CSPI02G24950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G24950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial transcription termination factor family protein isoform 2
Location	Chr2: 21354572 .. 21359659 (+)
RNA-Seq Expression	CSPI02G24950
Synteny	CSPI02G24950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGTTATGTTATGTGGTTGTGGCTTTAGGCTACAAGCAAAGGACACGAAGATTGGTCTCTTAGTGTGAACATACTCTGTGGTTCGCCCTTCTTCTTCTTCAATCTCCGCCCCACAATCTCAACTCTAAATAAGCTGTTCACTTCCAATCCCTCTAATTTCAGGTACAATTCCTCCAATTTCATCTCCATAATCTGTCTGCATTTCTTTCATTAATTTTACTTCTGCTGGAATCCTTGTTTCGTTTTGTATAACGTACCACCTTTTATTAATTGGACTTACTTAACTGTTTCTTTTTCGCATTCGGTTTTGATCGGAATTCAGTTCAATTAAGAGAATATTCATATATATGCCCCCTTGAGCTTCTGATCCTATTCTGAACAACCAGTTCAACTCTGTACCTGTATACTGCCGATACTACCTTATTGAAGATGATATCATATGATTCACTTCTGATCGTTGAGAAAGACATTGGTTGAAATTTTTGCTGAATGATATAATAAAAAACGTAGTGGCTGCATTGTTTGGAAGATCATGTCAGGTTGTGCAGTAACTTCTTTTTAACATGCTGGAGTATTCGCTATTCGTTAAACGACATCTTGACCATGGGATAATCCCTAGATCGGTAATAATAATAATCAAGCATGTGATTTTAAAATAATCAAGCATGTAATTTTAAAATGAAAATTCAAATTAAGGTGGAGAGTAAAATACCACGGATTGAAGTCGAAATTTCCATAATGGGCTACAATGAGTTTTTTCCTAGTCTCATGAGTAATTCTGGTTCTTTGTGTGAATGACCCATGAATGTGATTGAACTCAATTACCAAATTCAATGACTGCATATCAAATCTTCTTTAAGAGGATCTCAGATTCTCAACCACTTTTGGTTCACTCTTCATGTACTTATGTTTTTTTTGTTTCCATGAATCTTTTGAAAGCTCTATTTTGAGCATGGTAACCAATCTTACCTGTGGGAACTGAATTTGAAGAGATCCTAGTTAGCCACCTGTCTGCATAGGGTTGCCTATTATTTTGTGACAGCATGTTATTTCGGAATTCAAAACTTCGCACTCTTGAATGATTTCACTATAGCCTTCAGTTAAAAATATTTTTGTGGGAGCATCTATTGTTATATCTATCTGGAGGCATACTTGTGAAACTTTAAGTTCTTGTTGAGGCCTTTCTATCTACTCAGTTCTTGTTGGATTGTCCTTTATTCCAATTTCCGGTGACTTTCTTGATCAAAGTCCTCTTCTTCTCTTGAACTCAGAACTTGGATAAAGCTGACCATCTCAATAGACTAAGACATAATTTTGGGAGGAATTTTGTCTACTACCTCGTTGATCAACTGTAATTGGTAGTAAGGCTATTTAAAAAATATTTTTGTTAGACGTAATTATAAAGAAAATTGCATCAAATGACAAAAACATTTAGAAAAAAACAGATCATGACACTTATTTTTTGCATATTGTGAATATGGCAAAATTAGTGATAGCGGCCATCAGGTGGTAATCATAGGGTTATCGGCTTTTAAATTTGTTACTTTTGCAATTTAAAAATGTAGTGACATAAGTCTTATTATCATAATTTATTTTGTTATTTTTGCAAGGGCCCCTAATTATAACTTGAAAACTCTGTCTTTGATAGAACACATCTTTGCATTAACTTGCTTGGATCCTCTCCATATTTGAGTGAAACTCATTATTGGTTCAAATAAAATGTTTTAATAAAATCTAGAAATTCTTTGATGCTCAAATGTTGTAAAATCAGGTGGGATGTCCCGTGACATAAGTCAAGGTTCATGTAAGCTGACCTAGACACTCACATGTATCAAAAAAGAATTGGAAGAAACTTTTGTGTGAGATGGTACATGCTTTATGAATGGTAAACGTGTTATGATAATCACATTTTTTATAGTTGGTACAGCTGGCTCTAACCAAACTTCTTAATATGCTACAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTGTGAGTAGCAAATTTTGCCTCTTATAGTTAAATGCTATGGGAATACACATCATAATAGAGAAAATATTAGGTGCTAATGGGACTAATCCCATGTTGGGAAGAGAAAGAACCATAATATACTAGTAAGGACGGATATCTTTATTAATACGAGGTCTTTTAGGTGATTTCAATAATCATACCATTGAGGAGATATGTGAAGGTTTAGTAGGTTTTTTTTTTTTTTTTGCAGGAATGCAATGGGAAATGAGCAAATAATTGTTACATCATTTACTTCATACTTATATTGTTTGCATTGCTCAAATAATGTTTTTATAATTTCTCTTTTTAGGATTTCATAACTTATTCTTAATTCTCAATGCAGCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTGTAGCCACAACACTGTATTCATGCATATTAAATTGTTAGAATTAAGAATATAAACGGTCAAACCTTGTACAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCGAAATTGTGAAATGGGAAGCAAGACAATTGAATATGTTTAGCGTAATGGAG

