CSPI02G26950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G26950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrotransposable element Tf2
Location	Chr2: 22958979 .. 22959458 (+)
RNA-Seq Expression	CSPI02G26950
Synteny	CSPI02G26950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCTCCTTCCGGCCGGCAATGGCCACCCAACCAGCGGCAACCGCTGCTAAATAATCCAAACAAAAATCCTCAAGGACCACCTCGAACAGTAGCTTCCTCTTCAGGAACTACTTCTCCCAGGGAAAAATCCCCGACTCAATCATCTACACCGTCACCGATGAGTGTAGAAAACTATGCCATGGATTTACAATTTGAGCAAGTATCCAGGTGTCGTCAAGGCTCTGCTAACAGAGCATTGACAATCCAAACAGACTCTTCGAGTCTTCCCCCCCATACCTTCAAGCACGTTGTTGCGACCTTCTGGGCCGACAACTCCAAACAAGCGTGTCGCATCATCGGTCGCTTCCTCCTCAAGGTCTGCAATTCCATGGAATCCATCCTCGTATTCCCAGATTGTACGACCAAAAGTCTTCCAGCCAAGACCACCAATTACTGGTTATTTCACCAAAACAACAACGGTGGATTTGACCATTGA

mRNA sequence

ATGGAACCTCCTTCCGGCCGGCAATGGCCACCCAACCAGCGGCAACCGCTGCTAAATAATCCAAACAAAAATCCTCAAGGACCACCTCGAACAGTAGCTTCCTCTTCAGGAACTACTTCTCCCAGGGAAAAATCCCCGACTCAATCATCTACACCGTCACCGATGAGTGTAGAAAACTATGCCATGGATTTACAATTTGAGCAAGTATCCAGGTGTCGTCAAGGCTCTGCTAACAGAGCATTGACAATCCAAACAGACTCTTCGAGTCTTCCCCCCCATACCTTCAAGCACGTTGTTGCGACCTTCTGGGCCGACAACTCCAAACAAGCGTGTCGCATCATCGGTCGCTTCCTCCTCAAGGTCTGCAATTCCATGGAATCCATCCTCGTATTCCCAGATTGTACGACCAAAAGTCTTCCAGCCAAGACCACCAATTACTGGTTATTTCACCAAAACAACAACGGTGGATTTGACCATTGA

Coding sequence (CDS)

ATGGAACCTCCTTCCGGCCGGCAATGGCCACCCAACCAGCGGCAACCGCTGCTAAATAATCCAAACAAAAATCCTCAAGGACCACCTCGAACAGTAGCTTCCTCTTCAGGAACTACTTCTCCCAGGGAAAAATCCCCGACTCAATCATCTACACCGTCACCGATGAGTGTAGAAAACTATGCCATGGATTTACAATTTGAGCAAGTATCCAGGTGTCGTCAAGGCTCTGCTAACAGAGCATTGACAATCCAAACAGACTCTTCGAGTCTTCCCCCCCATACCTTCAAGCACGTTGTTGCGACCTTCTGGGCCGACAACTCCAAACAAGCGTGTCGCATCATCGGTCGCTTCCTCCTCAAGGTCTGCAATTCCATGGAATCCATCCTCGTATTCCCAGATTGTACGACCAAAAGTCTTCCAGCCAAGACCACCAATTACTGGTTATTTCACCAAAACAACAACGGTGGATTTGACCATTGA

Protein sequence

MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENYAMDLQFEQVSRCRQGSANRALTIQTDSSSLPPHTFKHVVATFWADNSKQACRIIGRFLLKVCNSMESILVFPDCTTKSLPAKTTNYWLFHQNNNGGFDH*

Homology

[Close]

BLAST of CSPI02G26950 vs. ExPASy TrEMBL
Match: A0A5A7TBK1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00520 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQPL N+ N NPQ PP++VA+SSGTT  R+KSP QSS PSPMS ENY
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. ExPASy TrEMBL
Match: A0A5D3D2Q6 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00560 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQPL N+ N NPQ PP++VA+SSGTT  R+KSP QSS PSPMS ENY
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. ExPASy TrEMBL
Match: A0A5A7SQU5 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001670 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP  RQ PPN+RQP  NN N +   PP++VASSSGTT  R++ P+QSS PSPMS ENY
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. ExPASy TrEMBL
Match: A0A5D3DX32 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003460 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP  RQ PPN+RQP  NN N +   PP++VASSSGTT  R++ P+QSS PSPMS ENY
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. ExPASy TrEMBL
Match: A0A5A7U3G5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQ   +N N +PQ PP+T+ SSS TT  + K  TQSS PS MS ENY
Sbjct: 1  MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR  QGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. NCBI nr
Match: KAA0040832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQPL N+ N NPQ PP++VA+SSGTT  R+KSP QSS PSPMS ENY
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. NCBI nr
Match: TYK17808.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 71/92 (77.17%), Postives = 77/92 (83.70%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQPL N+ N NPQ PP++VA+SSGTT  R+KSP QSS PSPMS ENY
Sbjct: 1  MEPPPGRQRPRNQRQPLQNSQNSNPQRPPQSVATSSGTTPSRKKSPAQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAQRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. NCBI nr
Match: TYK28082.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP  RQ PPN+RQP  NN N +   PP++VASSSGTT  R++ P+QSS PSPMS ENY
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. NCBI nr
Match: KAA0032918.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 3.7e-23
Identity = 66/92 (71.74%), Postives = 74/92 (80.43%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP  RQ PPN+RQP  NN N +   PP++VASSSGTT  R++ P+QSS PSPMS ENY
Sbjct: 1  MEPPPDRQRPPNERQPPPNNQNNSSLKPPQSVASSSGTTPSRKEFPSQSSAPSPMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR RQGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRRQGSAKRTLTIQSDSSSLPP 92

[Close]

BLAST of CSPI02G26950 vs. NCBI nr
Match: KAA0050443.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-20
Identity = 63/92 (68.48%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 1  MEPPSGRQWPPNQRQPLLNNPNKNPQGPPRTVASSSGTTSPREKSPTQSSTPSPMSVENY 60
          MEPP GRQ P NQRQ   +N N +PQ PP+T+ SSS TT  + K  TQSS PS MS ENY
Sbjct: 1  MEPPPGRQLPLNQRQSPQSNQNNSPQRPPQTIVSSSETTPSKGKPSTQSSAPSLMSAENY 60

Query: 61 AMDLQFEQVSRCRQGSANRALTIQTDSSSLPP 93
          AMDLQFEQVSR  QGSA R LTIQ+DSSSLPP
Sbjct: 61 AMDLQFEQVSRRHQGSAQRTLTIQSDSSSLPP 92

The following BLAST results are available for this feature:

BLAST of CSPI02G26950 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G26950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TBK1	6.0e-27	77.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3D2Q6	6.0e-27	77.17	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SQU5	1.8e-23	71.74	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3DX32	1.8e-23	71.74	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U3G5	1.4e-20	68.48	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G00490 PE...	[more]

BLAST of CSPI02G26950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040832.1	1.2e-26	77.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK17808.1	1.2e-26	77.17	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
TYK28082.1	3.7e-23	71.74	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0032918.1	3.7e-23	71.74	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]
KAA0050443.1	2.9e-20	68.48	polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G26950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G26950.1	CSPI02G26950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901800	positive regulation of proteasomal protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000502	proteasome complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0036402	proteasome-activating activity