CSPI02G24750 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G24750
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTIR domain-containing protein
LocationChr2: 21232723 .. 21233366 (-)
RNA-Seq ExpressionCSPI02G24750
SyntenyCSPI02G24750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGAAAGCACAGAAAATCAAAAAACTCTCCAACAAGATGAATTCCAAAGATGGAGGGACGATCTCACAGAAATTGCTAATTCATCTGGTGTGGTTTCCACACAGACTGGTAATCTTCAAACTTCCTTTTCATATTTTGTTTTGTCACTCCCCATTATTACTTTGCAAACTAAATTATATTTATGTCGACGATTTCAAACTAACTGGAAGGCCCATTTTGTGAGTGATTTTAGGTCAAAATCATCATCATCACCGTTATTATTACTTTGAGAAGGTAGGTCAAATCATTTAATTATGTTTACTTCTTACAGTATATTGTATTTTGATGTTTGGTTTCAAGTTTTTGGAAGTGTTTGATTTAGTTAAAAATGTTTAAAATCATTAGTGCTGTTTTCTTTACAAGTAAATTTGATGGTTATCCCCTTCTTGAGAACGAAAGAGAAAATTCTGATAAAAATAAAGGACATAAACTACCAGATTTACGAAAGAAGCTTCTATATCTCAAGTTATGCAGGAAGAGAATCTTCAAAGATAGGCAATGTGGAAGGAAGGGGTTGCTTATTGTTCTTGATGACATTGATTACATAGAACAATTAGAGAATTTAGTAGGAGAACGCATTCAGTTCGGAGCTAAGGACTAG

mRNA sequence

ATGTCCGAAAGCACAGAAAATCAAAAAACTCTCCAACAAGATGAATTCCAAAGATGGAGGGACGATCTCACAGAAATTGCTAATTCATCTGGTGTGGTTTCCACACAGACTGGTCAAAATCATCATCATCACCGTTATTATTACTTTGAGAAGTTAAAAATGTTTAAAATCATTAGTGCTGTTTTCTTTACAAGTAAATTTGATGGTTATCCCCTTCTTGAGAACGAAAGAGAAAATTCTGATAAAAATAAAGGACATAAACTACCAGATTTACGAAAGAAGCTTCTATATCTCAAGTTATGCAGGAAGAGAATCTTCAAAGATAGGCAATGTGGAAGGAAGGGGTTGCTTATTGTTCTTGATGACATTGATTACATAGAACAATTAGAGAATTTAGTAGGAGAACGCATTCAGTTCGGAGCTAAGGACTAG

Coding sequence (CDS)

ATGTCCGAAAGCACAGAAAATCAAAAAACTCTCCAACAAGATGAATTCCAAAGATGGAGGGACGATCTCACAGAAATTGCTAATTCATCTGGTGTGGTTTCCACACAGACTGGTCAAAATCATCATCATCACCGTTATTATTACTTTGAGAAGTTAAAAATGTTTAAAATCATTAGTGCTGTTTTCTTTACAAGTAAATTTGATGGTTATCCCCTTCTTGAGAACGAAAGAGAAAATTCTGATAAAAATAAAGGACATAAACTACCAGATTTACGAAAGAAGCTTCTATATCTCAAGTTATGCAGGAAGAGAATCTTCAAAGATAGGCAATGTGGAAGGAAGGGGTTGCTTATTGTTCTTGATGACATTGATTACATAGAACAATTAGAGAATTTAGTAGGAGAACGCATTCAGTTCGGAGCTAAGGACTAG

Protein sequence

MSESTENQKTLQQDEFQRWRDDLTEIANSSGVVSTQTGQNHHHHRYYYFEKLKMFKIISAVFFTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRIFKDRQCGRKGLLIVLDDIDYIEQLENLVGERIQFGAKD*
Homology
BLAST of CSPI02G24750 vs. ExPASy TrEMBL
Match: A0A0A0LMF1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401400 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.5e-53
Identity = 113/140 (80.71%), Postives = 115/140 (82.14%), Query Frame = 0

Query: 1   MSESTENQKTLQQDEFQRWRDDLTEIANSSGVVSTQTGQNHHHHRYYYFEKLKMFKIISA 60
           MSESTENQ+TLQQDEFQRWRDDLTEIANSSGVVSTQTGQNHHHHRYYYFEK         
Sbjct: 1   MSESTENQRTLQQDEFQRWRDDLTEIANSSGVVSTQTGQNHHHHRYYYFEK--------- 60

Query: 61  VFFTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRIFKDRQCGRKGLLIVL 120
                         NERENS KNKGHKLPDL+KKLLYLKLCRKRIFKDRQCGRKGLLIVL
Sbjct: 61  --------------NERENSGKNKGHKLPDLQKKLLYLKLCRKRIFKDRQCGRKGLLIVL 117

Query: 121 DDIDYIEQLENLVGERIQFG 141
            DIDYIEQLENLVGERIQFG
Sbjct: 121 GDIDYIEQLENLVGERIQFG 117

BLAST of CSPI02G24750 vs. ExPASy TrEMBL
Match: A0A2J6LC65 (TIR domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X48241 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 0

Query: 57  IISAVF--FTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRK----------- 116
           + S++F   +SKFDG   L+N R  S KN G  L +L++K+L   L +K           
Sbjct: 263 LASSIFDEISSKFDGCCFLKNVRGESSKNNG--LENLQQKILSDVLKQKQVEVRRVEEGR 322