mRNA sequence

AGGGGTTATGTTATGTGGTTGTGGCTTTAGGCTACAAGCAAAGGACACGAAGATTGGTCTCTTAGTGTGAACATACTCTGTGGTTCGCCCTTCTTCTTCTTCAATCTCCGCCCCACAATCTCAACTCTAAATAAGCTGTTCACTTCCAATCCCTCTAATTTCAGGGATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAGGTACATTTTCTTTTCAGAATTTCTTATGTTGACTAATGATATTGAACTGTAGCCACAACACTGTATTCATGCATATTAAATTGTTAGAATTAAGAATATAAACGGTCAAACCTTGTACAACAATTCAATGTTCAGAGAAAGATCTTCTTCAACTAAACACATAAGAGTTCGAAATTGTGAAATGGGAAGCAAGACAATTGAATATGTTTAGCGTAATGGAG

Coding sequence (CDS)

ATGCTAGGAAAGTCGTTGGCGTCCCCCATATCAACCATTGATTCTGCTACTCGTTTCTGCTGTTCTACTCGCTGCACTGCCACAGCCATATCAGATGCTGTATGTTCACATGTGAGTTTCTCCTGTCATTCTGCAAAGCATACGATAAAGGGTGTGAGAAGACAAAATCCCTATCCTAGGAAGTGGGAAATCTGTTCATCTACTCAAGTTGAAAGCTTAATATTTAGTGATGAAGATAAGAAGACATGGGAGGCTTGTCGGCAAGCTCTGTCTGTGTTCAGCTTCAGTGTTGAGGAGCAAGATAAGATGCTTGGAAAGGCGTTCGGCCACATTCATTCACCCTACTGGGGTGAAGACAGAGAGAAGAAAGTTCCTAATATTGAAATTGTAAATGATATACTGGAATATCTGAGGACGCTTGGCCTTTCTAATGACGATCTCTCTAAGCTGCTAAAGAAATTCCCGGAAGTTCTTGGCTGCAATCTTGAGCAGGAGCTGAAAACCAACGTACAATTGTTGGACAAAGAGTGGGGAATTCAAGGCAAATCACTAAGGAATCTTCTTCTGCGTAATCCCAAGGTATTGGGTTATTATGTTGATTGTAAAGGAGACTGCATAGCAAAATGCACCAGATGCTGGGTTCGATTCTAG

Protein sequence

MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPRKWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF*

Homology

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BLAST of CSPI02G24950 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.1e-04
Identity = 21/68 (30.88%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 132 IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLL 191
           I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++
Sbjct: 286 IIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSII 345

Query: 192 LRNPKVLG 200
            + P+++G
Sbjct: 346 AQYPEIIG 352

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BLAST of CSPI02G24950 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.4e-04
Identity = 21/69 (30.43%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 131 EIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNL 190
           +I+   +E+L  +GL    ++++++K P VLG  LE ++K N++ L  E+G++ ++L  +
Sbjct: 250 KIIKPFVEHLEGIGLQRLAIARIIEKKPYVLGFGLEDKVKPNIEAL-LEFGVRKEALAFI 309

Query: 191 LLRNPKVLG 200
           + + P +LG
Sbjct: 310 VAQYPDILG 317

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BLAST of CSPI02G24950 vs. ExPASy TrEMBL
Match: A0A0A0LQN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 1.8e-122
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

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BLAST of CSPI02G24950 vs. ExPASy TrEMBL
Match: A0A1S3B2X0 (uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 3.1e-119
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

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BLAST of CSPI02G24950 vs. ExPASy TrEMBL
Match: A0A5A7T0X2 (Mitochondrial transcription termination factor family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G001190 PE=3 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPK 197
           GKSLRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

