CSPI02G22290 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G22290
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	exosome complex exonuclease RRP46 homolog
Location	Chr2: 19431799 .. 19434977 (+)
RNA-Seq Expression	CSPI02G22290
Synteny	CSPI02G22290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAAATTCCTCCGTCTCTCTTAGTTTCTCTCCTCCGCCGTCTTTCTATCTTTCTCTACTAATTCGTTTCTCCTCTCTTTCACCCGCTCTTTACAGAACTTCAGCGGCTTCCTCGCTCCATCGCAAGAAACTTAAAACCGACTGAGTTTGATTTCATCTTATCGTCTTCTTCTCCTTTATAATATTTCGAAACCACCGGAGAAAAGACCATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTCTCTCCATCTTCCACCGACTTCTCTTACTTCTTGCTTTATTAGTTTATGAGCTGGTTTAATTTTGGGAAGTTGTGTTATTTTTCACTGAGTAAGTTTGTTTATCTTGGACTGTGTAGGTGATACGAAGGTTCTTGCTGCTGTCTATGAACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGTAAGCTTCATGTCTTTCTCCATCTCTGATTCCTATGATAAAATTTCCATTTCCTGAGCTTACTAGTTAATGGCATTGGTAATCTGGTTTTCTTTGCACGCAGTTTACTATTTTGTGTTACAGTTGTATTGAAAACAGGTGATGATATTCTTTGAATGTTCTTGAACCATTTCCTATTTGTTTATCATTACACATTTTATGATGTGTTAGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTGAGTCTTAACTTTTTCCCGTTTTTGATCCAAATGCATTTGATTTCGTGATATGCTACATGTAGTCGTCTTCTTTTGTTCCTGTTCTAAAAACTCTATAGTGCTTGTTCCATGGTGATTTTTTAAAGCGTATTTAACATACATCCAATAGGCATCTCAAAATGTTGTGGATGGTAAGCAAGTTGTAACCCAAGGCAAACGATCCTCAACATTCAATTTTCAAATTTATGTTATAGTTATTCAGTTTTATAGTCGTGAAAAATATCATTCTTTAGAGAATTCTTTCTATTCCAATGTTCCTTATAGTCCCATCCAACCCAAGTTTTCTGATTTTTGCTATACTACTCCCGACATGGGCATATACATAGCGCCACGGCATGTTAATCATTTTGTTTTTCATGTGAAACTTCAAACAACTTAGGAAATAATTAGCCGCAGTATGCTATTCTGTTATTGAGTCTATGTTTATGGAAAGTGGAAATTTTCTTAAACCTTTAAGGAGACCTTTATTTTAAAATTGTCGCTGATGGAAATTGGTCCAACATTTATTCCTTCCCACATCATATTATCATAAAAAATGTTTTGGACTGAACTTTGAAATACATTACATTTAACGCCTTTTCATTACTTTTGCTGCAAACTAGTTTCTTATCTCAAATACATTGATGTTTCCCCCCATAATTGCAGGTTATTCATGATGATGGAGCTGTATCCCTTGTAATTTTATACCTTTTTTTGTAGATTACTAAAGATAATTTTAGGAGAAAACATATGTTACTTACGACACATATAAGTCATTTCATTATGATTCTATTCTGTCCAACTCCTCGCACATACATTAGGGTTGCTGAGCCTACCATACTATATAAGAAATTATTCATATTAATATAACCATGGGAATTTACTGTTGGCCCAAGGAAAAAGGATGAACTAGTGCTTACTTACCAATATACTACACACATTTTTCTTATAAATTTGGAGTGCTTTGCACCCTTCTTAAAATATCTTCAAGAACTTCTTTAACAGACTTCTCAAATAGCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGGTAATTAAGTTTTATGGTCTTATTATTTATGGTCTTATTATTTATGTCTTCACCTGATAAAGGAAAGATTGGCACTGACTGCTCTGCTCTGTAAATACAGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGGTCAGTACTTCACTTTTATTTAATTTATAATACCGTTTGTGGCAGTGCTTGTCCAATTTTGCTGTTTACATTTTTATAAGCATAGAAATGGTATACTGGTCTTAGCAGGGGTTAGGTAAGTAGTTCCAGATTATTAAATTTCTCAAAGAAACCGGGGAAGAGTGAAAATGGTTGAGTTTGATTACTAATCAAGTGAGTTTTGAAGAAAAATGAATTTGAAATTGCAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGGTATTTTGTCACAAAACATAGCTATTTTCCTCTGGTCGTAATTAAACTTACACGTCTGTTCTGAGTTTTAATAGATTTTTCATTTTAGAATTTCTGTGACTCAACAAGCTTAAACTGAATGTTCATTTCTATATCATATCATGTTAATAATCACATGCTATTATAGTAAGATTACGCATGTCACTATGGTTAAAGTGCTCTTATACTATATGCTCGAGTCACCAACACATTTTGGACAAATTTCTTTTCCTATTTTTTTTTATTCTAGATATATTTTCACTCTCTTGACACTGTAACACAGTCCTTAGATGGACATAATAGATTATTAATTCTCCATGGTTAGGCACACTTCTCTCATCATGCCATGTTTTTCTTTGTAACGTTGTGTTTTGTTTGAAAATGGATTGGGATCTTGTTATAGCATCAAAGGTCAAAACTAGTACAGTTATTCTCCTCTTAGTACAGTTATTATCCTCTGATTGCTTATGGAATCTGAAAAAGTGTGAATGTTAGATGGAAAAATAAGAGTTGGGATCTAAGTTTGTTGTCGTTTAATGTTTAAAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

