCGCCGACGGCAAACTTACTCCGGCAAACGATTGCAAAAAGAAAAGAAGAAGTTCTTACTCGAACAAAAAAGAAGAGAAAAAAGAAGAGAAAAAGGAAGAAAGATAA

Protein sequence

MRGGIMGWSLRDHFYKLGLQPCKLTKIRTSTTQNLRHLTTNAQSSRLLTMKKNQPRCLVIPTKKVDLTANARLSPSTSWIADGKLTPANDCKKKRRSSYSNKKEEKKEEKKEER*

Homology

[Close]

BLAST of CSPI02G27220 vs. ExPASy TrEMBL
Match: A0A5A7TJ00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00500 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.4e-07
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 54  QPRCLVIPTKKVDLTANARLSPSTSWIADGKLTPANDCKKKRRSSYSNKKEEKKEEKK 112
           + RCL+IPTK VDL AN R SPS SWIADG++T ANDCKKK       KK++K+++KK
Sbjct: 30  EQRCLIIPTKAVDLMANVRSSPSRSWIADGRVTSANDCKKK-------KKKKKRKKKK 80

[Close]

BLAST of CSPI02G27220 vs. NCBI nr
Match: KAA0043383.1 (hypothetical protein E6C27_scaffold588G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 54  QPRCLVIPTKKVDLTANARLSPSTSWIADGKLTPANDCKKKRRSSYSNKKEEKKEEKK 112
           + RCL+IPTK VDL AN R SPS SWIADG++T ANDCKKK       KK++K+++KK
Sbjct: 30  EQRCLIIPTKAVDLMANVRSSPSRSWIADGRVTSANDCKKK-------KKKKKRKKKK 80

The following BLAST results are available for this feature:

BLAST of CSPI02G27220 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G27220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJ00	8.4e-07	60.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CSPI02G27220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043383.1	1.7e-06	60.34	hypothetical protein E6C27_scaffold588G00500 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G27220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 96..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G27220.1	CSPI02G27220.1	mRNA