CSPI02G23730 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G23730
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 20381730 .. 20382360 (-)
RNA-Seq Expression	CSPI02G23730
Synteny	CSPI02G23730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAAGAAGAAAAGTAGTGTTTATTCAGACTATAATTCTAATAAGATGAGAAGGTCAGAATGAAACTTGGTCCCCGAAAACGATTTGAATATTTATTTCATCAACACCCAAGTAAGAAAAACAAACAAAAAAAAAAAAGAAAAAGAAATTATGATGTATATATATGATATGATATTTACAATTCCAGGGGCAGAGGAGGAATTTACAACAAAAATCTCAAAATCGGTGGTATAATGAGTCAAGGAGAGGGGGAAATGGGGATTTGATGTTGAGATCCGGCGAATTTGGTAGCGGACGAGGGGAATCTAACCGTGAAATCTCTGAAGGGGAACTGATGGTCATCATGGGAATGGTCGTCGAAATTAAGGGCATAACTGGAAGAATCGTAGGAAAAGTGAGCAGAGGAAAGGGAGTTTGTCCGGCGACGAGCAAGCCGAGCAAGGAAATAGCGGCAGCGGCGAAGTAAGCGAGAGAGTTGAAGAGCGGTGGATTTGAGGCAGGAAGAGGGGGATGATTTAGGGGTGTTGGAGGGATGGAAGCAGCAGAATGAAGGAGAGAACATTGTTGGTGGAAGTGAGTGTGAGTGGTAGGAGTAGATGAAGAAGTAGAAGATAATAAT

mRNA sequence

AAAAAAAAAAAAAAAAAGAAGAAAAGTAGTGTTTATTCAGACTATAATTCTAATAAGATGAGAAGGTCAGAATGAAACTTGGTCCCCGAAAACGATTTGAATATTTATTTCATCAACACCCAAGTAAGAAAAACAAACAAAAAAAAAAAAGAAAAAGAAATTATGATGTATATATATGATATGATATTTACAATTCCAGGGGCAGAGGAGGAATTTACAACAAAAATCTCAAAATCGGTGGTATAATGAGTCAAGGAGAGGGGGAAATGGGGATTTGATGTTGAGATCCGGCGAATTTGGTAGCGGACGAGGGGAATCTAACCGTGAAATCTCTGAAGGGGAACTGATGGTCATCATGGGAATGGTCGTCGAAATTAAGGGCATAACTGGAAGAATCGTAGGAAAAGTGAGCAGAGGAAAGGGAGTTTGTCCGGCGACGAGCAAGCCGAGCAAGGAAATAGCGGCAGCGGCGAAGTAAGCGAGAGAGTTGAAGAGCGGTGGATTTGAGGCAGGAAGAGGGGGATGATTTAGGGGTGTTGGAGGGATGGAAGCAGCAGAATGAAGGAGAGAACATTGTTGGTGGAAGTGAGTGTGAGTGGTAGGAGTAGATGAAGAAGTAGAAGATAATAAT

Coding sequence (CDS)

ATGTTGAGATCCGGCGAATTTGGTAGCGGACGAGGGGAATCTAACCGTGAAATCTCTGAAGGGGAACTGATGGTCATCATGGGAATGGTCGTCGAAATTAAGGGCATAACTGGAAGAATCGTAGGAAAAGTGAGCAGAGGAAAGGGAGTTTGTCCGGCGACGAGCAAGCCGAGCAAGGAAATAGCGGCAGCGGCGAAGTAA

Protein sequence

MLRSGEFGSGRGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPATSKPSKEIAAAAK*

Homology

[Close]

BLAST of CSPI02G23730 vs. ExPASy TrEMBL
Match: A0A0A0LMF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382470 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-26
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MLRSGEFGSGRGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPATSKPSKE 60
          MLRSGEFGSGRGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPATSKPSKE
Sbjct: 1  MLRSGEFGSGRGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPATSKPSKE 60

Query: 61 IAAAAK 67
          IAAAAK
Sbjct: 61 IAAAAK 66

The following BLAST results are available for this feature:

BLAST of CSPI02G23730 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G23730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMF3	3.6e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G382470 PE=4 SV=1	[more]

BLAST of CSPI02G23730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI02G23730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G23730.1	CSPI02G23730.1	mRNA