mRNA sequence

CCAAAATTCCTCCGTCTCTCTTAGTTTCTCTCCTCCGCCGTCTTTCTATCTTTCTCTACTAATTCGTTTCTCCTCTCTTTCACCCGCTCTTTACAGAACTTCAGCGGCTTCCTCGCTCCATCGCAAGAAACTTAAAACCGACTGAGTTTGATTTCATCTTATCGTCTTCTTCTCCTTTATAATATTTCGAAACCACCGGAGAAAAGACCATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGATACGAAGGTTCTTGCTGCTGTCTATGAACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

Coding sequence (CDS)

ATGGAGATAGACAGAGATGATGGTCGTACCCCTAACCAGTTGAGACCACTTGCTTGTTCTTGCAACGTTCTTAATCGTGCTCATGGCTCCGCCAGTTGGTCCCAAGGTGATACGAAGGTTCTTGCTGCTGTCTATGAACCTAAAGCTGGAACGAAGAAGAATGAAAATCCTGAGAAGGCTTCAATTGAGGTTATATGGAAACCTAAGACAGGGCAAATTGGAAAACTGGAAAGGGAGTGTGAGATGATATTAAAGCGGACATTGCAGAGTATTTGCATATTAACTACTAATCCCAATACCACCACATCTATTATTGTTCAGGTTATTCATGATGATGGAGCTCTTCTTCCTTGTGCTATTAACGCATCATGTGCTGCCCTTGTAGATGCCGGAATTCCTTTAAAGCATCTTGCTGTTGCGATTTCGTGTTGTTTGTCTGAGAATGGATATGTTATTTTGGATCCAACCAAGATAGAGGAGGAGAAAATGAAGGCCTCTGTGCATTTGGTCTTCCCAAATGCACCTGTCTCAGTAGTTCCTGAAGGATCTACACAAGGTGTAGGTGAACCACTGGAGCATGGAATAATCACATCTGTAACTCAGGGTGCAATGTCAGTGGACGATTATATTCACTGCCTGGAACGGGGGCGTGCTGCTACTACAAAAATGTCTGCTTTTCTGAGGAGAAGTTTGCAGCCCCAACTCCCAATGGATTCCTCAAAAGCTGGCTGA

Protein sequence

MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKASIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSSKAG*

Homology

[Close]

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot
Match: Q9LX74 (Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP46 PE=2 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 5.7e-103
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot
Match: Q84T68 (Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=RRP46 PE=1 SV=2)

HSP 1 Score: 298.5 bits (763), Expect = 6.8e-80
Identity = 152/238 (63.87%), Postives = 184/238 (77.31%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           ME  R DGR PNQLRP +C+ N L+RAHGSA W+QGDT VLAAVY PK GT+K ENPEKA
Sbjct: 1   MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEV+WKP TGQIGK E+E EM LKRTLQSIC+LT +PNTTTS+I+QV+ +DG+LLPCAI
Sbjct: 61  SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA CAALV AGIPLKHLAVAI C + E+G VILD  K EE+++K+  HLVFPN+  S   
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMD 239
           +   Q   E  E G+ITS+T G MS +DY  C+ERG AA++++S F+R +LQ Q P D
Sbjct: 181 KEPNQ-KEEDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGD 237

[Close]

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot
Match: Q9NQT4 (Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.4e-32
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VY P       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ + T +P T+ ++++QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEH 193
           ++ L   ++C L  +G ++LDPT  +E++ +A +                     + +E 
Sbjct: 148 MRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFAL-----------------DSVER 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQ 229

[Close]

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot
Match: Q9CRA8 (Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.3e-32
Identity = 78/219 (35.62%), Postives = 123/219 (56.16%), Query Frame = 0