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BLAST of CSPI02G24950 vs. ExPASy TrEMBL
Match: A0A6J1JTP6 (uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 182/216 (84.26%), Postives = 196/216 (90.74%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSL SPIST+DS TR C ST C  TA S AVCS+VSFS   AK+ I  VRRQ+PYPR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSGAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEI S++QVESL+ SD+DKKTWEACRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTSQVESLVLSDDDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQ
Sbjct: 121 KKEVPNIDTVNEILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. ExPASy TrEMBL
Match: A0A6J1FK31 (uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC111444935 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.9e-101
Identity = 182/216 (84.26%), Postives = 196/216 (90.74%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSL SPIST+DS TR C ST C  TA S+AVCS+VSFS   AK+ I  VRRQ+PYPR
Sbjct: 1   MLGKSLVSPISTVDSVTRLCFSTPCIGTAKSEAVCSNVSFSYQPAKYMIMDVRRQSPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEI S+ QVESL+ SDEDKKTWEACRQALS+FSFS EEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEIHSTAQVESLVLSDEDKKTWEACRQALSMFSFSDEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VPNI+ VN+ILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLL+KEWGIQ
Sbjct: 121 KKEVPNIDTVNEILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLEKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLR+LLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRSLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: XP_011649898.1 (uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737008.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_031737009.1 uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >KAE8652244.1 hypothetical protein Csa_021907 [Cucumis sativus])

HSP 1 Score: 454.9 bits (1169), Expect = 3.9e-124
Identity = 218/219 (99.54%), Postives = 218/219 (99.54%), Query Frame = 0


Query: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60
           MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP
Sbjct: 1   MNGMLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNP 60

Query: 61  YPRKWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120
           YPRKWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG
Sbjct: 61  YPRKWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWG 120

Query: 121 EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW 180
           EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW
Sbjct: 121 EDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEW 180

Query: 181 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 219

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: XP_004138649.1 (uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011.1 uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus])

HSP 1 Score: 448.4 bits (1152), Expect = 3.7e-122
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEICSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEICSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: XP_008441218.1 (PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441220.1 PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo])

HSP 1 Score: 437.6 bits (1124), Expect = 6.5e-119
Identity = 210/216 (97.22%), Postives = 213/216 (98.61%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: XP_038885056.1 (uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 uncharacterized protein LOC120075592 [Benincasa hispida])

HSP 1 Score: 401.0 bits (1029), Expect = 6.7e-108
Identity = 195/216 (90.28%), Postives = 200/216 (92.59%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSL SPISTIDSATRFCCSTR  ATAISDA  S+VSFS H AKH IK VRRQ PYP 
Sbjct: 1   MLGKSLVSPISTIDSATRFCCSTRSIATAISDAARSNVSFSYHPAKHMIKDVRRQTPYPS 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWEICS+TQVESL  SDED+KTWEACRQALSVFSFSVEEQDKMLGKAF HIHSPYWGEDR
Sbjct: 61  KWEICSTTQVESLTLSDEDRKTWEACRQALSVFSFSVEEQDKMLGKAFSHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +K+VPNIE VNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKEVPNIETVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           GKSLRNLLLRNPKVLGY VDCKGDCIAKCTRCWVRF
Sbjct: 181 GKSLRNLLLRNPKVLGYNVDCKGDCIAKCTRCWVRF 216

[Close]

BLAST of CSPI02G24950 vs. NCBI nr
Match: KAA0037010.1 (Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa] >TYK06641.1 Mitochondrial transcription termination factor family protein isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 382.1 bits (980), Expect = 3.2e-102
Identity = 187/193 (96.89%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSHVSFSCHSAKHTIKGVRRQNPYPR 63
           MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCS+VSFS H AKHTIKGVRRQNPYPR
Sbjct: 1   MLGKSLASPISTIDSATRFCCSTRCTATAISDAVCSNVSFSYHPAKHTIKGVRRQNPYPR 60

Query: 64  KWEICSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 123
           KWE+CSSTQVESLI SDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR
Sbjct: 61  KWEVCSSTQVESLILSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYWGEDR 120

Query: 124 EKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 183
           +KKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ
Sbjct: 121 KKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQ 180

Query: 184 GKSLRNLLLRNPK 197
           GKSLRNLLLRNPK
Sbjct: 181 GKSLRNLLLRNPK 193

[Close]

BLAST of CSPI02G24950 vs. TAIR 10
Match: AT4G09620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 251.1 bits (640), Expect = 8.0e-67
Identity = 125/220 (56.82%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 4   MLGKSLASPISTIDSATRFCCSTRCTATAISDAV--CSHVSFSCHSAKHTIKGVRRQNPY 63
           M+G SLASP++T+ SA       +C   +  D V   + +    +S+ H + G  R + Y
Sbjct: 3   MVGNSLASPLATLGSA-------KCFRHSAVDLVTYTNVLPLRLNSSYHGVNGGVRTSSY 62