Query: 117 RIFKDRQCGRKGLLIVLDDIDYIEQLENLVGERIQFG 141
           R+ KDR   RK +LIVLDD+D +E LE+L G R  FG
Sbjct: 323 RMIKDRLQHRK-VLIVLDDVDNLEHLEDLAGSRDWFG 356

BLAST of CSPI02G24750 vs. ExPASy TrEMBL
Match: A0A7N2LA80 (TIR domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 63  FTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRI-FKDRQCGR-------- 122
           F ++F+G   L N RE   K   H L  L+K+LL   L  + I F D Q G         
Sbjct: 242 FRNRFEGSSFLANVREECGK---HGLVHLKKQLLSDILIERNIDFSDVQWGSNVIEKRLC 301

Query: 123 -KGLLIVLDDIDYIEQLENLVGERIQFG 141
            K +LIVLDD+D ++QLE L GERI FG
Sbjct: 302 YKSVLIVLDDVDQLDQLEELAGERIWFG 326

BLAST of CSPI02G24750 vs. NCBI nr
Match: XP_024989846.1 (TMV resistance protein N-like [Cynara cardunculus var. scolymus])

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 64  TSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKR-----------IFKDRQCG 123
           +S+FDG   ++N RE S K+ G  LP L++++L L L +K+           + K R C 
Sbjct: 142 SSRFDGCCFVDNIREESSKSDG--LPKLQERILSLVLKQKQMEVNRVVQGRCLIKSRLC- 201

Query: 124 RKGLLIVLDDIDYIEQLENLVGERIQFG 141
           RK +LIVLDD+D+++QL++L G    FG
Sbjct: 202 RKKVLIVLDDVDHLDQLKSLAGSHDWFG 226

BLAST of CSPI02G24750 vs. NCBI nr
Match: XP_030961367.1 (TMV resistance protein N-like isoform X1 [Quercus lobata])

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 63  FTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRI-FKDRQCGR-------- 122
           F ++F+G   L N RE   K   H L  L+K+LL   L  + I F D Q G         
Sbjct: 242 FRNRFEGSSFLANVREECGK---HGLVHLKKQLLSDILIERNIDFSDVQWGSNVIEKRLC 301

Query: 123 -KGLLIVLDDIDYIEQLENLVGERIQFG 141
            K +LIVLDD+D ++QLE L GERI FG
Sbjct: 302 YKSVLIVLDDVDQLDQLEELAGERIWFG 326

BLAST of CSPI02G24750 vs. NCBI nr
Match: XP_030961369.1 (TMV resistance protein N-like isoform X3 [Quercus lobata])

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 63  FTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRI-FKDRQCGR-------- 122
           F ++F+G   L N RE   K   H L  L+K+LL   L  + I F D Q G         
Sbjct: 242 FRNRFEGSSFLANVREECGK---HGLVHLKKQLLSDILIERNIDFSDVQWGSNVIEKRLC 301

Query: 123 -KGLLIVLDDIDYIEQLENLVGERIQFG 141
            K +LIVLDD+D ++QLE L GERI FG
Sbjct: 302 YKSVLIVLDDVDQLDQLEELAGERIWFG 326

BLAST of CSPI02G24750 vs. NCBI nr
Match: XP_023927832.1 (TMV resistance protein N-like [Quercus suber])

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 0

Query: 67  FDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRI-FKDRQCGR---------KGL 126
           FDG   L N RE   K   H L  L+K+LL+  L  + I F D Q G          K +
Sbjct: 246 FDGSSFLANVREECGK---HGLVHLQKQLLFDILIERNIDFSDVQWGSNVIEKRLCYKNV 305

Query: 127 LIVLDDIDYIEQLENLVGERIQFG 141
           LIVLDD+D ++QLE+L GER+ FG
Sbjct: 306 LIVLDDVDQLDQLESLAGERVWFG 326

BLAST of CSPI02G24750 vs. NCBI nr
Match: XP_030961368.1 (TMV resistance protein N-like isoform X2 [Quercus lobata])

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-04
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 63  FTSKFDGYPLLENERENSDKNKGHKLPDLRKKLLYLKLCRKRI-FKDRQCGR-------- 122
           F ++F+G   L N RE   K   H L  L+K+LL   L  + I F D Q G         
Sbjct: 226 FRNRFEGSSFLANVREECGK---HGLVHLKKQLLSDILIERNIDFSDVQWGSNVIEKRLC 285

Query: 123 -KGLLIVLDDIDYIEQLENLVGERIQFG 141
            K +LIVLDD+D ++QLE L GERI FG
Sbjct: 286 YKSVLIVLDDVDQLDQLEELAGERIWFG 310

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LMF11.5e-5380.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401400 PE=4 SV=1[more]
A0A2J6LC652.9e-0442.27TIR domain-containing protein OS=Lactuca sativa OX=4236 GN=LSAT_8X48241 PE=4 SV=... [more]
A0A7N2LA802.9e-0443.18TIR domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_024989846.12.0e-0439.77TMV resistance protein N-like [Cynara cardunculus var. scolymus][more]
XP_030961367.15.9e-0443.18TMV resistance protein N-like isoform X1 [Quercus lobata][more]
XP_030961369.15.9e-0443.18TMV resistance protein N-like isoform X3 [Quercus lobata][more]
XP_023927832.15.9e-0444.05TMV resistance protein N-like [Quercus suber][more]
XP_030961368.15.9e-0443.18TMV resistance protein N-like isoform X2 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G24750.1CSPI02G24750.1mRNA