Query: 14  LRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKASIEVIWKPKTGQI 73
           LR  AC  N+L+R  GSAS+ QGDT VLA VY P       E   KA++EVI +PK G  
Sbjct: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87

Query: 74  GKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAINASCAALVDAGIP 133
           G  E+  E +++ T +++ +   +P T+ ++++QV+ D G+LL C +NA+C ALVDAG+P
Sbjct: 88  GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147

Query: 134 LKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVPEGSTQGVGEPLEH 193
           ++ L   ++C L  +G ++LDPT  +E++ +A +     +A                 E 
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEARAILTFALDSA-----------------EQ 207

Query: 194 GIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQ 233
            ++ S T+G  S  +   CL   +AA+  +  F R SLQ
Sbjct: 208 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQ 229

[Close]

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot
Match: Q9SP08 (Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 8.5e-14
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 0


Query: 5   RDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKASIEV 64
           R DGR  N++R +     V+++A GSA +  G+TKV+AAVY P+    K++  +     V
Sbjct: 10  RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69

Query: 65  IWKPKTGQIGKLER----------ECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGA 124
           + +    Q    +R          E  +++++T+++  +    P++   I +QV+  DG 
Sbjct: 70  LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADGG 129

Query: 125 LLPCAINASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASV 168
                INA+  AL DAGIP++ LAV+ S     N   +LD   +E+    A V
Sbjct: 130 TRSACINAATLALADAGIPMRDLAVSCSAGYL-NSTPLLDLNYVEDSAGGADV 181

[Close]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL
Match: A0A0A0LLJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.6e-132
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM+SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL
Match: A0A5A7VGL5 (Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G003630 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.3e-131
Identity = 239/243 (98.35%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVSVVP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQGVGEPLEHG+ITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL MDSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL
Match: A0A1S3BB90 (exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC103488187 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.3e-131
Identity = 239/243 (98.35%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVSVVP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQGVGEPLEHG+ITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL MDSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL
Match: A0A6J1GI69 (exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC111454378 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL
Match: A0A6J1KQK5 (exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC111496308 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.2e-125
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of CSPI02G22290 vs. NCBI nr
Match: XP_004150286.1 (exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothetical protein Csa_022164 [Cucumis sativus])

HSP 1 Score: 481.9 bits (1239), Expect = 3.3e-132
Identity = 241/243 (99.18%), Postives = 242/243 (99.59%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPM+SS
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of CSPI02G22290 vs. NCBI nr
Match: XP_008445020.1 (PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo] >KAA0065035.1 exosome complex exonuclease RRP46-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 478.0 bits (1229), Expect = 4.8e-131
Identity = 239/243 (98.35%), Postives = 240/243 (98.77%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPN PVSVVP
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNTPVSVVP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQGVGEPLEHG+ITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQL MDSS
Sbjct: 181 EGSTQGVGEPLEHGMITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLSMDSS 240

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 243

[Close]

BLAST of CSPI02G22290 vs. NCBI nr
Match: XP_022951618.1 (exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exosome complex exonuclease RRP46-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020307.1 Exosome complex exonuclease RRP46-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 457.6 bits (1176), Expect = 6.7e-125
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of CSPI02G22290 vs. NCBI nr
Match: XP_023002484.1 (exosome complex exonuclease RRP46 homolog [Cucurbita maxima])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 226/243 (93.00%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDRDDGRT NQLRPLACSCNVLNRAHGSASWSQGDTK+LAAVY PKAGTKKNENPEKA
Sbjct: 1   MEIDRDDGRTANQLRPLACSCNVLNRAHGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP DSS
Sbjct: 181 EGSTQVGGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of CSPI02G22290 vs. NCBI nr
Match: XP_023538111.1 (exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 454.1 bits (1167), Expect = 7.4e-124
Identity = 224/243 (92.18%), Postives = 235/243 (96.71%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           ME+DRDDGRT NQLRPLACSCNVLNRA+GSASWSQGDTK+LAAVY PKAGTKKNENPEKA
Sbjct: 1   MEMDRDDGRTANQLRPLACSCNVLNRAYGSASWSQGDTKILAAVYGPKAGTKKNENPEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
           SIEVIWKPKTGQIGKLERECEMILKRTLQSICILT NPNTTTSI+VQVIHDDGALLPCAI
Sbjct: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTINPNTTTSIVVQVIHDDGALLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NASCAALVDAGIPLKHLAVAISCCLSE+GYVILDPTK+EE+KMKASVHLVFPN+PVSV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSESGYVILDPTKLEEQKMKASVHLVFPNSPVSVIP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGSTQ  GEPLE+GIITS+TQGAMSVDDYIHCLERGRAAT KMSAFLRRSLQPQLP DSS
Sbjct: 181 EGSTQVAGEPLENGIITSLTQGAMSVDDYIHCLERGRAATAKMSAFLRRSLQPQLPTDSS 240