Query: 64  PR-KWEI-CSSTQVESLIFSDEDKKTWEACRQALSVFSFSVEEQDKMLGKAFGHIHSPYW 123
            R KW + CS+TQVE+   S+ED   WE C++ALS F FSVEE+DK+LGKAFGHIHSPYW
Sbjct: 63  SRSKWIVFCSTTQVET---SNEDPNIWEECKEALSCFDFSVEEKDKILGKAFGHIHSPYW 122

Query: 124 GEDREKKVPNIEIVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKE 183
            E+R K+ P +E +N ILE+LR+LGLS++DL K++KKFPEVLGC+LE+E+K N+ +L+ +
Sbjct: 123 TEERVKENPKVETLNQILEFLRSLGLSDEDLHKVMKKFPEVLGCSLEEEMKPNIGILENQ 182

Query: 184 WGIQGKSLRNLLLRNPKVLGYYVDCKGDCIAKCTRCWVRF 220
           WGI GK LRNLLLRNPKVLGY VDCKGDC+A+CTRCWVRF
Sbjct: 183 WGITGKQLRNLLLRNPKVLGYNVDCKGDCVAQCTRCWVRF 212

[Close]

BLAST of CSPI02G24950 vs. TAIR 10
Match: AT4G02990.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 48.5 bits (114), Expect = 7.9e-06
Identity = 21/68 (30.88%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 132 IVNDILEYLRTLGLSNDDLSKLLKKFPEVLGCNLEQELKTNVQLLDKEWGIQGKSLRNLL 191
           I+  ++EYL  LG+     ++L++K P +LG  L+  +K NVQ+L +++ ++  SL +++
Sbjct: 286 IIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQIL-QDFNVRETSLPSII 345

Query: 192 LRNPKVLG 200
            + P+++G
Sbjct: 346 AQYPEIIG 352

The following BLAST results are available for this feature:

BLAST of CSPI02G24950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT96	1.1e-04	30.88	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	9.4e-04	30.43	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]

BLAST of CSPI02G24950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN8	1.8e-122	99.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G402090 PE=3 SV=1	[more]
A0A1S3B2X0	3.1e-119	97.22	uncharacterized protein LOC103485418 OS=Cucumis melo OX=3656 GN=LOC103485418 PE=...	[more]
A0A5A7T0X2	1.6e-102	96.89	Mitochondrial transcription termination factor family protein isoform 2 OS=Cucum...	[more]
A0A6J1JTP6	3.9e-101	84.26	uncharacterized protein LOC111489650 OS=Cucurbita maxima OX=3661 GN=LOC111489650...	[more]
A0A6J1FK31	3.9e-101	84.26	uncharacterized protein LOC111444935 OS=Cucurbita moschata OX=3662 GN=LOC1114449...	[more]

BLAST of CSPI02G24950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649898.1	3.9e-124	99.54	uncharacterized protein LOC101218603 isoform X1 [Cucumis sativus] >XP_011649900....	[more]
XP_004138649.1	3.7e-122	99.54	uncharacterized protein LOC101218603 isoform X2 [Cucumis sativus] >XP_031737011....	[more]
XP_008441218.1	6.5e-119	97.22	PREDICTED: uncharacterized protein LOC103485418 [Cucumis melo] >XP_008441219.1 P...	[more]
XP_038885056.1	6.7e-108	90.28	uncharacterized protein LOC120075592 [Benincasa hispida] >XP_038885057.1 unchara...	[more]
KAA0037010.1	3.2e-102	96.89	Mitochondrial transcription termination factor family protein isoform 2 [Cucumis...	[more]

BLAST of CSPI02G24950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09620.1	8.0e-67	56.82	Mitochondrial transcription termination factor family protein	[more]
AT4G02990.1	7.9e-06	30.88	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 148..180 e-value: 0.0034 score: 26.6
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 134..197 e-value: 2.3E-9 score: 36.6
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 1..215
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 122..211 e-value: 3.0E-15 score: 58.1
None	No IPR available	PANTHER	PTHR13068:SF192	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 1..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G24950.3	CSPI02G24950.3	mRNA
CSPI02G24950.1	CSPI02G24950.1	mRNA
CSPI02G24950.2	CSPI02G24950.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0042646	plastid nucleoid
molecular_function	GO:0003690	double-stranded DNA binding