Query: 241 KAG 244
           K G
Sbjct: 241 KVG 243

[Close]

BLAST of CSPI02G22290 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 4.1e-104
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of CSPI02G22290 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 4.1e-104
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of CSPI02G22290 vs. TAIR 10
Match: AT3G46210.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 4.1e-104
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of CSPI02G22290 vs. TAIR 10
Match: AT3G46210.4 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 4.1e-104
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

[Close]

BLAST of CSPI02G22290 vs. TAIR 10
Match: AT3G46210.5 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 375.2 bits (962), Expect = 4.1e-104
Identity = 181/243 (74.49%), Postives = 210/243 (86.42%), Query Frame = 0


Query: 1   MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYEPKAGTKKNENPEKA 60
           MEIDR+DGRTPNQLRPLACS N+L+R HGSASWSQGDTKVLAAVY PKAGTKKNEN EKA
Sbjct: 1   MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60

Query: 61  SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
             EVIWKPK+GQIGK+E+E EMILKRT+QSIC+LT NPNTTTS+I+QV+HDDG+LLPCAI
Sbjct: 61  CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120

Query: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
           NA+CAALVDAGIP+KHLAVAI CCL+ENGY++LDP K+EE+KM A  +LVFPN  +SV+P
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180

Query: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
           EGS+   GEP+EHGIITS+T G MSVDDY  C+E GRAAT  +SAF R++ Q      SS
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ----QSSS 239

Query: 241 KAG 244
           KAG
Sbjct: 241 KAG 239

The following BLAST results are available for this feature:

BLAST of CSPI02G22290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX74	5.7e-103	74.49	Exosome complex exonuclease RRP46 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP...	[more]
Q84T68	6.8e-80	63.87	Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
Q9NQT4	1.4e-32	35.62	Exosome complex component RRP46 OS=Homo sapiens OX=9606 GN=EXOSC5 PE=1 SV=1	[more]
Q9CRA8	5.3e-32	35.62	Exosome complex component RRP46 OS=Mus musculus OX=10090 GN=Exosc5 PE=1 SV=1	[more]
Q9SP08	8.5e-14	30.06	Exosome complex component RRP41 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP41...	[more]

BLAST of CSPI02G22290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLJ9	1.6e-132	99.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G374620 PE=4 SV=1	[more]
A0A5A7VGL5	2.3e-131	98.35	Exosome complex exonuclease RRP46-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BB90	2.3e-131	98.35	exosome complex exonuclease RRP46 homolog OS=Cucumis melo OX=3656 GN=LOC10348818...	[more]
A0A6J1GI69	3.2e-125	93.00	exosome complex exonuclease RRP46 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1KQK5	7.2e-125	93.00	exosome complex exonuclease RRP46 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CSPI02G22290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150286.1	3.3e-132	99.18	exosome complex exonuclease RRP46 homolog [Cucumis sativus] >KGN62820.1 hypothet...	[more]
XP_008445020.1	4.8e-131	98.35	PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis melo] >KAA0065035....	[more]
XP_022951618.1	6.7e-125	93.00	exosome complex exonuclease RRP46 homolog [Cucurbita moschata] >KAG6585390.1 Exo...	[more]
XP_023002484.1	1.5e-124	93.00	exosome complex exonuclease RRP46 homolog [Cucurbita maxima]	[more]
XP_023538111.1	7.4e-124	92.18	exosome complex exonuclease RRP46 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI02G22290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46210.1	4.1e-104	74.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	4.1e-104	74.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.3	4.1e-104	74.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.4	4.1e-104	74.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.5	4.1e-104	74.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..241 e-value: 3.0E-69 score: 235.1
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 13..133 e-value: 4.8E-24 score: 85.3
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 136..215 e-value: 1.3E-4 score: 21.9
None	No IPR available	PANTHER	PTHR11953:SF1	EXOSOME COMPLEX COMPONENT RRP46	coord: 1..233
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 1..233
None	No IPR available	CDD	cd11372	RNase_PH_RRP46	coord: 14..228 e-value: 1.45431E-80 score: 238.233
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 133..232
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 5..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G22290.1	CSPI02G22290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:0071028	nuclear mRNA surveillance
biological_process	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0016075	rRNA catabolic process
biological_process	GO:0034475	U4 snRNA 3'-end processing
cellular_component	GO:0000177	cytoplasmic exosome (RNase complex)
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0004536	deoxyribonuclease activity
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0004540	ribonuclease activity
molecular_function	GO:0003727	single-stranded RNA binding